MD10G1118600.v1.1

Proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0010868
Physical Location & Seq
Forward (+)
19588844 .. 19591422
2579 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1118600.v1.1.491

Sequence Viewer

Length: 1188 bp
ATGAAGATCTTCCAGAAGTGCTTCTGGCTTTGTGTGCTTTTTGTGAGCTTTTGCTACGCTGAACAGACAGTTGAGGTACTTGGTGTTGGAGAATGTACTGACTGTGATCAGAATAGCATTAAGACTAGCCGTGCCTTTTCAGGTCTTCGTGTAACAATTGATTGCAAGCCAGAAAATGGACACTTCAAGACAAGAAGAGTTGGGGAGCTCAATGAACATGGAGAGTTCAAAGTCTCACTCCCTAAAGAGATTCTAAAAGAAGAAAACCAACTAAAAGAGGACTGTTATGCCCAACTCCACAGTGCATCAGCTGTCCCTTGTGCTGCCCATGACGGCCTAAAATCCACAAAAATAGTCTTCAAGTCTAAGGCAAGTGATGGGACACAAACCTTTGGAGTGGTTGGTGGAAAGCTCAAATTTTCACCTGTGACGTGCACTTCCGCCTTCTTTTGGCCTCACAAGAAGCACCCACTTTTTTCCAAATTGCCACATTTGCCTAAGTTGCCAACTTTCCCTAAATCTCACCCAATTTTGGGACACCCATTCCCATTCCCTCCTAAGGTTTTTCCTCCATTCCCACCTAAGGTCTTCCCTCCAAAAGTACCAATCTTCAAGAAGCCTCTTCCTCCACCAGTGCCAATCTACAAGAAACCTCTCCCTCCCCACATCCCAGTGTACAAGAAGCCTCTTCCACCACCAATCCCAGTATACAAGAAGCCTCTTCCACCACCAGTCCCAATATACAAGAAGCCTCTTCCACCACCAATCCCAGTATACAAGAAGCCTCTTCCACCACCAGTCCCAGTATACAAGAAGCCACTTCCACCACCAGTCCCAATATACAAAAAGCCACTTCCCCCACTAGTCCCAGTATACAAAAAGCCTCTTCCCCCACCAATTCCCATATACACAAAGCCATTTCCACCACCAGTCCCATTCTTTAAGCCAAAGCCAAAGCCACATCCATTCTTTAAGCCAAAGCCAAAGCCACATCCATTCTTTAAGCCTCACCCTCCACTGCCAAAGATTCCTCATCCATTCTTTAAGCCTCTCCCTCCATTGCCAAAGATTCCTCACCCATTCTTTAAGAAGCCACCAATCCCACCACTCCACCCAAAATATTACTTCCCCCACCCAAAGGATGGCAAGTTCCCACCCATGCCACCTTTGGTTCCTCAATATCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

396

Amino Acids

44.7

Weight (kDa)

9.96

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 27 - 110 8.2e-12 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010868)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21140 AT4G38770
fragaria_vesca FvH4_2g01970
malus_domestica MD05G1116400.v1.1 MD10G1118600.v1.1
prunus_persica Prupe.8G160900_v2.0.a1
pyrus_communis pycom05g11060 pycom10g10270
rosa_chinensis RchiOBHm_Chr6g0245161
rosa_laevigata RLG00000015320
rosa_multiflora Rmu_sc0001288.1_g000002 Rmu_sc0015012.1_g000001 Rmu_ssc0000087.1_g000001
rosa_roxburghii Rroxscaffold_7G00215400
rosa_rugosa Rorug05G0512400
rosa_samantha Rh6AG027500 Rh6BG023600 Rh6CG022000 Rh6DG022100
rosa_wichuraiana Rw6G002320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 176, 1142
AccI GTMKAC 4 cut(s) 708, 774, 807, 873
AciI CCGC 1 cut(s) 441
AcsI RAATTY 1 cut(s) 416
AfaI GTAC 4 cut(s) 78, 97, 603, 677
AfiI CCNNNNNNNGG 8 cut(s) 176, 450, 532, 533, 559, 583, 1138, 1142
AgsI TTSAA 4 cut(s) 187, 229, 361, 613
AhlI ACTAGT 1 cut(s) 862
AjiI CACGTC 1 cut(s) 432
AloI GAACNNNNNNTCC 2 cut(s) 1133, 1165
AluBI AGCT 4 cut(s) 48, 208, 311, 412
AluI AGCT 4 cut(s) 48, 208, 311, 412
Alw21I GWGCWC 2 cut(s) 210, 437
Alw26I GTCTC 1 cut(s) 238
Alw44I GTGCAC 1 cut(s) 433
AoxI GGCC 2 cut(s) 334, 452
ApaLI GTGCAC 1 cut(s) 433
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 1 cut(s) 416
Asp700I GAANNNNTTC 2 cut(s) 8, 20
AsuHPI GGTGA 4 cut(s) 414, 515, 1001, 1067
AxyI CCTNAGG 2 cut(s) 558, 582
BaeGI GKGCMC 1 cut(s) 437
BanII GRGCYC 1 cut(s) 210
BbsI GAAGAC 3 cut(s) 137, 349, 580
Bbv12I GWGCWC 2 cut(s) 210, 437
BbvI GCAGC 1 cut(s) 310
BccI CCATC 2 cut(s) 371, 1136
BceAI ACGGC 2 cut(s) 114, 349
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 238
BcuI ACTAGT 1 cut(s) 862
BfaI CTAG 2 cut(s) 126, 863
BglII AGATCT 1 cut(s) 6
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
BmgBI CACGTC 1 cut(s) 432
BmiI GGNNCC 1 cut(s) 1173
BmrI ACTGGG 5 cut(s) 665, 698, 764, 797, 863
BmsI GCATC 1 cut(s) 314
BmuI ACTGGG 5 cut(s) 665, 698, 764, 797, 863
BpiI GAAGAC 3 cut(s) 137, 349, 580
Bsc4I CCNNNNNNNGG 8 cut(s) 176, 450, 532, 533, 559, 583, 1138, 1142
Bse21I CCTNAGG 2 cut(s) 558, 582
Bse3DI GCAATG 1 cut(s) 1058
BseGI GGATG 5 cut(s) 666, 961, 991, 1033, 1147
BseLI CCNNNNNNNGG 8 cut(s) 176, 450, 532, 533, 559, 583, 1138, 1142
BseMI GCAATG 1 cut(s) 1058
BseSI GKGCMC 1 cut(s) 437
BseXI GCAGC 1 cut(s) 310
BshFI GGCC 2 cut(s) 336, 454
BsiHKAI GWGCWC 2 cut(s) 210, 437
BslFI GGGAC 8 cut(s) 299, 394, 549, 719, 785, 818, 851, 917
BslI CCNNNNNNNGG 8 cut(s) 176, 450, 532, 533, 559, 583, 1138, 1142
BsmAI GTCTC 1 cut(s) 238
BsmFI GGGAC 8 cut(s) 299, 394, 549, 719, 785, 818, 851, 917
BsnI GGCC 2 cut(s) 336, 454
Bsp1286I GDGCHC 2 cut(s) 210, 437
Bsp1407I TGTACA 1 cut(s) 675
Bsp143I GATC 2 cut(s) 6, 106
BspACI CCGC 1 cut(s) 441
BspANI GGCC 2 cut(s) 336, 454
BspLI GGNNCC 1 cut(s) 1173
BsrDI GCAATG 1 cut(s) 1058
BsrGI TGTACA 1 cut(s) 675
BssMI GATC 2 cut(s) 6, 106
BssNAI GTATAC 4 cut(s) 709, 775, 808, 874
Bst1107I GTATAC 4 cut(s) 709, 775, 808, 874
Bst4CI ACNGT 4 cut(s) 70, 104, 284, 302
Bst6I CTCTTC 7 cut(s) 190, 627, 693, 726, 759, 792, 891
BstAUI TGTACA 1 cut(s) 675
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 5 cut(s) 366, 498, 558, 582, 1185
BstF5I GGATG 5 cut(s) 666, 961, 991, 1033, 1147
BstKTI GATC 2 cut(s) 9, 109
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 2 cut(s) 6, 106
BstMWI GCNNNNNNNGC 3 cut(s) 34, 493, 502
BstSLI GKGCMC 1 cut(s) 437
BstV1I GCAGC 1 cut(s) 310
BstV2I GAAGAC 3 cut(s) 137, 349, 580
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BstZ17I GTATAC 4 cut(s) 709, 775, 808, 874
Bsu36I CCTNAGG 2 cut(s) 558, 582
BsuRI GGCC 2 cut(s) 336, 454
BtrI CACGTC 1 cut(s) 432
BtsCI GGATG 5 cut(s) 666, 961, 991, 1033, 1147
BtsI GCAGTG 1 cut(s) 1016
BtsIMutI CAGTG 4 cut(s) 307, 639, 678, 1016
Cac8I GCNNGC 1 cut(s) 167
Csp6I GTAC 4 cut(s) 77, 96, 602, 676
CviAII CATG 3 cut(s) 218, 329, 1159
CviQI GTAC 4 cut(s) 77, 96, 602, 676
DdeI CTNAG 5 cut(s) 366, 498, 558, 582, 1185
DpnI GATC 2 cut(s) 8, 108
DpnII GATC 2 cut(s) 6, 106
Eam1104I CTCTTC 7 cut(s) 190, 627, 693, 726, 759, 792, 891
EarI CTCTTC 7 cut(s) 190, 627, 693, 726, 759, 792, 891
EciI GGCGGA 1 cut(s) 430
Ecl136II GAGCTC 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 208
Eco81I CCTNAGG 2 cut(s) 558, 582
EcoICRI GAGCTC 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 210
FaeI CATG 3 cut(s) 221, 332, 1162
FaqI GGGAC 8 cut(s) 299, 394, 549, 719, 785, 818, 851, 917
FatI CATG 3 cut(s) 217, 328, 1158
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 4 cut(s) 708, 774, 807, 873
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 5 cut(s) 653, 948, 978, 1020, 1154
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 2 cut(s) 126, 863
GluI GCNGC 1 cut(s) 324
HaeIII GGCC 2 cut(s) 336, 454
Hin1II CATG 3 cut(s) 221, 332, 1162
HinfI GANTC 3 cut(s) 250, 1027, 1069
HphI GGTGA 4 cut(s) 414, 515, 1001, 1067
Hpy166II GTNNAC 6 cut(s) 435, 676, 709, 775, 808, 874
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 3 cut(s) 13, 187, 613
Hpy8I GTNNAC 6 cut(s) 435, 676, 709, 775, 808, 874
HpyAV CCTTC 1 cut(s) 454
HpyCH4III ACNGT 4 cut(s) 70, 104, 284, 302
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 3 cut(s) 165, 305, 435
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 493, 502
HpyF3I CTNAG 5 cut(s) 366, 498, 558, 582, 1185
HpySE526I ACGT 1 cut(s) 431
Hsp92II CATG 3 cut(s) 221, 332, 1162
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 2 cut(s) 6, 106
LmnI GCTCC 1 cut(s) 205
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 314
MaeI CTAG 2 cut(s) 126, 863
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 2 cut(s) 151, 427
MalI GATC 2 cut(s) 8, 108
MboI GATC 2 cut(s) 6, 106
MfeI CAATTG 1 cut(s) 156
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 2 cut(s) 210, 437
MluCI AATT 5 cut(s) 156, 416, 482, 528, 897
MmeI TCCRAC 1 cut(s) 67
MroXI GAANNNNTTC 2 cut(s) 8, 20
MseI TTAA 6 cut(s) 120, 942, 972, 1002, 1044, 1086
MslI CAYNNNNRTG 1 cut(s) 671
MspA1I CMGCKG 1 cut(s) 311
MunI CAATTG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 34, 493, 502
NdeII GATC 2 cut(s) 6, 106
NlaIII CATG 3 cut(s) 221, 332, 1162
NlaIV GGNNCC 1 cut(s) 1173
NmuCI GTSAC 1 cut(s) 427
PdmI GAANNNNTTC 2 cut(s) 8, 20
PfeI GAWTC 3 cut(s) 250, 1027, 1069
PflMI CCANNNNNTGG 2 cut(s) 176, 1142
PkrI GCNGC 1 cut(s) 325
Psp124BI GAGCTC 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 1173
PsuI RGATCY 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 4 cut(s) 78, 97, 603, 677
RsaNI GTAC 4 cut(s) 77, 96, 602, 676
RseI CAYNNNNRTG 1 cut(s) 671
SacI GAGCTC 1 cut(s) 210
SaqAI TTAA 6 cut(s) 120, 942, 972, 1002, 1044, 1086
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 2 cut(s) 6, 106
SduI GDGCHC 2 cut(s) 210, 437
SfaNI GCATC 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 671
SpeI ACTAGT 1 cut(s) 862
Sse9I AATT 5 cut(s) 156, 416, 482, 528, 897
SsiI CCGC 1 cut(s) 441
SspI AATATT 1 cut(s) 1121
SspMI CTAG 2 cut(s) 126, 863
SstI GAGCTC 1 cut(s) 210
TaaI ACNGT 4 cut(s) 70, 104, 284, 302
TaiI ACGT 1 cut(s) 434
TasI AATT 5 cut(s) 156, 416, 482, 528, 897
TatI WGTACW 2 cut(s) 95, 675
TfiI GAWTC 3 cut(s) 250, 1027, 1069
Tru1I TTAA 6 cut(s) 120, 942, 972, 1002, 1044, 1086
Tru9I TTAA 6 cut(s) 120, 942, 972, 1002, 1044, 1086
TscAI CASTG 4 cut(s) 307, 639, 678, 1023
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 17, 228
TspRI CASTG 4 cut(s) 307, 639, 678, 1023
Van91I CCANNNNNTGG 2 cut(s) 176, 1142
VneI GTGCAC 1 cut(s) 433
XapI RAATTY 1 cut(s) 416
XcmI CCANNNNNNNNNTGG 2 cut(s) 1139, 1165
XmiI GTMKAC 4 cut(s) 708, 774, 807, 873
XmnI GAANNNNTTC 2 cut(s) 8, 20
XspI CTAG 2 cut(s) 126, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.