Rmu_sc0006558.1_g000019

ultrapetala

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006558.1
OG0006109
Physical Location & Seq
Forward (+)
97375 .. 97707
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006558.1_g000019.1.cds

Sequence Viewer

Length: 333 bp
atgaacagtattgacttgccaacctcaacaggtagacttgagtgccatgcaaggagtggagtgagaagatggaagggcaacatatgggataacaaggaagacaaaaaagtctctcttcagaaatcaggcctgttgagatattacaagcatgctgcgaatgaaagccactgggaccatcgtagaccaaatttcgtctatcgggatgaatttcttcgctgcagtgagtgtcagaaagagcgacggtttcgtctacgcacaatggatgagtgcagagctttccacaacacctcgacaaacataaattggagatgtgctgaccactatgacaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

13.38

Weight (kDa)

9.54

Isoelectric Point (pI)

72.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 107, 246
AccI GTMKAC 3 cut(s) 34, 181, 250
AcsI RAATTY 2 cut(s) 187, 206
AcuI CTGAAG 1 cut(s) 101
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw26I GTCTC 1 cut(s) 115
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 2 cut(s) 152, 216
ApoI RAATTY 2 cut(s) 187, 206
Asp700I GAANNNNTTC 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 172
AvaII GGWCC 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 139, 203
BccI CCATC 2 cut(s) 63, 183
BcoDI GTCTC 1 cut(s) 115
BfmI CTRYAG 1 cut(s) 217
BisI GCNGC 2 cut(s) 153, 217
BlsI GCNGC 2 cut(s) 154, 218
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 173
BmrI ACTGGG 1 cut(s) 178
BmuI ACTGGG 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 173
BseGI GGATG 2 cut(s) 208, 268
BseNI ACTGG 1 cut(s) 173
BseXI GCAGC 2 cut(s) 139, 203
BsgI GTGCAG 1 cut(s) 289
BshFI GGCC 1 cut(s) 129
BslFI GGGAC 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 1 cut(s) 129
BspANI GGCC 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 173
BspMAI CTGCAG 1 cut(s) 221
BsrI ACTGG 1 cut(s) 173
Bst4CI ACNGT 2 cut(s) 8, 243
Bst6I CTCTTC 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 150
BstF5I GGATG 2 cut(s) 208, 268
BstMAI GTCTC 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 152
BstSFI CTRYAG 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 139, 203
BstV2I GAAGAC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 129
BtsCI GGATG 2 cut(s) 208, 268
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 166, 226
Cac8I GCNNGC 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 172
CviAII CATG 2 cut(s) 47, 149
CviJI RGCY 3 cut(s) 129, 165, 275
CviKI_1 RGCY 3 cut(s) 129, 165, 275
DrdI GACNNNNNNGTC 2 cut(s) 107, 246
DseDI GACNNNNNNGTC 2 cut(s) 107, 246
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco147I AGGCCT 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 101
FaeI CATG 2 cut(s) 50, 152
FaiI YATR 6 cut(s) 48, 83, 85, 150, 299, 324
FalI AAGNNNNNCTT 2 cut(s) 99, 131
FaqI GGGAC 1 cut(s) 185
FatI CATG 2 cut(s) 46, 148
FauNDI CATATG 1 cut(s) 83
FblI GTMKAC 3 cut(s) 34, 181, 250
Fnu4HI GCNGC 2 cut(s) 153, 217
FokI GGATG 2 cut(s) 215, 275
Fsp4HI GCNGC 2 cut(s) 153, 217
GluI GCNGC 2 cut(s) 153, 217
HaeIII GGCC 1 cut(s) 129
Hin1II CATG 2 cut(s) 50, 152
Hpy166II GTNNAC 3 cut(s) 35, 182, 251
Hpy188I TCNGA 2 cut(s) 120, 231
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 3 cut(s) 35, 182, 251
Hpy99I CGWCG 1 cut(s) 243
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 2 cut(s) 8, 243
HpyCH4V TGCA 3 cut(s) 50, 219, 270
Hsp92II CATG 2 cut(s) 50, 152
LpnPI CCDG 4 cut(s) 15, 111, 143, 154
Lsp1109I GCAGC 2 cut(s) 139, 203
MboII GAAGA 4 cut(s) 78, 107, 110, 203
MluCI AATT 3 cut(s) 187, 206, 301
MnlI CCTC 2 cut(s) 34, 298
MroXI GAANNNNTTC 1 cut(s) 210
NdeI CATATG 1 cut(s) 83
NlaIII CATG 2 cut(s) 50, 152
NlaIV GGNNCC 1 cut(s) 173
NspI RCATGY 1 cut(s) 152
PaeI GCATGC 1 cut(s) 152
PceI AGGCCT 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 210
PkrI GCNGC 2 cut(s) 154, 218
PspN4I GGNNCC 1 cut(s) 173
PspPI GGNCC 1 cut(s) 172
PstI CTGCAG 1 cut(s) 221
SatI GCNGC 2 cut(s) 153, 217
Sau96I GGNCC 1 cut(s) 172
SetI ASST 4 cut(s) 26, 34, 277, 290
SfcI CTRYAG 1 cut(s) 217
SinI GGWCC 1 cut(s) 172
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SphI GCATGC 1 cut(s) 152
Sse9I AATT 3 cut(s) 187, 206, 301
SseBI AGGCCT 1 cut(s) 129
StuI AGGCCT 1 cut(s) 129
TaaI ACNGT 2 cut(s) 8, 243
TaqI TCGA 1 cut(s) 290
TasI AATT 3 cut(s) 187, 206, 301
TscAI CASTG 2 cut(s) 173, 226
TseI GCWGC 2 cut(s) 152, 216
TspDTI ATGAA 3 cut(s) 17, 174, 219
TspRI CASTG 2 cut(s) 173, 226
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 2 cut(s) 187, 206
XceI RCATGY 1 cut(s) 152
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
XmiI GTMKAC 3 cut(s) 34, 181, 250
XmnI GAANNNNTTC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.