Rmu_ssc0000087.1_g000001

Proline-rich protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000087.1
Physical Location & Seq
Forward (+)
699 .. 9117
8419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000087.1_g000001.1.cds

Sequence Viewer

Length: 2112 bp
atgaagatctctcatctgtgcctcttcttgtccttgctgcttttcggagcgagcagcttttgctatgctgatgatcataagacagttgaggtagtcgggtttggagaatgcactgactgtgctgagaagagcattaagaccagtcatgctttttcaggtcttggtgttacgatcgactgcaaggccgaaagcggcctcttcgagaggagaggggccggcgagctcaatgaggagggcaagttttcagtgtccatcccaaaggagattgtgaaagatggaggagatggactgaaggaggagtgctatgcacagctccacaatgcaaaggccacaccatgcgctgctcatgatggacttgaatccaccaaagtggtattcaagtctaaaaacagtgatgggaaacaaacctttggaattgttggtactaaactaaagttttcaccatctacatgcacttctgctttcttttggcctccctttaagcacccacttcacaaatggaccaaaccacatcctctctttggacacccaatattccctttccctccaaaaaaattccctccattcccacctaaacctaagattactattcctccattctataagaagccctgccctcccaagatcccaatttacgaaaagcccctccccccgccagtcccaatttacgaaaagcccctccccccaccagtcccaatctacaagaagccgctccctcccccatcgcctttcttagtaaactgtcttgcttctctccgacgtatgagtacgatatgggggctggtaagggaagtatcaaaaggagtggtgggtttttgggagaagatggaagaggtggtgaatggtctgtctgccaaactggtaatttcagaggcggaggactttaaggtggttaagattgacgatgtggaggatatgtctctaaagaagtactggttagtggggagacttctaacttcgaaacctttcaacaaggagtcacttcggagtactatgaagaggatctggcatattaaaggtgaggtttcaatttttgaatgggagaattctggcaggtttgttttttcttttcagtttgatgccgataggaggaaaatccttagaggcatcccatggacttttgataatgccttattgttgttctcggctatggatatgaaatctgatcctttgaaagtacctttgatgagaaaattggtggacgttgaccctggggtgaatggagactgctctgcgagctttctcttaatccgagtggggttggatgtcaatgtgcctctaagaagatggattaggcttcaacttgagaattcaggagaggaagtcaaactcttactggattacgagaaccttccctacttttgtttctattgtggttgtttggatcatgttagctcttgctgtgaattgaaaaaggcggggaaaatacaggaagtgcagccaagagatgagtttctaggaagcggttgtggtctgaatagtgaaatggtggtggatggtgagttggcaggggatcaccttgaggcatcggaggcaaagcggaggtggatggcggtccctcctccttctttagacgtgcctgataatatgaaggtaattgaggaaagagaaattattacgggaaagaatattggaggatccaatcagtcattattacaaaagcattcaccgcagtctcaggcggggttggagaatattcataccctaaatcgtcacttgagatccgacatcctctcagctttgatttttgaagatttacagattggcgggacgttaggaggcgtaagtttaagagctgcttcaaatttgaagtcggggggtgttaatgggcctgatgagctggcaagtcctttagtaaaacaacaggaaatttggcccattttgaaacttgagggggtcaataggaatcacaggttggtggaggactctcaggttgtggagcaaagtggggatgcagtggtttataagagagttggaaagaaaaagggagagaagaaagaagcgttaggaaagcaggcagcgtcaaagggggagaatgaaggtcatggaggtcgggttggcttcttcgtgggaggtcgggggagacgaaggagtaaggcttctcctaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

703

Amino Acids

78.02

Weight (kDa)

8.89

Isoelectric Point (pI)

50.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010868)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1965
Acc36I ACCTGC 1 cut(s) 1044
AccBSI CCGCTC 1 cut(s) 712
AclWI GGATC 8 cut(s) 619, 1010, 1160, 1392, 1521, 1632, 1645, 1716
AcsI RAATTY 5 cut(s) 554, 1045, 1309, 1804, 1869
AcuI CTGAAG 1 cut(s) 311
AfaI GTAC 5 cut(s) 424, 769, 932, 991, 1179
AfiI CCNNNNNNNGG 2 cut(s) 521, 1089
AjiI CACGTC 1 cut(s) 1576
AjnI CCWGG 1 cut(s) 1210
AjuI GAANNNNNNNTTGG 4 cut(s) 359, 391, 1898, 1930
AleI CACNNNNGTG 1 cut(s) 368
AluBI AGCT 8 cut(s) 57, 223, 313, 1239, 1395, 1739, 1796, 1840
AluI AGCT 8 cut(s) 57, 223, 313, 1239, 1395, 1739, 1796, 1840
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 5 cut(s) 924, 940, 1218, 1680, 2077
AlwI GGATC 8 cut(s) 619, 1010, 1160, 1392, 1521, 1632, 1645, 1716
AoxI GGCC 7 cut(s) 183, 193, 213, 327, 470, 1829, 1874
ApeKI GCWGC 6 cut(s) 37, 54, 341, 1438, 1796, 2018
ApoI RAATTY 5 cut(s) 554, 1045, 1309, 1804, 1869
ArsI GACNNNNNNTTYG 2 cut(s) 1796, 1828
Asp700I GAANNNNTTC 1 cut(s) 965
AspLEI GCGC 1 cut(s) 341
AspS9I GGNCC 5 cut(s) 213, 501, 1555, 1829, 1875
AsuHPI GGTGA 7 cut(s) 432, 850, 1031, 1228, 1508, 1511, 1659
AsuII TTCGAA 1 cut(s) 959
AvaII GGWCC 2 cut(s) 501, 1555
BamHI GGATCC 1 cut(s) 1637
BanII GRGCYC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 6 cut(s) 24, 66, 328, 1450, 1783, 2030
BciT130I CCWGG 1 cut(s) 1212
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 5 cut(s) 924, 940, 1218, 1680, 2077
BfaI CTAG 1 cut(s) 1457
BfuAI ACCTGC 1 cut(s) 1044
BglII AGATCT 1 cut(s) 6
BisI GCNGC 8 cut(s) 38, 55, 193, 342, 710, 1439, 1797, 2019
BlsI GCNGC 8 cut(s) 39, 56, 194, 343, 711, 1440, 1798, 2020
BmcAI AGTACT 2 cut(s) 932, 991
Bme1390I CCNGG 1 cut(s) 1212
Bme18I GGWCC 2 cut(s) 501, 1555
BmgBI CACGTC 1 cut(s) 1576
BmgT120I GGNCC 5 cut(s) 213, 501, 1555, 1829, 1875
BmiI GGNNCC 3 cut(s) 214, 1557, 1639
BmrFI CCNGG 1 cut(s) 1212
BmsI GCATC 4 cut(s) 1069, 1116, 1535, 1942
Bpu14I TTCGAA 1 cut(s) 959
BpuEI CTTGAG 4 cut(s) 1325, 1541, 1738, 1910
BsaJI CCNNGG 3 cut(s) 1112, 1210, 1211
Bsc4I CCNNNNNNNGG 2 cut(s) 521, 1089
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 6 cut(s) 141, 656, 689, 864, 938, 1341
BseBI CCWGG 1 cut(s) 1212
BseDI CCNNGG 3 cut(s) 1112, 1210, 1211
BseGI GGATG 8 cut(s) 252, 511, 1107, 1270, 1501, 1554, 1728, 1957
BseLI CCNNNNNNNGG 2 cut(s) 521, 1089
BseMII CTCAG 4 cut(s) 114, 1691, 1749, 1943
BseNI ACTGG 6 cut(s) 141, 656, 689, 864, 938, 1341
BseRI GAGGAG 5 cut(s) 220, 245, 294, 311, 1551
BseXI GCAGC 6 cut(s) 24, 66, 328, 1450, 1783, 2030
BsgI GTGCAG 1 cut(s) 1457
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 7 cut(s) 185, 195, 215, 329, 472, 1831, 1876
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 4 cut(s) 644, 677, 1541, 1783
BslI CCNNNNNNNGG 2 cut(s) 521, 1089
BsmAI GTCTC 5 cut(s) 924, 940, 1218, 1680, 2077
BsmBI CGTCTC 1 cut(s) 2077
BsmFI GGGAC 4 cut(s) 644, 677, 1541, 1783
BsmI GAATGC 2 cut(s) 113, 1663
BsnI GGCC 7 cut(s) 185, 195, 215, 329, 472, 1831, 1876
Bsp119I TTCGAA 1 cut(s) 959
Bsp1286I GDGCHC 1 cut(s) 225
Bsp19I CCATGG 1 cut(s) 1112
BspANI GGCC 7 cut(s) 185, 195, 215, 329, 472, 1831, 1876
BspCNI CTCAG 4 cut(s) 115, 1690, 1748, 1942
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 3 cut(s) 214, 1557, 1639
BspMI ACCTGC 1 cut(s) 1044
BspPI GGATC 8 cut(s) 619, 1010, 1160, 1392, 1521, 1632, 1645, 1716
BspQI GCTCTTC 1 cut(s) 122
BspT104I TTCGAA 1 cut(s) 959
BsrBI CCGCTC 1 cut(s) 712
BsrFI RCCGGY 1 cut(s) 215
BsrI ACTGG 6 cut(s) 141, 656, 689, 864, 938, 1341
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 3 cut(s) 1112, 1210, 1211
BssT1I CCWWGG 1 cut(s) 1112
Bst2UI CCWGG 1 cut(s) 1212
Bst4CI ACNGT 4 cut(s) 85, 119, 392, 743
Bst6I CTCTTC 5 cut(s) 29, 122, 203, 825, 992
BstAPI GCANNNNNTGC 1 cut(s) 60
BstBI TTCGAA 1 cut(s) 959
BstC8I GCNNGC 6 cut(s) 52, 217, 221, 1237, 1842, 2016
BstDEI CTNAG 8 cut(s) 123, 579, 733, 1100, 1280, 1677, 1735, 1929
BstDSI CCRYGG 1 cut(s) 1112
BstF5I GGATG 8 cut(s) 252, 511, 1107, 1270, 1501, 1554, 1728, 1957
BstHHI GCGC 1 cut(s) 341
BstMAI GTCTC 5 cut(s) 924, 940, 1218, 1680, 2077
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 5 cut(s) 60, 1236, 1532, 1669, 1837
BstNI CCWGG 1 cut(s) 1212
BstNSI RCATGY 1 cut(s) 453
BstSCI CCNGG 1 cut(s) 1210
BstV1I GCAGC 6 cut(s) 24, 66, 328, 1450, 1783, 2030
BstX2I RGATCY 5 cut(s) 6, 624, 1002, 1637, 1721
BstXI CCANNNNNNTGG 1 cut(s) 370
BstYI RGATCY 5 cut(s) 6, 624, 1002, 1637, 1721
BsuRI GGCC 7 cut(s) 185, 195, 215, 329, 472, 1831, 1876
BtgI CCRYGG 1 cut(s) 1112
BtgZI GCGATG 1 cut(s) 708
BtrI CACGTC 1 cut(s) 1576
BtsCI GGATG 8 cut(s) 252, 511, 1107, 1270, 1501, 1554, 1728, 1957
BtsI GCAGTG 1 cut(s) 1962
BtsIMutI CAGTG 4 cut(s) 111, 252, 397, 1962
BveI ACCTGC 1 cut(s) 1044
Cac8I GCNNGC 6 cut(s) 52, 217, 221, 1237, 1842, 2016
CciI TCATGA 1 cut(s) 346
CfoI GCGC 1 cut(s) 341
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 5 cut(s) 213, 501, 1555, 1829, 1875
CseI GACGC 1 cut(s) 2010
Csp6I GTAC 5 cut(s) 423, 768, 931, 990, 1178
CspCI CAANNNNNGTGG 2 cut(s) 786, 821
CviAII CATG 7 cut(s) 146, 336, 347, 450, 1113, 1388, 2045
CviQI GTAC 5 cut(s) 423, 768, 931, 990, 1178
DdeI CTNAG 8 cut(s) 123, 579, 733, 1100, 1280, 1677, 1735, 1929
Eam1104I CTCTTC 5 cut(s) 29, 122, 203, 825, 992
EarI CTCTTC 5 cut(s) 29, 122, 203, 825, 992
EciI GGCGGA 1 cut(s) 890
Ecl136II GAGCTC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 1112
Eco24I GRGCYC 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 501, 1555
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 223
EcoRI GAATTC 2 cut(s) 1045, 1309
EcoRII CCWGG 1 cut(s) 1210
EcoT14I CCWWGG 1 cut(s) 1112
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 1112
Esp3I CGTCTC 1 cut(s) 2077
FaeI CATG 7 cut(s) 149, 339, 350, 453, 1116, 1391, 2048
FalI AAGNNNNNCTT 2 cut(s) 1783, 1815
FaqI GGGAC 4 cut(s) 644, 677, 1541, 1783
FatI CATG 7 cut(s) 145, 335, 346, 449, 1112, 1387, 2044
FauI CCCGC 4 cut(s) 660, 1411, 1675, 1760
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 8 cut(s) 38, 55, 193, 342, 710, 1439, 1797, 2019
FokI GGATG 8 cut(s) 239, 498, 1094, 1277, 1508, 1561, 1715, 1964
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 8 cut(s) 38, 55, 193, 342, 710, 1439, 1797, 2019
FspBI CTAG 1 cut(s) 1457
GlaI GCGC 1 cut(s) 340
GluI GCNGC 8 cut(s) 38, 55, 193, 342, 710, 1439, 1797, 2019
HaeIII GGCC 7 cut(s) 185, 195, 215, 329, 472, 1831, 1876
HapII CCGG 1 cut(s) 216
HgaI GACGC 1 cut(s) 2010
HhaI GCGC 1 cut(s) 341
Hin1II CATG 7 cut(s) 149, 339, 350, 453, 1116, 1391, 2048
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HincII GTYRAC 1 cut(s) 1207
HindII GTYRAC 1 cut(s) 1207
HinfI GANTC 4 cut(s) 359, 977, 1906, 1925
HpaII CCGG 1 cut(s) 216
HphI GGTGA 7 cut(s) 432, 850, 1031, 1228, 1508, 1511, 1659
Hpy166II GTNNAC 3 cut(s) 739, 1201, 1207
Hpy188I TCNGA 9 cut(s) 47, 758, 871, 987, 1165, 1253, 1476, 1531, 1726
Hpy188III TCNNGA 3 cut(s) 202, 347, 1314
Hpy8I GTNNAC 3 cut(s) 739, 1201, 1207
Hpy99I CGWCG 1 cut(s) 762
HpyAV CCTTC 6 cut(s) 286, 1361, 1575, 1585, 2033, 2082
HpyCH4III ACNGT 4 cut(s) 85, 119, 392, 743
HpyCH4IV ACGT 4 cut(s) 760, 1203, 1575, 1772
HpyCH4V TGCA 7 cut(s) 111, 180, 308, 323, 453, 1438, 1955
HpyF10VI GCNNNNNNNGC 5 cut(s) 60, 1236, 1532, 1669, 1837
HpyF3I CTNAG 8 cut(s) 123, 579, 733, 1100, 1280, 1677, 1735, 1929
HpySE526I ACGT 4 cut(s) 760, 1203, 1575, 1772
Hsp92II CATG 7 cut(s) 149, 339, 350, 453, 1116, 1391, 2048
HspAI GCGC 1 cut(s) 339
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 73
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 4 cut(s) 47, 318, 717, 1939
Lsp1109I GCAGC 6 cut(s) 24, 66, 328, 1450, 1783, 2030
LweI GCATC 4 cut(s) 1069, 1116, 1535, 1942
MaeI CTAG 1 cut(s) 1457
MaeII ACGT 4 cut(s) 760, 1203, 1575, 1772
MaeIII GTNAC 3 cut(s) 166, 978, 1712
MbiI CCGCTC 1 cut(s) 712
MflI RGATCY 5 cut(s) 6, 624, 1002, 1637, 1721
MhlI GDGCHC 1 cut(s) 225
MlyI GAGTC 2 cut(s) 986, 1919
MmeI TCCRAC 5 cut(s) 781, 1242, 1668, 1749, 1954
MroNI GCCGGC 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 965
MseI TTAA 8 cut(s) 135, 480, 885, 894, 1014, 1247, 1790, 1824
MslI CAYNNNNRTG 2 cut(s) 368, 448
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 1212
Mva1269I GAATGC 2 cut(s) 113, 1663
MvaI CCWGG 1 cut(s) 1212
MwoI GCNNNNNNNGC 5 cut(s) 60, 1236, 1532, 1669, 1837
NaeI GCCGGC 1 cut(s) 217
NcoI CCATGG 1 cut(s) 1112
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 7 cut(s) 149, 339, 350, 453, 1116, 1391, 2048
NlaIV GGNNCC 3 cut(s) 214, 1557, 1639
NmeAIII GCCGAG 1 cut(s) 1124
NmuCI GTSAC 2 cut(s) 978, 1712
NspI RCATGY 1 cut(s) 453
NspV TTCGAA 1 cut(s) 959
OliI CACNNNNGTG 1 cut(s) 368
PagI TCATGA 1 cut(s) 346
PasI CCCWGGG 1 cut(s) 1211
PciSI GCTCTTC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 1 cut(s) 2083
PctI GAATGC 2 cut(s) 113, 1663
PdiI GCCGGC 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 965
PfeI GAWTC 2 cut(s) 359, 1906
PkrI GCNGC 8 cut(s) 39, 56, 194, 343, 711, 1440, 1798, 2020
Ple19I CGATCG 1 cut(s) 174
PleI GAGTC 2 cut(s) 985, 1919
PpsI GAGTC 2 cut(s) 985, 1919
PsiI TTATAA 1 cut(s) 1965
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 1210
PspGI CCWGG 1 cut(s) 1210
PspN4I GGNNCC 3 cut(s) 214, 1557, 1639
PspPI GGNCC 5 cut(s) 213, 501, 1555, 1829, 1875
PsrI GAACNNNNNNTAC 2 cut(s) 1340, 1372
PsuI RGATCY 5 cut(s) 6, 624, 1002, 1637, 1721
PvuI CGATCG 1 cut(s) 174
RsaI GTAC 5 cut(s) 424, 769, 932, 991, 1179
RsaNI GTAC 5 cut(s) 423, 768, 931, 990, 1178
RseI CAYNNNNRTG 2 cut(s) 368, 448
SacI GAGCTC 1 cut(s) 225
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 8 cut(s) 135, 480, 885, 894, 1014, 1247, 1790, 1824
SatI GCNGC 8 cut(s) 38, 55, 193, 342, 710, 1439, 1797, 2019
Sau96I GGNCC 5 cut(s) 213, 501, 1555, 1829, 1875
ScaI AGTACT 2 cut(s) 932, 991
SchI GAGTC 2 cut(s) 986, 1919
ScrFI CCNGG 1 cut(s) 1212
SduI GDGCHC 1 cut(s) 225
SfaNI GCATC 4 cut(s) 1069, 1116, 1535, 1942
SfuI TTCGAA 1 cut(s) 959
SinI GGWCC 2 cut(s) 501, 1555
SmiMI CAYNNNNRTG 2 cut(s) 368, 448
SmlI CTYRAG 4 cut(s) 1304, 1520, 1717, 1889
SmoI CTYRAG 4 cut(s) 1304, 1520, 1717, 1889
SspI AATATT 3 cut(s) 534, 1630, 1696
SspMI CTAG 1 cut(s) 1457
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 1210
StyI CCWWGG 1 cut(s) 1112
TaaI ACNGT 4 cut(s) 85, 119, 392, 743
TaiI ACGT 4 cut(s) 763, 1206, 1578, 1775
TaqI TCGA 3 cut(s) 174, 201, 959
TatI WGTACW 2 cut(s) 930, 989
TauI GCSGC 2 cut(s) 195, 712
TfiI GAWTC 2 cut(s) 359, 1906
Tru1I TTAA 8 cut(s) 135, 480, 885, 894, 1014, 1247, 1790, 1824
Tru9I TTAA 8 cut(s) 135, 480, 885, 894, 1014, 1247, 1790, 1824
TscAI CASTG 4 cut(s) 118, 252, 397, 1962
TseFI GTSAC 2 cut(s) 978, 1712
TseI GCWGC 6 cut(s) 37, 54, 341, 1438, 1796, 2018
Tsp45I GTSAC 2 cut(s) 978, 1712
TspDTI ATGAA 6 cut(s) 17, 1010, 1172, 1604, 1688, 2052
TspRI CASTG 4 cut(s) 118, 252, 397, 1962
VpaK11BI GGWCC 2 cut(s) 501, 1555
XapI RAATTY 5 cut(s) 554, 1045, 1309, 1804, 1869
XceI RCATGY 1 cut(s) 453
XcmI CCANNNNNNNNNTGG 1 cut(s) 495
XmnI GAANNNNTTC 1 cut(s) 965
XspI CTAG 1 cut(s) 1457
ZrmI AGTACT 2 cut(s) 932, 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.