Rw5G023980

ultrapetala

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0006109
Physical Location & Seq
Forward (+)
34042722 .. 34043483
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G023980.1

Sequence Viewer

Length: 336 bp
ATGACCCCAAAAGAATTTGAGAGCCATGCAAGGAGTGGAGTGAGGCGATGGAAGAGCAACATCTGGGTTAACATGGAAGACAAAAAAGTCTCTCTTCAAAAATTGGGCCTGTTGAGATATTACAAGCATGCTGCGAATGAAACCAACTGGGACCATCGCATATCAGATTTCGGCCATTGGGATGAATTCCTTCGCTGCAGTGAGTGTCAAAAAGAGCGACGGTTTCATCTGCGCACAATGGATGAGTGCAGAGCTTTCCACAACGCCTCGACAAACATAAATTGGAGATGTGCTGACCACTATGACAAAAGAGTGTGTCGGTCGAAAAAGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

13.57

Weight (kDa)

9.51

Isoelectric Point (pI)

62.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAND_ULT1 PF23292 1 - 41 8e-10 ULTRAPETALA1 SAND domain
zf_ULT1 PF23293 59 - 108 7.1e-13 ULTRAPETALA1 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
Acc16I TGCGCA 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 2 cut(s) 14, 185
AgsI TTSAA 1 cut(s) 98
AluBI AGCT 2 cut(s) 254, 331
AluI AGCT 2 cut(s) 254, 331
Alw26I GTCTC 1 cut(s) 94
AoxI GGCC 2 cut(s) 106, 172
ApeKI GCWGC 2 cut(s) 131, 195
ApoI RAATTY 2 cut(s) 14, 185
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 234
AspS9I GGNCC 2 cut(s) 106, 151
AvaII GGWCC 1 cut(s) 151
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 118, 182
BccI CCATC 2 cut(s) 42, 162
BcoDI GTCTC 1 cut(s) 94
BfmI CTRYAG 1 cut(s) 196
BisI GCNGC 2 cut(s) 132, 196
BlsI GCNGC 2 cut(s) 133, 197
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 106, 151
BmiI GGNNCC 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 152
BseGI GGATG 2 cut(s) 187, 247
BseNI ACTGG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 118, 182
BsgI GTGCAG 1 cut(s) 268
Bsh1285I CGRYCG 1 cut(s) 323
BshFI GGCC 2 cut(s) 108, 174
BsiEI CGRYCG 1 cut(s) 323
BslFI GGGAC 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 2 cut(s) 108, 174
BspANI GGCC 2 cut(s) 108, 174
BspLI GGNNCC 1 cut(s) 152
BspMAI CTGCAG 1 cut(s) 200
BspQI GCTCTTC 1 cut(s) 47
BsrI ACTGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 2 cut(s) 47, 99
BstC8I GCNNGC 1 cut(s) 129
BstF5I GGATG 2 cut(s) 187, 247
BstHHI GCGC 1 cut(s) 234
BstMAI GTCTC 1 cut(s) 94
BstMCI CGRYCG 1 cut(s) 323
BstNSI RCATGY 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 118, 182
BstV2I GAAGAC 1 cut(s) 84
BsuRI GGCC 2 cut(s) 108, 174
BtgZI GCGATG 2 cut(s) 61, 140
BtsCI GGATG 2 cut(s) 187, 247
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 129
CfoI GCGC 1 cut(s) 234
Cfr13I GGNCC 2 cut(s) 106, 151
CviAII CATG 3 cut(s) 26, 73, 128
CviJI RGCY 5 cut(s) 24, 108, 174, 254, 331
CviKI_1 RGCY 5 cut(s) 24, 108, 174, 254, 331
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 2 cut(s) 47, 99
EarI CTCTTC 2 cut(s) 47, 99
Eco47I GGWCC 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 185
FaeI CATG 3 cut(s) 29, 76, 131
FaiI YATR 7 cut(s) 27, 74, 129, 161, 278, 303, 334
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 25, 72, 127
Fnu4HI GCNGC 2 cut(s) 132, 196
FokI GGATG 2 cut(s) 194, 254
Fsp4HI GCNGC 2 cut(s) 132, 196
FspI TGCGCA 1 cut(s) 233
GlaI GCGC 1 cut(s) 233
GluI GCNGC 2 cut(s) 132, 196
HaeIII GGCC 2 cut(s) 108, 174
HhaI GCGC 1 cut(s) 234
Hin1II CATG 3 cut(s) 29, 76, 131
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HpaI GTTAAC 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 166
Hpy8I GTNNAC 1 cut(s) 70
Hpy99I CGWCG 1 cut(s) 222
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4V TGCA 3 cut(s) 29, 198, 249
Hsp92II CATG 3 cut(s) 29, 76, 131
HspAI GCGC 1 cut(s) 232
KspAI GTTAAC 1 cut(s) 70
LguI GCTCTTC 1 cut(s) 47
LpnPI CCDG 3 cut(s) 49, 122, 133
Lsp1109I GCAGC 2 cut(s) 118, 182
MboII GAAGA 3 cut(s) 64, 86, 89
MluCI AATT 4 cut(s) 14, 101, 185, 280
MnlI CCTC 2 cut(s) 36, 277
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 180
NlaIII CATG 3 cut(s) 29, 76, 131
NlaIV GGNNCC 1 cut(s) 152
NsbI TGCGCA 1 cut(s) 233
NspI RCATGY 1 cut(s) 131
PaeI GCATGC 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 189
PkrI GCNGC 2 cut(s) 133, 197
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 2 cut(s) 106, 151
PstI CTGCAG 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 180
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 2 cut(s) 132, 196
Sau96I GGNCC 2 cut(s) 106, 151
SetI ASST 2 cut(s) 256, 333
SfcI CTRYAG 1 cut(s) 196
SgeI CNNG 9 cut(s) 38, 42, 76, 85, 121, 136, 140, 160, 280
SinI GGWCC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 180
SphI GCATGC 1 cut(s) 131
Sse9I AATT 4 cut(s) 14, 101, 185, 280
TaaI ACNGT 1 cut(s) 222
TaqI TCGA 2 cut(s) 269, 323
TaqII GACCGA 1 cut(s) 309
TasI AATT 4 cut(s) 14, 101, 185, 280
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 1 cut(s) 205
TseI GCWGC 2 cut(s) 131, 195
TspDTI ATGAA 3 cut(s) 153, 198, 215
TspRI CASTG 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 2 cut(s) 14, 185
XceI RCATGY 1 cut(s) 131
XcmI CCANNNNNNNNNTGG 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.