RchiOBHm_Chr5g0035151

ultrapetala

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0006109
Physical Location & Seq
Reverse (-)
29043189 .. 29044368
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31407

Sequence Viewer

Length: 681 bp
ATGTTTACCAATGGAGTTTTTGCTTATAGAAGATTTGAGCTTGGAACTTCATTCAACATTGTGTTTGGTCCAAAGAGATCATCAGCTGTAAGGAGAAACATTGCAGCTCAAAATAATGAGGTTCAGATCCAAAGACTAGCGCAAAACTTGTTTGGAGAAGAAGAGTTGACTCTGGTCCGGACTATAGACGGATTCAACCAAGGTGAAGATGCCATTGAAGTCTTGTGCGGTTGCACATGCACAGACAAAAAATATGAGATTACTGAGTCTACTGACCCAAGAAGAATGACACCAAAAGAATTTAAGAGCCATGCAAGGAGTGGAGTGAGAAGATGGAAGAGTAACATCTGGGTTAGGAAGGAAGGCAAAAAAGTCTCTCTTCAGAAATCAGGGTTGTGGAGATACTACAAGTACGCTGCGAATGATAGCAACTGGGACCGTCGCAGATCAGATTTCGTCCATCGAGATGAATTCCTTGGCTGCTCTAAGTGTCAAAAAGAGCGAAGAACAAATTGCGAAGATGAAGAAGAGCGTGTCGGTCGAAAATGCTACGGGAGATGTCCTCATGCCCCAACATGCAAGGGTTTCACCTCTTGTGTGTGTTCGGGTTGCAGCATGTGCCGCTTCAAGGACTGTGATTGCCAGACCTGTGTTGACTACATTCAGAATGTGGAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

26.23

Weight (kDa)

8.92

Isoelectric Point (pI)

56.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAND_ULT1 PF23292 88 - 136 2.2e-09 ULTRAPETALA1 SAND domain
zf_ULT1 PF23293 170 - 222 5.8e-15 ULTRAPETALA1 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 269
AccIII TCCGGA 1 cut(s) 177
AciI CCGC 2 cut(s) 228, 622
AclWI GGATC 1 cut(s) 121
AcsI RAATTY 2 cut(s) 299, 470
AcuI CTGAAG 1 cut(s) 365
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 1 cut(s) 628
AgsI TTSAA 4 cut(s) 55, 196, 218, 628
AluBI AGCT 3 cut(s) 40, 86, 107
AluI AGCT 3 cut(s) 40, 86, 107
Alw26I GTCTC 1 cut(s) 379
AlwI GGATC 1 cut(s) 121
Aor13HI TCCGGA 1 cut(s) 177
ApeKI GCWGC 4 cut(s) 104, 416, 480, 612
ApoI RAATTY 2 cut(s) 299, 470
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 3 cut(s) 68, 175, 436
AsuHPI GGTGA 2 cut(s) 215, 580
AvaII GGWCC 3 cut(s) 68, 175, 436
BbvI GCAGC 4 cut(s) 116, 403, 467, 624
BccI CCATC 2 cut(s) 327, 468
BcoDI GTCTC 1 cut(s) 379
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 5 cut(s) 105, 417, 481, 613, 622
BlsI GCNGC 5 cut(s) 106, 418, 482, 614, 623
Bme18I GGWCC 3 cut(s) 68, 175, 436
BmgT120I GGNCC 3 cut(s) 68, 175, 436
BmiI GGNNCC 2 cut(s) 437, 675
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 1 cut(s) 199
BmuI ACTGGG 1 cut(s) 442
BoxI GACNNNNGTC 1 cut(s) 173
BplI GAGNNNNNCTC 2 cut(s) 547, 579
BsaJI CCNNGG 2 cut(s) 199, 475
BsaWI WCCGGW 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 628
Bse1I ACTGG 1 cut(s) 437
Bse3DI GCAATG 1 cut(s) 99
BseAI TCCGGA 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 199, 475
BseLI CCNNNNNNNGG 1 cut(s) 628
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 437
BseXI GCAGC 4 cut(s) 116, 403, 467, 624
Bsh1285I CGRYCG 1 cut(s) 541
BsiEI CGRYCG 1 cut(s) 541
BsiSI CCGG 1 cut(s) 178
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 1 cut(s) 628
BsmAI GTCTC 1 cut(s) 379
BsmFI GGGAC 1 cut(s) 449
Bsp13I TCCGGA 1 cut(s) 177
Bsp143I GATC 3 cut(s) 77, 126, 446
BspACI CCGC 2 cut(s) 228, 622
BspCNI CTCAG 1 cut(s) 256
BspEI TCCGGA 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 437, 675
BspPI GGATC 1 cut(s) 121
BspQI GCTCTTC 1 cut(s) 522
BsrDI GCAATG 1 cut(s) 99
BsrI ACTGG 1 cut(s) 437
BssECI CCNNGG 2 cut(s) 199, 475
BssMI GATC 3 cut(s) 77, 126, 446
BssT1I CCWWGG 2 cut(s) 199, 475
Bst4CI ACNGT 2 cut(s) 440, 635
Bst6I CTCTTC 4 cut(s) 156, 332, 384, 522
BstAPI GCANNNNNTGC 1 cut(s) 618
BstDEI CTNAG 2 cut(s) 264, 486
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 3 cut(s) 80, 129, 449
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 3 cut(s) 77, 126, 446
BstMCI CGRYCG 1 cut(s) 541
BstMWI GCNNNNNNNGC 2 cut(s) 618, 621
BstNSI RCATGY 3 cut(s) 240, 579, 619
BstPAI GACNNNNGTC 1 cut(s) 173
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 4 cut(s) 116, 403, 467, 624
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
CfoI GCGC 1 cut(s) 142
Cfr13I GGNCC 3 cut(s) 68, 175, 436
Csp6I GTAC 1 cut(s) 412
CviAII CATG 5 cut(s) 237, 311, 566, 576, 616
CviJI RGCY 5 cut(s) 40, 86, 107, 309, 480
CviKI_1 RGCY 5 cut(s) 40, 86, 107, 309, 480
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 2 cut(s) 264, 486
DpnI GATC 3 cut(s) 79, 128, 448
DpnII GATC 3 cut(s) 77, 126, 446
Eam1104I CTCTTC 4 cut(s) 156, 332, 384, 522
EarI CTCTTC 4 cut(s) 156, 332, 384, 522
Eco130I CCWWGG 2 cut(s) 199, 475
Eco47I GGWCC 3 cut(s) 68, 175, 436
Eco57I CTGAAG 1 cut(s) 365
EcoRI GAATTC 1 cut(s) 470
EcoT14I CCWWGG 2 cut(s) 199, 475
ErhI CCWWGG 2 cut(s) 199, 475
FaeI CATG 5 cut(s) 240, 314, 569, 579, 619
FaiI YATR 8 cut(s) 27, 185, 238, 255, 312, 567, 577, 617
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FaqI GGGAC 1 cut(s) 449
FatI CATG 5 cut(s) 236, 310, 565, 575, 615
FblI GTMKAC 1 cut(s) 269
Fnu4HI GCNGC 5 cut(s) 105, 417, 481, 613, 622
Fsp4HI GCNGC 5 cut(s) 105, 417, 481, 613, 622
FspBI CTAG 1 cut(s) 137
GlaI GCGC 1 cut(s) 141
GluI GCNGC 5 cut(s) 105, 417, 481, 613, 622
HapII CCGG 1 cut(s) 178
HhaI GCGC 1 cut(s) 142
Hin1II CATG 5 cut(s) 240, 314, 569, 579, 619
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HincII GTYRAC 2 cut(s) 168, 655
HindII GTYRAC 2 cut(s) 168, 655
HinfI GANTC 3 cut(s) 169, 192, 266
HpaII CCGG 1 cut(s) 178
HphI GGTGA 2 cut(s) 215, 580
Hpy166II GTNNAC 4 cut(s) 6, 168, 270, 655
Hpy188I TCNGA 4 cut(s) 126, 384, 451, 666
Hpy188III TCNNGA 2 cut(s) 178, 464
Hpy8I GTNNAC 4 cut(s) 6, 168, 270, 655
Hpy99I CGWCG 1 cut(s) 444
HpyAV CCTTC 2 cut(s) 352, 356
HpyCH4III ACNGT 2 cut(s) 440, 635
HpyCH4V TGCA 6 cut(s) 104, 234, 240, 314, 579, 612
HpyF10VI GCNNNNNNNGC 2 cut(s) 618, 621
HpyF3I CTNAG 2 cut(s) 264, 486
Hsp92II CATG 5 cut(s) 240, 314, 569, 579, 619
HspAI GCGC 1 cut(s) 140
Kpn2I TCCGGA 1 cut(s) 177
Kzo9I GATC 3 cut(s) 77, 126, 446
LguI GCTCTTC 1 cut(s) 522
LpnPI CCDG 7 cut(s) 158, 191, 334, 375, 418, 656, 661
Lsp1109I GCAGC 4 cut(s) 116, 403, 467, 624
LweI GCATC 1 cut(s) 199
MaeI CTAG 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 341
MalI GATC 3 cut(s) 79, 128, 448
MboI GATC 3 cut(s) 77, 126, 446
MflI RGATCY 1 cut(s) 126
MluCI AATT 3 cut(s) 299, 470, 511
MlyI GAGTC 2 cut(s) 163, 275
MnlI CCTC 3 cut(s) 112, 573, 601
MroI TCCGGA 1 cut(s) 177
MseI TTAA 2 cut(s) 303, 679
MslI CAYNNNNRTG 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 1 cut(s) 178
MwoI GCNNNNNNNGC 2 cut(s) 618, 621
NdeII GATC 3 cut(s) 77, 126, 446
NlaIII CATG 5 cut(s) 240, 314, 569, 579, 619
NlaIV GGNNCC 2 cut(s) 437, 675
NspI RCATGY 3 cut(s) 240, 579, 619
PciSI GCTCTTC 1 cut(s) 522
PfeI GAWTC 1 cut(s) 192
PkrI GCNGC 5 cut(s) 106, 418, 482, 614, 623
PleI GAGTC 2 cut(s) 163, 274
PpsI GAGTC 2 cut(s) 163, 274
PshAI GACNNNNGTC 1 cut(s) 173
PspN4I GGNNCC 2 cut(s) 437, 675
PspPI GGNCC 3 cut(s) 68, 175, 436
PsuI RGATCY 1 cut(s) 126
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 1 cut(s) 465
SapI GCTCTTC 1 cut(s) 522
SaqAI TTAA 2 cut(s) 303, 679
SatI GCNGC 5 cut(s) 105, 417, 481, 613, 622
Sau3AI GATC 3 cut(s) 77, 126, 446
Sau96I GGNCC 3 cut(s) 68, 175, 436
SchI GAGTC 2 cut(s) 163, 275
SetI ASST 8 cut(s) 42, 88, 109, 123, 205, 593, 650, 679
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 3 cut(s) 68, 175, 436
SmiMI CAYNNNNRTG 1 cut(s) 465
Sse9I AATT 3 cut(s) 299, 470, 511
SsiI CCGC 2 cut(s) 228, 622
SspMI CTAG 1 cut(s) 137
StyI CCWWGG 2 cut(s) 199, 475
TaaI ACNGT 2 cut(s) 440, 635
TaqI TCGA 2 cut(s) 463, 541
TaqII GACCGA 1 cut(s) 527
TasI AATT 3 cut(s) 299, 470, 511
TauI GCSGC 1 cut(s) 624
TfiI GAWTC 1 cut(s) 192
Tru1I TTAA 2 cut(s) 303, 679
Tru9I TTAA 2 cut(s) 303, 679
TseI GCWGC 4 cut(s) 104, 416, 480, 612
TspDTI ATGAA 3 cut(s) 39, 483, 537
TspGWI ACGGA 1 cut(s) 204
VpaK11BI GGWCC 3 cut(s) 68, 175, 436
XapI RAATTY 2 cut(s) 299, 470
XceI RCATGY 3 cut(s) 240, 579, 619
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
XmiI GTMKAC 1 cut(s) 269
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.