AT2G21140

Proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010868
Physical Location & Seq
Reverse (-)
9060561 .. 9062093
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21140.1

Sequence Viewer

Length: 966 bp
ATGAGGATATTACCGAAAAGCGGAGGAGGTGCTCTTTGCCTCCTCTTTGTGTTTGCTCTTTGTTCGGTGGCTCATTCCCTTAGCTGTGACGTCAAGGTTGTTGGCGATGTCGAAGTCATTGGCTACTCAGAAATCAGCAAAATCAAGATCCCCAATGCATTCTCAGGACTTCGAGTTACGATAGAATGCAAGGCGGCCGATTCAAAAGGCCATTTTGTAACGAGGGGAAGCGGAGAAGTGGACGAAACAGGAAAGTTTCATCTTAATATTCCTCATGACATTGTCGGTGATGACGGAACTCTAAAAGAAGCTTGCTATGCTCATCTTCAAAGTGCCTTCGGCAACCCTTGTCCGGCCCACGATGGCCTTGAGGCCTCCAAGATCGTGTTTCTATCGAAATCCGGCCAAAACCACGTTTTGGGTCTCAAAAAAAGTCTTAAATTCTCACCAGAAGTTTGCATCTCAAAGTTCTTTTGGCATATGCCTAAGTTCCCTTTACCTCCTCCGCTTAATCTCCCACCGTTAACGTTTCCTAAGATCAAGAAGCCTTGTCCCCCAATTTACAAACCACCGGTGGTGATCCCTAAGAAGCCGTGTCCACCAAAGATTGCACATAAACCCATCTACAAGCCGCCGGTTCCCATCTACAAGCCTCCAGTGCCTATCTACAAGCCACCAGTGGTTATCCCCAAGAAACCGTGTCCACCAAAGATACACAAGCCCATCTACAAGCCACCCGTGCCTATCTACAAGCCTCCAGTGGTGATCCCAAAGAAGACATTTCCTCCACTTCACAAGCCGATCTACAAGCACCCGGTTCCTATCTACAAACCAATCTTCAAGCCGCCAGTGGTGGTGATTCCAAAGAAACCATGTCCACCACTTCCCAAGTTTCCACACTTCCCACCTAAATACATTCCACACCCTAAGTTCGGAAAATGGCCTCCTTTCCCTTCTCATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0030312 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

321

Amino Acids

35.51

Weight (kDa)

9.78

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 50 - 119 8.8e-07 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010868)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21140 AT4G38770
fragaria_vesca FvH4_2g01970
malus_domestica MD05G1116400.v1.1 MD10G1118600.v1.1
prunus_persica Prupe.8G160900_v2.0.a1
pyrus_communis pycom05g11060 pycom10g10270
rosa_chinensis RchiOBHm_Chr6g0245161
rosa_laevigata RLG00000015320
rosa_multiflora Rmu_sc0001288.1_g000002 Rmu_sc0015012.1_g000001 Rmu_ssc0000087.1_g000001
rosa_roxburghii Rroxscaffold_7G00215400
rosa_rugosa Rorug05G0512400
rosa_samantha Rh6AG027500 Rh6BG023600 Rh6CG022000 Rh6DG022100
rosa_wichuraiana Rw6G002320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 93
AccB7I CCANNNNNTGG 1 cut(s) 418
AciI CCGC 6 cut(s) 21, 194, 231, 506, 632, 845
AclI AACGTT 1 cut(s) 527
AclWI GGATC 3 cut(s) 142, 574, 760
AcoI YGGCCR 2 cut(s) 195, 403
AcsI RAATTY 1 cut(s) 440
AcyI GRCGYC 1 cut(s) 90
AfiI CCNNNNNNNGG 4 cut(s) 20, 352, 418, 932
AgeI ACCGGT 1 cut(s) 571
AgsI TTSAA 3 cut(s) 204, 329, 841
AluBI AGCT 2 cut(s) 84, 311
AluI AGCT 2 cut(s) 84, 311
Alw21I GWGCWC 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 3 cut(s) 142, 574, 760
AoxI GGCC 7 cut(s) 195, 208, 354, 364, 372, 403, 941
ApoI RAATTY 1 cut(s) 440
AsiGI ACCGGT 1 cut(s) 571
AspS9I GGNCC 1 cut(s) 355
AsuC2I CCSGG 1 cut(s) 815
AsuHPI GGTGA 5 cut(s) 299, 438, 589, 775, 868
BbsI GAAGAC 1 cut(s) 782
Bbv12I GWGCWC 1 cut(s) 34
BccI CCATC 4 cut(s) 356, 629, 650, 731
BceAI ACGGC 1 cut(s) 577
BcnI CCSGG 1 cut(s) 815
BcoDI GTCTC 1 cut(s) 428
BisI GCNGC 3 cut(s) 195, 632, 845
BlsI GCNGC 3 cut(s) 196, 633, 846
Bme1390I CCNGG 1 cut(s) 815
BmgT120I GGNCC 1 cut(s) 355
BmiI GGNNCC 2 cut(s) 639, 819
BmrFI CCNGG 1 cut(s) 815
BmsI GCATC 1 cut(s) 468
BpiI GAAGAC 1 cut(s) 782
BpmI CTGGAG 2 cut(s) 639, 741
Bpu10I CCTNAGC 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 815
BsaHI GRCGYC 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 428
BsaWI WCCGGW 1 cut(s) 571
BsaXI ACNNNNNCTCC 2 cut(s) 769, 799
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 352, 418, 932
Bse118I RCCGGY 2 cut(s) 571, 634
Bse1I ACTGG 4 cut(s) 656, 677, 758, 848
BseGI GGATG 1 cut(s) 958
BseLI CCNNNNNNNGG 4 cut(s) 20, 352, 418, 932
BseMII CTCAG 2 cut(s) 141, 177
BseNI ACTGG 4 cut(s) 656, 677, 758, 848
BseRI GAGGAG 3 cut(s) 32, 39, 492
BseX3I CGGCCG 1 cut(s) 195
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 7 cut(s) 197, 210, 356, 366, 374, 405, 943
BshTI ACCGGT 1 cut(s) 571
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 34
BsiSI CCGG 5 cut(s) 353, 402, 572, 635, 815
BslFI GGGAC 1 cut(s) 537
BslI CCNNNNNNNGG 4 cut(s) 20, 352, 418, 932
BsmAI GTCTC 1 cut(s) 428
BsmFI GGGAC 1 cut(s) 537
BsmI GAATGC 2 cut(s) 158, 191
BsnI GGCC 7 cut(s) 197, 210, 356, 366, 374, 405, 943
Bso31I GGTCTC 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 34
Bsp143I GATC 6 cut(s) 147, 381, 537, 579, 765, 801
BspACI CCGC 6 cut(s) 21, 194, 231, 506, 632, 845
BspANI GGCC 7 cut(s) 197, 210, 356, 366, 374, 405, 943
BspCNI CTCAG 2 cut(s) 140, 176
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 2 cut(s) 639, 819
BspPI GGATC 3 cut(s) 142, 574, 760
BspTNI GGTCTC 1 cut(s) 428
BsrFI RCCGGY 2 cut(s) 571, 634
BsrI ACTGG 4 cut(s) 656, 677, 758, 848
BssAI RCCGGY 2 cut(s) 571, 634
BssMI GATC 6 cut(s) 147, 381, 537, 579, 765, 801
BssNI GRCGYC 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 522, 699
BstACI GRCGYC 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 7 cut(s) 80, 127, 163, 486, 534, 585, 927
BstF5I GGATG 1 cut(s) 958
BstKTI GATC 6 cut(s) 150, 384, 540, 582, 768, 804
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 6 cut(s) 147, 381, 537, 579, 765, 801
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 3 cut(s) 317, 658, 739
BstSCI CCNGG 1 cut(s) 813
BstV2I GAAGAC 1 cut(s) 782
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BstZI CGGCCG 1 cut(s) 195
BsuRI GGCC 7 cut(s) 197, 210, 356, 366, 374, 405, 943
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 958
BtsIMutI CAGTG 4 cut(s) 663, 684, 765, 855
Cac8I GCNNGC 1 cut(s) 313
CciI TCATGA 1 cut(s) 274
Cfr10I RCCGGY 2 cut(s) 571, 634
Cfr13I GGNCC 1 cut(s) 355
CspAI ACCGGT 1 cut(s) 571
CviAII CATG 2 cut(s) 275, 873
DdeI CTNAG 7 cut(s) 80, 127, 163, 486, 534, 585, 927
DpnI GATC 6 cut(s) 149, 383, 539, 581, 767, 803
DpnII GATC 6 cut(s) 147, 381, 537, 579, 765, 801
EaeI YGGCCR 2 cut(s) 195, 403
EagI CGGCCG 1 cut(s) 195
EclXI CGGCCG 1 cut(s) 195
Eco147I AGGCCT 1 cut(s) 374
Eco31I GGTCTC 1 cut(s) 428
Eco52I CGGCCG 1 cut(s) 195
EcoT22I ATGCAT 1 cut(s) 160
FaeI CATG 2 cut(s) 278, 876
FaiI YATR 6 cut(s) 276, 318, 480, 482, 615, 874
FaqI GGGAC 1 cut(s) 537
FatI CATG 2 cut(s) 274, 872
FauNDI CATATG 1 cut(s) 480
Fnu4HI GCNGC 3 cut(s) 195, 632, 845
FokI GGATG 1 cut(s) 945
Fsp4HI GCNGC 3 cut(s) 195, 632, 845
GluI GCNGC 3 cut(s) 195, 632, 845
GsuI CTGGAG 2 cut(s) 639, 741
HaeIII GGCC 7 cut(s) 197, 210, 356, 366, 374, 405, 943
HapII CCGG 5 cut(s) 353, 402, 572, 635, 815
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 2 cut(s) 278, 876
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HindIII AAGCTT 1 cut(s) 309
HinfI GANTC 2 cut(s) 200, 859
HpaI GTTAAC 1 cut(s) 525
HpaII CCGG 5 cut(s) 353, 402, 572, 635, 815
HphI GGTGA 5 cut(s) 299, 438, 589, 775, 868
Hpy166II GTNNAC 5 cut(s) 241, 525, 599, 704, 878
Hpy188I TCNGA 2 cut(s) 130, 935
Hpy188III TCNNGA 4 cut(s) 145, 165, 275, 541
Hpy8I GTNNAC 5 cut(s) 241, 525, 599, 704, 878
HpyAV CCTTC 2 cut(s) 346, 963
HpyCH4III ACNGT 2 cut(s) 522, 699
HpyCH4IV ACGT 3 cut(s) 90, 414, 527
HpyCH4V TGCA 4 cut(s) 158, 189, 459, 611
HpyF10VI GCNNNNNNNGC 3 cut(s) 317, 658, 739
HpyF3I CTNAG 7 cut(s) 80, 127, 163, 486, 534, 585, 927
HpySE526I ACGT 3 cut(s) 90, 414, 527
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 2 cut(s) 278, 876
KspAI GTTAAC 1 cut(s) 525
Kzo9I GATC 6 cut(s) 147, 381, 537, 579, 765, 801
LweI GCATC 1 cut(s) 468
MaeII ACGT 3 cut(s) 90, 414, 527
MaeIII GTNAC 3 cut(s) 86, 175, 217
MalI GATC 6 cut(s) 149, 383, 539, 581, 767, 803
MboI GATC 6 cut(s) 147, 381, 537, 579, 765, 801
MboII GAAGA 3 cut(s) 317, 787, 829
MflI RGATCY 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 34
MluCI AATT 2 cut(s) 440, 558
Mph1103I ATGCAT 1 cut(s) 160
MseI TTAA 4 cut(s) 264, 438, 510, 524
MspI CCGG 5 cut(s) 353, 402, 572, 635, 815
MspR9I CCNGG 1 cut(s) 815
Mva1269I GAATGC 2 cut(s) 158, 191
MwoI GCNNNNNNNGC 3 cut(s) 317, 658, 739
NciI CCSGG 1 cut(s) 815
NdeI CATATG 1 cut(s) 480
NdeII GATC 6 cut(s) 147, 381, 537, 579, 765, 801
NlaIII CATG 2 cut(s) 278, 876
NlaIV GGNNCC 2 cut(s) 639, 819
NmuCI GTSAC 1 cut(s) 86
NsiI ATGCAT 1 cut(s) 160
PagI TCATGA 1 cut(s) 274
PceI AGGCCT 1 cut(s) 374
PctI GAATGC 2 cut(s) 158, 191
PfeI GAWTC 2 cut(s) 200, 859
PflFI GACNNNGTC 1 cut(s) 281
PflMI CCANNNNNTGG 1 cut(s) 418
PinAI ACCGGT 1 cut(s) 571
PkrI GCNGC 3 cut(s) 196, 633, 846
Psp1406I AACGTT 1 cut(s) 527
PspN4I GGNNCC 2 cut(s) 639, 819
PspPI GGNCC 1 cut(s) 355
PsuI RGATCY 1 cut(s) 147
PsyI GACNNNGTC 1 cut(s) 281
SaqAI TTAA 4 cut(s) 264, 438, 510, 524
SatI GCNGC 3 cut(s) 195, 632, 845
Sau3AI GATC 6 cut(s) 147, 381, 537, 579, 765, 801
Sau96I GGNCC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 815
SduI GDGCHC 1 cut(s) 34
SetI ASST 9 cut(s) 31, 86, 93, 99, 313, 417, 502, 530, 910
SfaNI GCATC 1 cut(s) 468
SgrAI CRCCGGYG 1 cut(s) 571
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 2 cut(s) 440, 558
SseBI AGGCCT 1 cut(s) 374
SsiI CCGC 6 cut(s) 21, 194, 231, 506, 632, 845
SspI AATATT 1 cut(s) 268
StuI AGGCCT 1 cut(s) 374
StyD4I CCNGG 1 cut(s) 813
TaaI ACNGT 2 cut(s) 522, 699
TaiI ACGT 3 cut(s) 93, 417, 530
TaqI TCGA 3 cut(s) 111, 172, 395
TasI AATT 2 cut(s) 440, 558
TauI GCSGC 3 cut(s) 197, 634, 847
TfiI GAWTC 2 cut(s) 200, 859
Tru1I TTAA 4 cut(s) 264, 438, 510, 524
Tru9I TTAA 4 cut(s) 264, 438, 510, 524
TscAI CASTG 4 cut(s) 663, 684, 765, 855
TseFI GTSAC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 248
TspGWI ACGGA 1 cut(s) 309
TspRI CASTG 4 cut(s) 663, 684, 765, 855
Tth111I GACNNNGTC 1 cut(s) 281
Van91I CCANNNNNTGG 1 cut(s) 418
XapI RAATTY 1 cut(s) 440
ZraI GACGTC 1 cut(s) 91
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.