Rmu_sc0015012.1_g000001

Proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015012.1
OG0010868
Physical Location & Seq
Reverse (-)
2 .. 746
745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015012.1_g000001.1.cds

Sequence Viewer

Length: 653 bp
atgaagatttctcatctgtgcctcttcttgtccttgctgcttttcggagcgagcagcttttgctatgctgatgatcataagactgttgaggtagtcgggtttggagaatgtactgactgtgctgagaagagcattaagaccagtcatgctttttcaggtcttggtgttacgatcgactgcaaggccgaaagcggcctcttcgagaggagaggggccggcgagctcaatgaggagggcaagttttcagtgtccatcccaaaggagattgtgaaagatggaggagatggactgaaggaggagtgctatgcacagctccacaatgcaaaggccacaccatgtgctgctcatgatggacttgaatccaccaaagtggtattcaagtctaaaaacagtgatgggaaacaaacctttggaattgttggtactaaactgaagttttcaccatctacgtgcacttctgctttcttttggcctccctttaagcacccacttcccaaatggaccaaaccacatcctctctttggacacccaatattccctttccctccaaaaaaattccctccattcccaccgaaacctaagattactattcctccattctataagaagccctgccctcccaagatcccaatttacgaaaagcccctcccccc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

218

Amino Acids

23.97

Weight (kDa)

8.97

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010868)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21140 AT4G38770
fragaria_vesca FvH4_2g01970
malus_domestica MD05G1116400.v1.1 MD10G1118600.v1.1
prunus_persica Prupe.8G160900_v2.0.a1
pyrus_communis pycom05g11060 pycom10g10270
rosa_chinensis RchiOBHm_Chr6g0245161
rosa_laevigata RLG00000015320
rosa_multiflora Rmu_sc0001288.1_g000002 Rmu_sc0015012.1_g000001 Rmu_ssc0000087.1_g000001
rosa_roxburghii Rroxscaffold_7G00215400
rosa_rugosa Rorug05G0512400
rosa_samantha Rh6AG027500 Rh6BG023600 Rh6CG022000 Rh6DG022100
rosa_wichuraiana Rw6G002320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AclWI GGATC 1 cut(s) 619
AcsI RAATTY 1 cut(s) 554
AcuI CTGAAG 2 cut(s) 311, 452
AdeI CACNNNGTG 1 cut(s) 338
AfaI GTAC 2 cut(s) 112, 424
AfiI CCNNNNNNNGG 1 cut(s) 521
AgsI TTSAA 2 cut(s) 359, 379
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AleI CACNNNNGTG 1 cut(s) 368
AluBI AGCT 3 cut(s) 57, 223, 313
AluI AGCT 3 cut(s) 57, 223, 313
Alw21I GWGCWC 2 cut(s) 225, 455
Alw44I GTGCAC 1 cut(s) 451
AlwI GGATC 1 cut(s) 619
AoxI GGCC 5 cut(s) 183, 193, 213, 327, 470
ApaLI GTGCAC 1 cut(s) 451
ApeKI GCWGC 3 cut(s) 37, 54, 341
ApoI RAATTY 1 cut(s) 554
AspS9I GGNCC 2 cut(s) 213, 501
AsuHPI GGTGA 1 cut(s) 432
AvaII GGWCC 1 cut(s) 501
BaeGI GKGCMC 1 cut(s) 455
BanII GRGCYC 1 cut(s) 225
Bbv12I GWGCWC 2 cut(s) 225, 455
BbvI GCAGC 3 cut(s) 24, 66, 328
BccI CCATC 6 cut(s) 260, 269, 278, 344, 389, 451
BclI TGATCA 1 cut(s) 73
BisI GCNGC 4 cut(s) 38, 55, 193, 342
BlsI GCNGC 4 cut(s) 39, 56, 194, 343
Bme18I GGWCC 1 cut(s) 501
BmgT120I GGNCC 2 cut(s) 213, 501
BmiI GGNNCC 1 cut(s) 214
BsaAI YACGTR 1 cut(s) 450
BsaXI ACNNNNNCTCC 4 cut(s) 224, 254, 577, 607
Bsc4I CCNNNNNNNGG 1 cut(s) 521
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 141
BseGI GGATG 2 cut(s) 252, 511
BseLI CCNNNNNNNGG 1 cut(s) 521
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 141
BseRI GAGGAG 4 cut(s) 220, 245, 294, 311
BseSI GKGCMC 1 cut(s) 455
BseXI GCAGC 3 cut(s) 24, 66, 328
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 5 cut(s) 185, 195, 215, 329, 472
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 2 cut(s) 225, 455
BsiSI CCGG 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 521
BsnI GGCC 5 cut(s) 185, 195, 215, 329, 472
Bsp1286I GDGCHC 2 cut(s) 225, 455
Bsp143I GATC 3 cut(s) 73, 171, 624
BspACI CCGC 1 cut(s) 192
BspANI GGCC 5 cut(s) 185, 195, 215, 329, 472
BspCNI CTCAG 1 cut(s) 115
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 214
BspPI GGATC 1 cut(s) 619
BspQI GCTCTTC 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 215
BsrI ACTGG 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 215
BssMI GATC 3 cut(s) 73, 171, 624
Bst4CI ACNGT 3 cut(s) 85, 119, 392
Bst6I CTCTTC 3 cut(s) 29, 122, 203
BstAPI GCANNNNNTGC 1 cut(s) 60
BstBAI YACGTR 1 cut(s) 450
BstC8I GCNNGC 3 cut(s) 52, 217, 221
BstDEI CTNAG 2 cut(s) 123, 579
BstF5I GGATG 2 cut(s) 252, 511
BstKTI GATC 3 cut(s) 76, 174, 627
BstMBI GATC 3 cut(s) 73, 171, 624
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstSLI GKGCMC 1 cut(s) 455
BstV1I GCAGC 3 cut(s) 24, 66, 328
BstX2I RGATCY 1 cut(s) 624
BstXI CCANNNNNNTGG 1 cut(s) 370
BstYI RGATCY 1 cut(s) 624
BsuRI GGCC 5 cut(s) 185, 195, 215, 329, 472
BtsCI GGATG 2 cut(s) 252, 511
BtsIMutI CAGTG 2 cut(s) 252, 397
Cac8I GCNNGC 3 cut(s) 52, 217, 221
CciI TCATGA 1 cut(s) 346
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 2 cut(s) 213, 501
Csp6I GTAC 2 cut(s) 111, 423
CviAII CATG 3 cut(s) 146, 336, 347
CviQI GTAC 2 cut(s) 111, 423
DdeI CTNAG 2 cut(s) 123, 579
DpnI GATC 3 cut(s) 75, 173, 626
DpnII GATC 3 cut(s) 73, 171, 624
DraIII CACNNNGTG 1 cut(s) 338
Eam1104I CTCTTC 3 cut(s) 29, 122, 203
EarI CTCTTC 3 cut(s) 29, 122, 203
Ecl136II GAGCTC 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 501
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 2 cut(s) 311, 452
EcoICRI GAGCTC 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 225
FaeI CATG 3 cut(s) 149, 339, 350
FaiI YATR 7 cut(s) 66, 78, 147, 306, 337, 348, 603
FatI CATG 3 cut(s) 145, 335, 346
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 4 cut(s) 38, 55, 193, 342
FokI GGATG 2 cut(s) 239, 498
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 4 cut(s) 38, 55, 193, 342
GluI GCNGC 4 cut(s) 38, 55, 193, 342
HaeIII GGCC 5 cut(s) 185, 195, 215, 329, 472
HapII CCGG 1 cut(s) 216
Hin1II CATG 3 cut(s) 149, 339, 350
HinfI GANTC 1 cut(s) 359
HpaII CCGG 1 cut(s) 216
HphI GGTGA 1 cut(s) 432
Hpy166II GTNNAC 1 cut(s) 453
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 2 cut(s) 202, 347
Hpy8I GTNNAC 1 cut(s) 453
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 3 cut(s) 85, 119, 392
HpyCH4IV ACGT 1 cut(s) 449
HpyCH4V TGCA 4 cut(s) 180, 308, 323, 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpyF3I CTNAG 2 cut(s) 123, 579
HpySE526I ACGT 1 cut(s) 449
Hsp92II CATG 3 cut(s) 149, 339, 350
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 3 cut(s) 73, 171, 624
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 2 cut(s) 47, 318
LpnPI CCDG 4 cut(s) 141, 154, 229, 625
Lsp1109I GCAGC 3 cut(s) 24, 66, 328
MaeII ACGT 1 cut(s) 449
MaeIII GTNAC 1 cut(s) 166
MalI GATC 3 cut(s) 75, 173, 626
MboI GATC 3 cut(s) 73, 171, 624
MboII GAAGA 4 cut(s) 16, 16, 139, 190
MflI RGATCY 1 cut(s) 624
MhlI GDGCHC 2 cut(s) 225, 455
MluCI AATT 3 cut(s) 414, 554, 630
MroNI GCCGGC 1 cut(s) 215
MseI TTAA 2 cut(s) 135, 480
MslI CAYNNNNRTG 2 cut(s) 368, 448
MspI CCGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 60
NaeI GCCGGC 1 cut(s) 217
NdeII GATC 3 cut(s) 73, 171, 624
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 3 cut(s) 149, 339, 350
NlaIV GGNNCC 1 cut(s) 214
OliI CACNNNNGTG 1 cut(s) 368
PagI TCATGA 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 122
PdiI GCCGGC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 4 cut(s) 39, 56, 194, 343
Ple19I CGATCG 1 cut(s) 174
Ppu21I YACGTR 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 2 cut(s) 213, 501
PsuI RGATCY 1 cut(s) 624
PvuI CGATCG 1 cut(s) 174
RsaI GTAC 2 cut(s) 112, 424
RsaNI GTAC 2 cut(s) 111, 423
RseI CAYNNNNRTG 2 cut(s) 368, 448
SacI GAGCTC 1 cut(s) 225
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 2 cut(s) 135, 480
SatI GCNGC 4 cut(s) 38, 55, 193, 342
Sau3AI GATC 3 cut(s) 73, 171, 624
Sau96I GGNCC 2 cut(s) 213, 501
SduI GDGCHC 2 cut(s) 225, 455
SetI ASST 8 cut(s) 59, 93, 160, 225, 315, 410, 452, 580
SinI GGWCC 1 cut(s) 501
SmiMI CAYNNNNRTG 2 cut(s) 368, 448
Sse9I AATT 3 cut(s) 414, 554, 630
SsiI CCGC 1 cut(s) 192
SspI AATATT 1 cut(s) 534
SstI GAGCTC 1 cut(s) 225
TaaI ACNGT 3 cut(s) 85, 119, 392
TaiI ACGT 1 cut(s) 452
TaqI TCGA 2 cut(s) 174, 201
TasI AATT 3 cut(s) 414, 554, 630
TatI WGTACW 1 cut(s) 110
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 2 cut(s) 135, 480
Tru9I TTAA 2 cut(s) 135, 480
TscAI CASTG 2 cut(s) 252, 397
TseI GCWGC 3 cut(s) 37, 54, 341
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 252, 397
VneI GTGCAC 1 cut(s) 451
VpaK11BI GGWCC 1 cut(s) 501
XapI RAATTY 1 cut(s) 554
XcmI CCANNNNNNNNNTGG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.