AT4G38770

Proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010868
Physical Location & Seq
Reverse (-)
18096606 .. 18098633
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38770.1

Sequence Viewer

Length: 1347 bp
ATGAGGATCTTACCCGAACCTCGAGGTTCGGTTCCGTGTCTTCTCCTTCTTGTGTCGGTTCTCTTATCAGCGACTCTCTCACTCGCTCGTGTCGTCGAAGTTGTCGGTTACGCCGAGAGCAAGATCAAAACCCCCCATGCATTTTCAGGACTTCGAGTGACGATCGACTGTAAGGTGAATAAAGGCCATTTTGTTACAAAAGGTTCGGGAAACATTGACGACAAAGGAAAGTTTGGTCTTAATATTCCTCATGACATTGTCTCCGACAACGGAGCGTTAAAGGAGGAGTGTTACGCTCAGCTTCACAGCGCGGCGGGAACACCTTGTCCGGCTCACGACGGCCTTGAGTCCACCAAGATCGTGTTTTTATCCAAATCCGGGGATAAACACATTTTGGGTCTCAAACAAAATCTGAAATTTTCACCGGAGATTTGCGTTTCCAAATTCTTCTGGCCTATGCCTAAGTTGCCTCCTTTTAAGGGCTTTGATCATCCTTTCCCTTTACCTCCACCTTTGGAACTTCCACCGTTTCTCAAGAAGCCATGTCCACCTAAATACAGTCCTCCTGTGGAGGTTCCACCCCCGGTACCAGTTTACGAGCCGCCGCCAAAGAAAGAGATTCCCCCGCCGGTTCCGGTTTACGATCCACCGCCTAAGAAAGAGGTTCCACCACCTGTCCCAGTTTACAAGCCACCACCAAAGGTGGAGCTTCCACCGCCTATTCCTAAGAAGCCTTGTCCACCTAAACCGCCGAAGATAGAGCACCCACCTCCGGTTCCGGTTTACAAGCCACCGCCAAAGATAGAGAAGCCACCTCCGGTTCCGGTTTACAAGCCCCCGCCAAAGATAGAGCACCCACCTCCCGTTCCGGTACACAAGCTACCGAAGAAGCCATGTCCGCCTAAGAAAGTTGATCCACCGCCGGTGCCAGTCCACAAACCACCAACGAAGAAGCCTTGTCCGCCTAAGAAAGTTGATCCACCGCCGGTTCCAGTCCACAAGCCGCCGCCAAAGATAGTCATTCCACCGCCGAAGATAGAGCACCCACCTCCAGTTCCGGTTTACAAGCCGCCGCCGAAGATAGAGCATCCACCAATCTACATACCACCAATTGTGAAGAAGCCGTGTCCTCCGCCGGTACCAATATACAAACCACCGGTTGTGATCCCCAAGAAGCCATGCCCTCCGCCGGTACCAGTATACAAACCACCGGTAGTGGTGATTCCAAAGAAGCCATGTCCGCCACTTCCACAGCTCCCACCACTTCCAAAGTTTCCACCTCTTCCTCCTAAATACATTCACCACCCCAAGTTCGGGAAATGGCCTCCGTTGCCTCCACACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0030312 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

448

Amino Acids

49.14

Weight (kDa)

9.71

Isoelectric Point (pI)

68.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 40 - 111 3.9e-07 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010868)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21140 AT4G38770
fragaria_vesca FvH4_2g01970
malus_domestica MD05G1116400.v1.1 MD10G1118600.v1.1
prunus_persica Prupe.8G160900_v2.0.a1
pyrus_communis pycom05g11060 pycom10g10270
rosa_chinensis RchiOBHm_Chr6g0245161
rosa_laevigata RLG00000015320
rosa_multiflora Rmu_sc0001288.1_g000002 Rmu_sc0015012.1_g000001 Rmu_ssc0000087.1_g000001
rosa_roxburghii Rroxscaffold_7G00215400
rosa_rugosa Rorug05G0512400
rosa_samantha Rh6AG027500 Rh6BG023600 Rh6CG022000 Rh6DG022100
rosa_wichuraiana Rw6G002320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 21
Acc65I GGTACC 3 cut(s) 586, 1138, 1192
AccB1I GGYRCC 4 cut(s) 586, 925, 1138, 1192
AccI GTMKAC 1 cut(s) 1200
AccII CGCG 1 cut(s) 311
AclWI GGATC 5 cut(s) 14, 638, 908, 971, 1159
AcsI RAATTY 2 cut(s) 416, 443
AfaI GTAC 4 cut(s) 588, 873, 1140, 1194
AfiI CCNNNNNNNGG 6 cut(s) 378, 479, 772, 1189, 1313, 1314
AgeI ACCGGT 2 cut(s) 1156, 1210
AloI GAACNNNNNNTCC 2 cut(s) 310, 342
AluBI AGCT 4 cut(s) 301, 709, 880, 1255
AluI AGCT 4 cut(s) 301, 709, 880, 1255
Alw21I GWGCWC 3 cut(s) 765, 855, 1044
Alw26I GTCTC 2 cut(s) 265, 404
AlwI GGATC 5 cut(s) 14, 638, 908, 971, 1159
Ama87I CYCGRG 1 cut(s) 21
AoxI GGCC 4 cut(s) 184, 340, 452, 1322
ApoI RAATTY 2 cut(s) 416, 443
AsiGI ACCGGT 2 cut(s) 1156, 1210
Asp718I GGTACC 3 cut(s) 586, 1138, 1192
AspLEI GCGC 1 cut(s) 311
AsuC2I CCSGG 2 cut(s) 379, 584
AsuHPI GGTGA 4 cut(s) 187, 414, 1231, 1292
AvaI CYCGRG 1 cut(s) 21
BanI GGYRCC 4 cut(s) 586, 925, 1138, 1192
BauI CACGAG 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 32
Bbv12I GWGCWC 3 cut(s) 765, 855, 1044
BceAI ACGGC 2 cut(s) 355, 1108
BclI TGATCA 1 cut(s) 487
BcnI CCSGG 2 cut(s) 379, 584
BcoDI GTCTC 2 cut(s) 265, 404
BisI GCNGC 7 cut(s) 312, 602, 605, 1004, 1007, 1070, 1073
BlpI GCTNAGC 1 cut(s) 297
BlsI GCNGC 7 cut(s) 313, 603, 606, 1005, 1008, 1071, 1074
Bme1390I CCNGG 2 cut(s) 379, 584
BmeT110I CYCGRG 1 cut(s) 21
BmrFI CCNGG 2 cut(s) 379, 584
BmrI ACTGGG 1 cut(s) 674
BmsI GCATC 1 cut(s) 1096
BmuI ACTGGG 1 cut(s) 674
BpiI GAAGAC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 1035
Bpu1102I GCTNAGC 1 cut(s) 297
BpuEI CTTGAG 2 cut(s) 365, 518
BpuMI CCSGG 2 cut(s) 379, 584
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 378, 582
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 6 cut(s) 378, 479, 772, 1189, 1313, 1314
Bse118I RCCGGY 7 cut(s) 628, 922, 985, 1135, 1156, 1189, 1210
Bse1I ACTGG 6 cut(s) 590, 680, 929, 992, 1052, 1196
BseDI CCNNGG 2 cut(s) 378, 582
BseGI GGATG 2 cut(s) 490, 1087
BseLI CCNNNNNNNGG 6 cut(s) 378, 479, 772, 1189, 1313, 1314
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 6 cut(s) 590, 680, 929, 992, 1052, 1196
BseRI GAGGAG 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 311
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 4 cut(s) 186, 342, 454, 1324
BshNI GGYRCC 4 cut(s) 586, 925, 1138, 1192
BshTI ACCGGT 2 cut(s) 1156, 1210
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 3 cut(s) 765, 855, 1044
BsiHKCI CYCGRG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 6 cut(s) 378, 479, 772, 1189, 1313, 1314
BsmAI GTCTC 2 cut(s) 265, 404
BsmFI GGGAC 1 cut(s) 662
BsnI GGCC 4 cut(s) 186, 342, 454, 1324
Bso31I GGTCTC 1 cut(s) 404
BsoBI CYCGRG 1 cut(s) 21
Bsp1286I GDGCHC 3 cut(s) 765, 855, 1044
Bsp143I GATC 9 cut(s) 6, 123, 162, 357, 487, 643, 913, 976, 1164
Bsp1720I GCTNAGC 1 cut(s) 297
BspANI GGCC 4 cut(s) 186, 342, 454, 1324
BspCNI CTCAG 1 cut(s) 310
BspFNI CGCG 1 cut(s) 311
BspHI TCATGA 1 cut(s) 250
BspPI GGATC 5 cut(s) 14, 638, 908, 971, 1159
BspT107I GGYRCC 4 cut(s) 586, 925, 1138, 1192
BspTNI GGTCTC 1 cut(s) 404
BsrFI RCCGGY 7 cut(s) 628, 922, 985, 1135, 1156, 1189, 1210
BsrI ACTGG 6 cut(s) 590, 680, 929, 992, 1052, 1196
BssAI RCCGGY 7 cut(s) 628, 922, 985, 1135, 1156, 1189, 1210
BssECI CCNNGG 2 cut(s) 378, 582
BssMI GATC 9 cut(s) 6, 123, 162, 357, 487, 643, 913, 976, 1164
BssNAI GTATAC 1 cut(s) 1201
BssSI CACGAG 1 cut(s) 87
Bst1107I GTATAC 1 cut(s) 1201
Bst2BI CACGAG 1 cut(s) 87
Bst4CI ACNGT 3 cut(s) 170, 528, 560
Bst6I CTCTTC 1 cut(s) 1287
BstDEI CTNAG 6 cut(s) 297, 462, 654, 726, 903, 966
BstF5I GGATG 2 cut(s) 490, 1087
BstFNI CGCG 1 cut(s) 311
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 9 cut(s) 9, 126, 165, 360, 490, 646, 916, 979, 1167
BstMAI GTCTC 2 cut(s) 265, 404
BstMBI GATC 9 cut(s) 6, 123, 162, 357, 487, 643, 913, 976, 1164
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 6 cut(s) 466, 715, 898, 961, 1240, 1330
BstSCI CCNGG 2 cut(s) 377, 582
BstUI CGCG 1 cut(s) 311
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BstZ17I GTATAC 1 cut(s) 1201
BsuRI GGCC 4 cut(s) 186, 342, 454, 1324
BtsCI GGATG 2 cut(s) 490, 1087
CciI TCATGA 1 cut(s) 250
CfoI GCGC 1 cut(s) 311
Cfr10I RCCGGY 7 cut(s) 628, 922, 985, 1135, 1156, 1189, 1210
Csp6I GTAC 4 cut(s) 587, 872, 1139, 1193
CspAI ACCGGT 2 cut(s) 1156, 1210
CviAII CATG 6 cut(s) 137, 251, 543, 894, 1179, 1236
CviQI GTAC 4 cut(s) 587, 872, 1139, 1193
DdeI CTNAG 6 cut(s) 297, 462, 654, 726, 903, 966
DpnI GATC 9 cut(s) 8, 125, 164, 359, 489, 645, 915, 978, 1166
DpnII GATC 9 cut(s) 6, 123, 162, 357, 487, 643, 913, 976, 1164
Eam1104I CTCTTC 1 cut(s) 1287
EarI CTCTTC 1 cut(s) 1287
EciI GGCGGA 5 cut(s) 888, 951, 1122, 1176, 1230
Eco31I GGTCTC 1 cut(s) 404
Eco88I CYCGRG 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 142
FaeI CATG 6 cut(s) 140, 254, 546, 897, 1182, 1239
FaqI GGGAC 1 cut(s) 662
FatI CATG 6 cut(s) 136, 250, 542, 893, 1178, 1235
FauI CCCGC 3 cut(s) 307, 633, 846
FbaI TGATCA 1 cut(s) 487
FblI GTMKAC 1 cut(s) 1200
Fnu4HI GCNGC 7 cut(s) 312, 602, 605, 1004, 1007, 1070, 1073
FokI GGATG 2 cut(s) 477, 1074
Fsp4HI GCNGC 7 cut(s) 312, 602, 605, 1004, 1007, 1070, 1073
GlaI GCGC 1 cut(s) 310
GluI GCNGC 7 cut(s) 312, 602, 605, 1004, 1007, 1070, 1073
GsuI CTGGAG 1 cut(s) 1035
HaeIII GGCC 4 cut(s) 186, 342, 454, 1324
HhaI GCGC 1 cut(s) 311
Hin1II CATG 6 cut(s) 140, 254, 546, 897, 1182, 1239
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HinfI GANTC 4 cut(s) 73, 347, 619, 1222
HphI GGTGA 4 cut(s) 187, 414, 1231, 1292
Hpy188I TCNGA 2 cut(s) 265, 414
Hpy188III TCNNGA 6 cut(s) 147, 207, 251, 335, 535, 1315
Hpy99I CGWCG 2 cut(s) 98, 341
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 3 cut(s) 170, 528, 560
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 6 cut(s) 466, 715, 898, 961, 1240, 1330
HpyF3I CTNAG 6 cut(s) 297, 462, 654, 726, 903, 966
Hsp92II CATG 6 cut(s) 140, 254, 546, 897, 1182, 1239
HspAI GCGC 1 cut(s) 309
KpnI GGTACC 3 cut(s) 590, 1142, 1196
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 9 cut(s) 6, 123, 162, 357, 487, 643, 913, 976, 1164
LmnI GCTCC 3 cut(s) 272, 706, 1260
LweI GCATC 1 cut(s) 1096
MaeIII GTNAC 4 cut(s) 107, 157, 193, 290
MalI GATC 9 cut(s) 8, 125, 164, 359, 489, 645, 915, 978, 1166
MboI GATC 9 cut(s) 6, 123, 162, 357, 487, 643, 913, 976, 1164
MboII GAAGA 9 cut(s) 32, 439, 766, 898, 961, 1045, 1090, 1129, 1274
MfeI CAATTG 1 cut(s) 1110
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 3 cut(s) 765, 855, 1044
MluCI AATT 3 cut(s) 416, 443, 1110
MlyI GAGTC 2 cut(s) 67, 356
MmeI TCCRAC 1 cut(s) 288
Mph1103I ATGCAT 1 cut(s) 142
MseI TTAA 3 cut(s) 240, 278, 477
MspR9I CCNGG 2 cut(s) 379, 584
MunI CAATTG 1 cut(s) 1110
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 6 cut(s) 466, 715, 898, 961, 1240, 1330
NciI CCSGG 2 cut(s) 379, 584
NdeII GATC 9 cut(s) 6, 123, 162, 357, 487, 643, 913, 976, 1164
NlaIII CATG 6 cut(s) 140, 254, 546, 897, 1182, 1239
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 142
PaeR7I CTCGAG 1 cut(s) 21
PagI TCATGA 1 cut(s) 250
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 111
PfeI GAWTC 2 cut(s) 619, 1222
PflFI GACNNNGTC 1 cut(s) 257
PinAI ACCGGT 2 cut(s) 1156, 1210
PkrI GCNGC 7 cut(s) 313, 603, 606, 1005, 1008, 1071, 1074
Ple19I CGATCG 1 cut(s) 165
PleI GAGTC 2 cut(s) 67, 355
PpsI GAGTC 2 cut(s) 67, 355
PspXI VCTCGAGB 1 cut(s) 21
PsuI RGATCY 1 cut(s) 6
PsyI GACNNNGTC 1 cut(s) 257
PvuI CGATCG 1 cut(s) 165
RsaI GTAC 4 cut(s) 588, 873, 1140, 1194
RsaNI GTAC 4 cut(s) 587, 872, 1139, 1193
SaqAI TTAA 3 cut(s) 240, 278, 477
SatI GCNGC 7 cut(s) 312, 602, 605, 1004, 1007, 1070, 1073
Sau3AI GATC 9 cut(s) 6, 123, 162, 357, 487, 643, 913, 976, 1164
SchI GAGTC 2 cut(s) 67, 356
ScrFI CCNGG 2 cut(s) 379, 584
SduI GDGCHC 3 cut(s) 765, 855, 1044
SfaNI GCATC 1 cut(s) 1096
Sfr274I CTCGAG 1 cut(s) 21
SgrAI CRCCGGYG 1 cut(s) 922
SlaI CTCGAG 1 cut(s) 21
SmlI CTYRAG 3 cut(s) 21, 344, 533
SmoI CTYRAG 3 cut(s) 21, 344, 533
Sse9I AATT 3 cut(s) 416, 443, 1110
SspI AATATT 1 cut(s) 244
StyD4I CCNGG 2 cut(s) 377, 582
TaaI ACNGT 3 cut(s) 170, 528, 560
TaqI TCGA 4 cut(s) 22, 96, 154, 165
TasI AATT 3 cut(s) 416, 443, 1110
TauI GCSGC 7 cut(s) 314, 604, 607, 1006, 1009, 1072, 1075
TfiI GAWTC 2 cut(s) 619, 1222
Tru1I TTAA 3 cut(s) 240, 278, 477
Tru9I TTAA 3 cut(s) 240, 278, 477
TseFI GTSAC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 157
TspGWI ACGGA 3 cut(s) 24, 285, 1317
Tth111I GACNNNGTC 1 cut(s) 257
XapI RAATTY 2 cut(s) 416, 443
XhoI CTCGAG 1 cut(s) 21
XmiI GTMKAC 1 cut(s) 1200
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.