Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006109

Physical Location & Seq

Genomic Coordinates Reverse (-)

29541383 .. 29542681

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033602

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGACTCTGATGAGTACATTTCAGCCTTTTCTCTCACCCATATTTCCTATTCACAGATTTGAGCTTGGAACTTCATTCAACATTGTGTTTGGTCCAAAGAGATCATCAGCTGTAAGGAGAAACATTGCAGCTCAAAATAATGAGGTTCAGATCCAAAGACCAGTGCAAACCTTGTTTGGAGAAGAAGAGTTGAATCTGGTCCGGACTATAGATGGATTCAACCAAGGTGAAGATGCCATTGAAGTCTTGTGCCGTTGCACCGACAAAAAATACGGTGACACGATTGGGAAGCTTATGGTTTCCTCGATTGGGCAGTTCATAATCACTTGTGAATGCCCTCTTGAGCATACCAAAGAGGACAGAGAGAATAAGATTACTGAGTCTACTGACCCAAGAACAATGACACCAAAAGAATTTGAGAGCCATGCAAGGAGTGGAGTGAGAAGATGGAAGAGTAACATCTGGGTTAGGAAGGAAGGCAAAAAAGTCTCTCTTCAGAAATCAGGGTTGTTGAGATACTACAAGTACGCTGCGAATGATAGCAACTGGGACCGTCGCAGATCAGATTTCGTCCATCGAGATGAATTCCTTGGCTGCTCTGAGTGTCAGAAAGAGCGAAGGTTTCATTTGCGCACAGTGGACGAGTGCAAAGCTTTCCATGAAGCCTCGAAAAGGATAAATTGGAGATGCGCTGACCGCTATGAAAAAACAAATTGCGAAGATGAAGAAGAGCGTGTCGGTCGAAAAAGCTACAGGAGATGTCCTCGTGCCCCAACATGCAAGGGTTGCACCTCTTGCGTGTGTTTGGGTTGCAGCATGTGCCGCTTCAAGGACTGTGATTGCCAGACCTGTGTTGACTACATTAAGAATGTGGAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

34.14

Weight (kDa)

8.73

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAND_ULT1	PF23292	70 - 174	1.6e-26	ULTRAPETALA1 SAND domain
zf_ULT1	PF23293	192 - 289	1.2e-36	ULTRAPETALA1 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20825 AT4G28190 AT4G28190
fragaria_vesca	FvH4_6g44900
malus_domestica	MD03G1220200.v1.1 MD09G1092100.v1.1 MD17G1082000.v1.1
prunus_persica	Prupe.3G232900_v2.0.a1 Prupe.4G188700_v2.0.a1
pyrus_communis	pycom03g16950 pycom17g08020
rosa_chinensis	RchiOBHm_Chr2g0162081 RchiOBHm_Chr5g0035151
rosa_laevigata	RLG00000021321 RLG00000033602
rosa_multiflora	Rmu_sc0004020.1_g000038 Rmu_sc0006558.1_g000019
rosa_roxburghii	Rroxscaffold_2G00088320
rosa_rugosa	Rorug02G0494500
rosa_samantha	Rh2AG560700 Rh2BG574000 Rh2CG544300 Rh2DG584000 Rh5DG267000
rosa_wichuraiana	Rw2G046440 Rw5G023690 Rw5G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	632
AccI	GTMKAC	1 cut(s)	383
AccIII	TCCGGA	1 cut(s)	201
AciI	CCGC	2 cut(s)	697, 823
AclWI	GGATC	1 cut(s)	145
AcsI	RAATTY	2 cut(s)	413, 584
AcuI	CTGAAG	1 cut(s)	479
AfaI	GTAC	2 cut(s)	16, 527
AfiI	CCNNNNNNNGG	3 cut(s)	309, 672, 829
AgsI	TTSAA	5 cut(s)	79, 193, 220, 242, 829
AluBI	AGCT	6 cut(s)	64, 110, 131, 292, 653, 750
AluI	AGCT	6 cut(s)	64, 110, 131, 292, 653, 750
Alw26I	GTCTC	1 cut(s)	493
AlwI	GGATC	1 cut(s)	145
Aor13HI	TCCGGA	1 cut(s)	201
ApeKI	GCWGC	4 cut(s)	128, 530, 594, 813
ApoI	RAATTY	2 cut(s)	413, 584
AspLEI	GCGC	2 cut(s)	633, 692
AspS9I	GGNCC	3 cut(s)	92, 199, 550
AsuHPI	GGTGA	3 cut(s)	27, 239, 287
AvaII	GGWCC	3 cut(s)	92, 199, 550
BaeGI	GKGCMC	1 cut(s)	772
BauI	CACGAG	1 cut(s)	765
BbvI	GCAGC	4 cut(s)	140, 517, 581, 825
BccI	CCATC	3 cut(s)	206, 441, 582
BceAI	ACGGC	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	493
BfmI	CTRYAG	2 cut(s)	207, 751
BisI	GCNGC	5 cut(s)	129, 531, 595, 814, 823
BlsI	GCNGC	5 cut(s)	130, 532, 596, 815, 824
Bme18I	GGWCC	3 cut(s)	92, 199, 550
BmgT120I	GGNCC	3 cut(s)	92, 199, 550
BmiI	GGNNCC	2 cut(s)	551, 876
BmrI	ACTGGG	1 cut(s)	556
BmsI	GCATC	2 cut(s)	223, 677
BmuI	ACTGGG	1 cut(s)	556
BplI	GAGNNNNNCTC	2 cut(s)	748, 780
BpuEI	CTTGAG	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	223, 589
BsaWI	WCCGGW	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	3 cut(s)	309, 672, 829
Bse1I	ACTGG	2 cut(s)	161, 551
Bse3DI	GCAATG	1 cut(s)	123
BseAI	TCCGGA	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	223, 589
BseLI	CCNNNNNNNGG	3 cut(s)	309, 672, 829
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	369, 591
BseNI	ACTGG	2 cut(s)	161, 551
BseSI	GKGCMC	1 cut(s)	772
BseXI	GCAGC	4 cut(s)	140, 517, 581, 825
Bsh1285I	CGRYCG	1 cut(s)	742
BsiEI	CGRYCG	1 cut(s)	742
BsiSI	CCGG	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	3 cut(s)	309, 672, 829
BsmAI	GTCTC	1 cut(s)	493
BsmFI	GGGAC	1 cut(s)	563
BsmI	GAATGC	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	772
Bsp13I	TCCGGA	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	101, 150, 560
BspACI	CCGC	2 cut(s)	697, 823
BspCNI	CTCAG	2 cut(s)	370, 592
BspEI	TCCGGA	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	551, 876
BspPI	GGATC	1 cut(s)	145
BspQI	GCTCTTC	1 cut(s)	723
BsrDI	GCAATG	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	161, 551
BssECI	CCNNGG	2 cut(s)	223, 589
BssMI	GATC	3 cut(s)	101, 150, 560
BssSI	CACGAG	1 cut(s)	765
BssT1I	CCWWGG	2 cut(s)	223, 589
Bst2BI	CACGAG	1 cut(s)	765
Bst4CI	ACNGT	4 cut(s)	275, 554, 637, 836
Bst6I	CTCTTC	4 cut(s)	180, 446, 498, 723
BstAPI	GCANNNNNTGC	3 cut(s)	786, 795, 819
BstDEI	CTNAG	2 cut(s)	378, 600
BstENI	CCTNNNNNAGG	1 cut(s)	670
BstHHI	GCGC	2 cut(s)	633, 692
BstKTI	GATC	3 cut(s)	104, 153, 563
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	3 cut(s)	101, 150, 560
BstMCI	CGRYCG	1 cut(s)	742
BstMWI	GCNNNNNNNGC	5 cut(s)	696, 786, 795, 819, 822
BstNSI	RCATGY	2 cut(s)	780, 820
BstSFI	CTRYAG	2 cut(s)	207, 751
BstSLI	GKGCMC	1 cut(s)	772
BstV1I	GCAGC	4 cut(s)	140, 517, 581, 825
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	168, 642
CfoI	GCGC	2 cut(s)	633, 692
Cfr13I	GGNCC	3 cut(s)	92, 199, 550
Csp6I	GTAC	2 cut(s)	15, 526
CviAII	CATG	4 cut(s)	425, 659, 777, 817
CviQI	GTAC	2 cut(s)	15, 526
DdeI	CTNAG	2 cut(s)	378, 600
DpnI	GATC	3 cut(s)	103, 152, 562
DpnII	GATC	3 cut(s)	101, 150, 560
Eam1104I	CTCTTC	4 cut(s)	180, 446, 498, 723
EarI	CTCTTC	4 cut(s)	180, 446, 498, 723
Eco130I	CCWWGG	2 cut(s)	223, 589
Eco47I	GGWCC	3 cut(s)	92, 199, 550
Eco57I	CTGAAG	1 cut(s)	479
EcoNI	CCTNNNNNAGG	1 cut(s)	670
EcoRI	GAATTC	1 cut(s)	584
EcoT14I	CCWWGG	2 cut(s)	223, 589
ErhI	CCWWGG	2 cut(s)	223, 589
FaeI	CATG	4 cut(s)	428, 662, 780, 820
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	4 cut(s)	424, 658, 776, 816
FblI	GTMKAC	1 cut(s)	383
Fnu4HI	GCNGC	5 cut(s)	129, 531, 595, 814, 823
Fsp4HI	GCNGC	5 cut(s)	129, 531, 595, 814, 823
FspI	TGCGCA	1 cut(s)	632
GlaI	GCGC	2 cut(s)	632, 691
GluI	GCNGC	5 cut(s)	129, 531, 595, 814, 823
HapII	CCGG	1 cut(s)	202
HhaI	GCGC	2 cut(s)	633, 692
Hin1II	CATG	4 cut(s)	428, 662, 780, 820
Hin6I	GCGC	2 cut(s)	631, 690
HinP1I	GCGC	2 cut(s)	631, 690
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HindIII	AAGCTT	2 cut(s)	290, 651
HinfI	GANTC	4 cut(s)	4, 193, 216, 380
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	3 cut(s)	27, 239, 287
Hpy166II	GTNNAC	3 cut(s)	384, 640, 856
Hpy188I	TCNGA	6 cut(s)	9, 150, 498, 565, 601, 609
Hpy188III	TCNNGA	3 cut(s)	202, 341, 578
Hpy8I	GTNNAC	3 cut(s)	384, 640, 856
Hpy99I	CGWCG	1 cut(s)	558
HpyAV	CCTTC	3 cut(s)	466, 470, 612
HpyCH4III	ACNGT	4 cut(s)	275, 554, 637, 836
HpyCH4V	TGCA	8 cut(s)	128, 166, 258, 428, 648, 780, 789, 813
HpyF10VI	GCNNNNNNNGC	5 cut(s)	696, 786, 795, 819, 822
HpyF3I	CTNAG	2 cut(s)	378, 600
Hsp92II	CATG	4 cut(s)	428, 662, 780, 820
HspAI	GCGC	2 cut(s)	631, 690
Kpn2I	TCCGGA	1 cut(s)	201
Kzo9I	GATC	3 cut(s)	101, 150, 560
LguI	GCTCTTC	1 cut(s)	723
LpnPI	CCDG	9 cut(s)	174, 182, 215, 448, 489, 532, 739, 857, 862
Lsp1109I	GCAGC	4 cut(s)	140, 517, 581, 825
LweI	GCATC	2 cut(s)	223, 677
MaeIII	GTNAC	2 cut(s)	275, 455
MalI	GATC	3 cut(s)	103, 152, 562
MboI	GATC	3 cut(s)	101, 150, 560
MboII	GAAGA	9 cut(s)	194, 197, 242, 456, 463, 485, 731, 737, 740
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	772
MluCI	AATT	4 cut(s)	413, 584, 679, 712
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	7 cut(s)	136, 313, 348, 349, 676, 774, 802
MroI	TCCGGA	1 cut(s)	201
MseI	TTAA	2 cut(s)	864, 880
MslI	CAYNNNNRTG	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	1 cut(s)	202
Mva1269I	GAATGC	1 cut(s)	338
MwoI	GCNNNNNNNGC	5 cut(s)	696, 786, 795, 819, 822
NdeII	GATC	3 cut(s)	101, 150, 560
NlaIII	CATG	4 cut(s)	428, 662, 780, 820
NlaIV	GGNNCC	2 cut(s)	551, 876
NmuCI	GTSAC	1 cut(s)	275
NsbI	TGCGCA	1 cut(s)	632
NspI	RCATGY	2 cut(s)	780, 820
PciSI	GCTCTTC	1 cut(s)	723
PctI	GAATGC	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	193, 216
PkrI	GCNGC	5 cut(s)	130, 532, 596, 815, 824
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	551, 876
PspPI	GGNCC	3 cut(s)	92, 199, 550
PsuI	RGATCY	1 cut(s)	150
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	16, 527
RsaNI	GTAC	2 cut(s)	15, 526
RseI	CAYNNNNRTG	1 cut(s)	579
SapI	GCTCTTC	1 cut(s)	723
SaqAI	TTAA	2 cut(s)	864, 880
SatI	GCNGC	5 cut(s)	129, 531, 595, 814, 823
Sau3AI	GATC	3 cut(s)	101, 150, 560
Sau96I	GGNCC	3 cut(s)	92, 199, 550
SchI	GAGTC	1 cut(s)	389
SduI	GDGCHC	1 cut(s)	772
SfaNI	GCATC	2 cut(s)	223, 677
SfcI	CTRYAG	2 cut(s)	207, 751
SinI	GGWCC	3 cut(s)	92, 199, 550
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	4 cut(s)	413, 584, 679, 712
SsiI	CCGC	2 cut(s)	697, 823
StyI	CCWWGG	2 cut(s)	223, 589
TaaI	ACNGT	4 cut(s)	275, 554, 637, 836
TaqI	TCGA	4 cut(s)	305, 577, 668, 742
TaqII	GACCGA	1 cut(s)	728
TasI	AATT	4 cut(s)	413, 584, 679, 712
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	825
TfiI	GAWTC	2 cut(s)	193, 216
Tru1I	TTAA	2 cut(s)	864, 880
Tru9I	TTAA	2 cut(s)	864, 880
TscAI	CASTG	2 cut(s)	168, 642
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	4 cut(s)	128, 530, 594, 813
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	7 cut(s)	63, 307, 597, 614, 675, 717, 738
TspRI	CASTG	2 cut(s)	168, 642
VpaK11BI	GGWCC	3 cut(s)	92, 199, 550
XagI	CCTNNNNNAGG	1 cut(s)	670
XapI	RAATTY	2 cut(s)	413, 584
XceI	RCATGY	2 cut(s)	780, 820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.