Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006109

Physical Location & Seq

Genomic Coordinates Reverse (-)

11227089 .. 11228967

Gene Structure 1879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G188700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTTCAGAGATGAAGATATTAAGCAACTGGAGAACATACATGAGCTCGTGCGAGGGCCAAATTACGTTGAAGTGATTTGTGGTTGCACAAGCAAGAAATATGGGGATCAAGTCGGCAAGCTTAAGATTTCTTCTACCGGCCAATTCCAAATAAATTGTGAATGCTCTGCACCTTCAACTTGCGAGGAAGTGGGGGTGTTAGAAGAAATTGGCAAATTGACACCAGAGGAATTCGAGAAGCATTCAAGGGAGAAAGAGGGGGGACCTAGAAAGTGGAAGAGCAATATTTGGGTAACAATCAAGGGCAAGAAAGTCCCACTTTGGAAATCAGGGCTGATGAGATACTACAAGCATGCCTCCAATGAAGGCAAATTGGGTTCAAGCAGTCGGCGTAGAGGGACTTTTCACAGGGATGAATTTCTACTTTGCTCCAAGTGTAAGAAAGAACGCAGGTTTCGCCTGCGAACGAAACAAGAGTGCAAAGCCTTCCATTATGCCTCCATGATTAAGAAGTGGAAATGCTCTGATCATCCATACGACAAAATAAAATGTGGTGATGAAGAAGAAAGAGCAAGTCGAAAAAGCTGTAGGGGTTGTCCTCGTACATCAACATGCAAGGGTTGCACATGTTGTGTGTGTCTTGGGTGTCTCAGATGCCGCTACTTGGACTGCAACTGCCGCATCTGTGTTGATTTCATGCAAAATGCCCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

27.48

Weight (kDa)

9.14

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20825 AT4G28190 AT4G28190
fragaria_vesca	FvH4_6g44900
malus_domestica	MD03G1220200.v1.1 MD09G1092100.v1.1 MD17G1082000.v1.1
prunus_persica	Prupe.3G232900_v2.0.a1 Prupe.4G188700_v2.0.a1
pyrus_communis	pycom03g16950 pycom17g08020
rosa_chinensis	RchiOBHm_Chr2g0162081 RchiOBHm_Chr5g0035151
rosa_laevigata	RLG00000021321 RLG00000033602
rosa_multiflora	Rmu_sc0004020.1_g000038 Rmu_sc0006558.1_g000019
rosa_roxburghii	Rroxscaffold_2G00088320
rosa_rugosa	Rorug02G0494500
rosa_samantha	Rh2AG560700 Rh2BG574000 Rh2CG544300 Rh2DG584000 Rh5DG267000
rosa_wichuraiana	Rw2G046440 Rw5G023690 Rw5G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	441
AciI	CCGC	2 cut(s)	658, 679
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	2 cut(s)	230, 416
AfaI	GTAC	1 cut(s)	604
AfiI	CCNNNNNNNGG	1 cut(s)	664
AflII	CTTAAG	1 cut(s)	122
AflIII	ACRYGT	1 cut(s)	626
AgsI	TTSAA	4 cut(s)	71, 177, 246, 381
AluBI	AGCT	3 cut(s)	46, 121, 585
AluI	AGCT	3 cut(s)	46, 121, 585
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	2 cut(s)	56, 139
ApoI	RAATTY	2 cut(s)	230, 416
AspS9I	GGNCC	2 cut(s)	56, 263
AsuHPI	GGTGA	1 cut(s)	566
AvaII	GGWCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	48
BauI	CACGAG	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	48
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	653
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	586
BfrI	CTTAAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	441
BisI	GCNGC	2 cut(s)	658, 679
BlsI	GCNGC	2 cut(s)	659, 680
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	56, 263
BmiI	GGNNCC	1 cut(s)	264
BmsI	GCATC	2 cut(s)	644, 690
BpmI	CTGGAG	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	664
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	33
BseGI	GGATG	2 cut(s)	418, 529
BseLI	CCNNNNNNNGG	1 cut(s)	664
BseMII	CTCAG	1 cut(s)	664
BseNI	ACTGG	1 cut(s)	33
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	58, 141
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	3 cut(s)	276, 299, 412
BslI	CCNNNNNNNGG	1 cut(s)	664
BsmAI	GTCTC	1 cut(s)	653
BsmFI	GGGAC	3 cut(s)	276, 299, 412
BsmI	GAATGC	2 cut(s)	167, 241
BsnI	GGCC	2 cut(s)	58, 141
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	106, 526
BspACI	CCGC	2 cut(s)	658, 679
BspANI	GGCC	2 cut(s)	58, 141
BspCNI	CTCAG	1 cut(s)	663
BspLI	GGNNCC	1 cut(s)	264
BspMI	ACCTGC	1 cut(s)	441
BspPI	GGATC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	272
BspTI	CTTAAG	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	33
BssAI	RCCGGY	1 cut(s)	137
BssMI	GATC	2 cut(s)	106, 526
BssSI	CACGAG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	272
BstAFI	CTTAAG	1 cut(s)	122
BstAPI	GCANNNNNTGC	1 cut(s)	621
BstC8I	GCNNGC	3 cut(s)	119, 354, 461
BstDEI	CTNAG	1 cut(s)	650
BstF5I	GGATG	2 cut(s)	418, 529
BstKTI	GATC	2 cut(s)	109, 529
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	2 cut(s)	106, 526
BstMWI	GCNNNNNNNGC	3 cut(s)	456, 621, 678
BstNSI	RCATGY	3 cut(s)	356, 615, 630
BstSFI	CTRYAG	1 cut(s)	586
BsuRI	GGCC	2 cut(s)	58, 141
BtsCI	GGATG	2 cut(s)	418, 529
BveI	ACCTGC	1 cut(s)	441
Cac8I	GCNNGC	3 cut(s)	119, 354, 461
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	56, 263
Csp6I	GTAC	1 cut(s)	603
CviAII	CATG	7 cut(s)	41, 353, 502, 612, 627, 697, 714
CviJI	RGCY	7 cut(s)	46, 58, 121, 141, 334, 485, 585
CviKI_1	RGCY	7 cut(s)	46, 58, 121, 141, 334, 485, 585
CviQI	GTAC	1 cut(s)	603
DdeI	CTNAG	1 cut(s)	650
DpnI	GATC	2 cut(s)	108, 528
DpnII	GATC	2 cut(s)	106, 526
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	46
EcoICRI	GAGCTC	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	48
FaeI	CATG	7 cut(s)	44, 356, 505, 615, 630, 700, 717
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FaqI	GGGAC	3 cut(s)	276, 299, 412
FatI	CATG	7 cut(s)	40, 352, 501, 611, 626, 696, 713
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	2 cut(s)	658, 679
FokI	GGATG	2 cut(s)	425, 516
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	2 cut(s)	658, 679
FspBI	CTAG	1 cut(s)	267
GluI	GCNGC	2 cut(s)	658, 679
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	58, 141
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	7 cut(s)	44, 356, 505, 615, 630, 700, 717
HindIII	AAGCTT	1 cut(s)	119
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	1 cut(s)	566
Hpy188I	TCNGA	3 cut(s)	8, 526, 653
Hpy188III	TCNNGA	1 cut(s)	235
HpyAV	CCTTC	3 cut(s)	183, 359, 496
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	7 cut(s)	87, 170, 480, 615, 624, 672, 700
HpyF10VI	GCNNNNNNNGC	3 cut(s)	456, 621, 678
HpyF3I	CTNAG	1 cut(s)	650
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	7 cut(s)	44, 356, 505, 615, 630, 700, 717
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	2 cut(s)	106, 526
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	1 cut(s)	434
LpnPI	CCDG	7 cut(s)	14, 151, 237, 315, 394, 436, 473
LweI	GCATC	2 cut(s)	644, 690
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	108, 528
MboI	GATC	2 cut(s)	106, 526
MboII	GAAGA	6 cut(s)	26, 123, 215, 289, 572, 575
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	8 cut(s)	61, 143, 154, 207, 215, 230, 371, 416
MnlI	CCTC	8 cut(s)	47, 178, 220, 250, 367, 389, 508, 609
MseI	TTAA	3 cut(s)	21, 123, 507
MslI	CAYNNNNRTG	2 cut(s)	411, 610
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	1 cut(s)	138
Mva1269I	GAATGC	2 cut(s)	167, 241
MwoI	GCNNNNNNNGC	3 cut(s)	456, 621, 678
NdeII	GATC	2 cut(s)	106, 526
NlaIII	CATG	7 cut(s)	44, 356, 505, 615, 630, 700, 717
NlaIV	GGNNCC	1 cut(s)	264
NspI	RCATGY	3 cut(s)	356, 615, 630
PaeI	GCATGC	1 cut(s)	356
PciI	ACATGT	1 cut(s)	626
PciSI	GCTCTTC	1 cut(s)	272
PctI	GAATGC	2 cut(s)	167, 241
PkrI	GCNGC	2 cut(s)	659, 680
PpuMI	RGGWCCY	1 cut(s)	263
PscI	ACATGT	1 cut(s)	626
Psp124BI	GAGCTC	1 cut(s)	48
Psp5II	RGGWCCY	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	2 cut(s)	56, 263
PspPPI	RGGWCCY	1 cut(s)	263
RsaI	GTAC	1 cut(s)	604
RsaNI	GTAC	1 cut(s)	603
RseI	CAYNNNNRTG	2 cut(s)	411, 610
SacI	GAGCTC	1 cut(s)	48
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	3 cut(s)	21, 123, 507
SatI	GCNGC	2 cut(s)	658, 679
Sau3AI	GATC	2 cut(s)	106, 526
Sau96I	GGNCC	2 cut(s)	56, 263
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	7 cut(s)	48, 69, 123, 175, 268, 455, 587
SfaNI	GCATC	2 cut(s)	644, 690
SfcI	CTRYAG	1 cut(s)	586
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	2 cut(s)	411, 610
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SphI	GCATGC	1 cut(s)	356
Sse9I	AATT	8 cut(s)	61, 143, 154, 207, 215, 230, 371, 416
SsiI	CCGC	2 cut(s)	658, 679
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	1 cut(s)	267
SstI	GAGCTC	1 cut(s)	48
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	234, 577
TasI	AATT	8 cut(s)	61, 143, 154, 207, 215, 230, 371, 416
TauI	GCSGC	2 cut(s)	660, 681
Tru1I	TTAA	3 cut(s)	21, 123, 507
Tru9I	TTAA	3 cut(s)	21, 123, 507
TspDTI	ATGAA	5 cut(s)	27, 378, 429, 573, 685
Vha464I	CTTAAG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	2 cut(s)	230, 416
XceI	RCATGY	3 cut(s)	356, 615, 630
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.