AT2G22870

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010778
Physical Location & Seq
Forward (+)
9739408 .. 9741700
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G22870.1

Sequence Viewer

Length: 903 bp
ATGGTGCTACTTCTCCGATATCGATCCTTAACGATAAATCTCACTCCTCTAATACCCAAATCTCAAAAATTCCACACTCTCCAATCATTTCGTAACCCTAATTTCATCTCCATCCCAAAAATCTCAGCCTCCACGAACAATCCAACAACAACAACGAATCGGTCGATCTCCGACGCGACTAAATTCGCTAAGTCAGTGTTATTCATACCTCCTGGTGTAGAGATTGAGGAACTAACAGATGATATGGTTCTTCCGGGTTCAAATATCGTAATCGGACCTTTTGCGGGTCATTCACAAATCAAAGAAGTTGAATTTGTTAAAAGTAGTGCTCGTGCTAGAGATTGTCCTAAAGATGATCGTCCTGAGATTGCGATTTTGGGTCGTTCTAATGTTGGCAAGTCTTCGCTTATCAATTGTTTGGTTCGTAAGAAAGAAGTTGCTCTTACTTCTAAGAAACCTGGGAAGACTCAGCTTATAAATCACTTCTTGGTGAATAAGAGTTGGTACATTGTGGATTTGCCTGGTTATGGATTTGCTAAAGTTTCAGATGCTGCGAAAACAGATTGGTCTGCGTTTACTAAAGGTTACTTCTTGAATAGAGACAGTCTTGTTTGTGTTCTACTTCTCATCGATGCAAGTGTTCCTCCTCAGAAGATTGATCTTGATTGTGCTAATTGGCTTGGTCGCAACAATGTACCGATGACTTTCGTGTTTACGAAATGCGATAAAATGAAAGCAACGAAAGGGAAAAGACCTGATGAGAACATTAAAGCTTTCCAACAAATCATTAGAGAGAATTTTAAAGTACATCCTCCTTGGATTTTGACGAGTAGTGTATCTGGTTTAGGCAGAGACGAGCTTCTTCTTCACATGTCGCAGCTGAGAAACTACTGGGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

300

Amino Acids

33.69

Weight (kDa)

9.61

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 122 - 240 5.2e-19 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22870
fragaria_vesca FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030
malus_domestica MD17G1236700.v1.1
prunus_persica Prupe.6G218100_v2.0.a1
pyrus_communis pycom02g15310 pycom15g26220 pycom17g23980
rosa_chinensis RchiOBHm_Chr2g0108521
rosa_laevigata RLG00000017675
rosa_roxburghii Rroxscaffold_2G00135060
rosa_rugosa Rorug02G0154000
rosa_samantha Rh2AG202900 Rh2BG215900 Rh2CG206900 Rh2DG210100
rosa_wichuraiana Rw2G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 476
AccII CGCG 1 cut(s) 176
AciI CCGC 1 cut(s) 284
AclWI GGATC 1 cut(s) 18
AcsI RAATTY 4 cut(s) 68, 182, 311, 796
AfaI GTAC 3 cut(s) 506, 696, 807
AfiI CCNNNNNNNGG 2 cut(s) 284, 527
AflIII ACRYGT 1 cut(s) 870
AgsI TTSAA 3 cut(s) 261, 311, 595
AjnI CCWGG 3 cut(s) 211, 457, 520
AluBI AGCT 4 cut(s) 472, 773, 859, 880
AluI AGCT 4 cut(s) 472, 773, 859, 880
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 2 cut(s) 594, 846
AlwI GGATC 1 cut(s) 18
AlwNI CAGNNNCTG 1 cut(s) 551
ApeKI GCWGC 2 cut(s) 551, 877
ApoI RAATTY 4 cut(s) 68, 182, 311, 796
AspS9I GGNCC 1 cut(s) 275
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 1 cut(s) 502
AvaII GGWCC 1 cut(s) 275
BauI CACGAG 1 cut(s) 330
BbsI GAAGAC 2 cut(s) 393, 470
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 2 cut(s) 538, 889
BccI CCATC 1 cut(s) 119
BciT130I CCWGG 3 cut(s) 213, 459, 522
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 594, 846
BfaI CTAG 1 cut(s) 336
BisI GCNGC 2 cut(s) 552, 878
BlsI GCNGC 2 cut(s) 553, 879
Bme1390I CCNGG 4 cut(s) 213, 255, 459, 522
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmrFI CCNGG 4 cut(s) 213, 255, 459, 522
BmrI ACTGGG 1 cut(s) 901
BmsI GCATC 2 cut(s) 538, 622
BmuI ACTGGG 1 cut(s) 901
BpiI GAAGAC 2 cut(s) 393, 470
BpuMI CCSGG 1 cut(s) 255
Bsa29I ATCGAT 2 cut(s) 22, 630
BsaBI GATNNNNATC 1 cut(s) 22
BsaJI CCNNGG 2 cut(s) 458, 815
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 527
Bse1I ACTGG 1 cut(s) 896
Bse8I GATNNNNATC 1 cut(s) 22
BseBI CCWGG 3 cut(s) 213, 459, 522
BseCI ATCGAT 2 cut(s) 22, 630
BseDI CCNNGG 2 cut(s) 458, 815
BseGI GGATG 2 cut(s) 111, 808
BseJI GATNNNNATC 1 cut(s) 22
BseLI CCNNNNNNNGG 2 cut(s) 284, 527
BseMII CTCAG 5 cut(s) 138, 354, 482, 662, 872
BseNI ACTGG 1 cut(s) 896
BseRI GAGGAG 2 cut(s) 36, 636
BseXI GCAGC 2 cut(s) 538, 889
Bsh1236I CGCG 1 cut(s) 176
Bsh1285I CGRYCG 1 cut(s) 164
BshVI ATCGAT 2 cut(s) 22, 630
BsiEI CGRYCG 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 331
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 284, 527
BsmAI GTCTC 2 cut(s) 594, 846
BsmBI CGTCTC 1 cut(s) 846
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 5 cut(s) 23, 165, 355, 658, 895
BspACI CCGC 1 cut(s) 284
BspCNI CTCAG 5 cut(s) 137, 355, 481, 661, 873
BspDI ATCGAT 2 cut(s) 22, 630
BspFNI CGCG 1 cut(s) 176
BspPI GGATC 1 cut(s) 18
BsrI ACTGG 1 cut(s) 896
BssECI CCNNGG 2 cut(s) 458, 815
BssMI GATC 5 cut(s) 23, 165, 355, 658, 895
BssSI CACGAG 1 cut(s) 330
BssT1I CCWWGG 1 cut(s) 815
Bst2BI CACGAG 1 cut(s) 330
Bst2UI CCWGG 3 cut(s) 213, 459, 522
Bst4CI ACNGT 1 cut(s) 605
BstDEI CTNAG 7 cut(s) 124, 189, 363, 450, 468, 648, 881
BstF5I GGATG 2 cut(s) 111, 808
BstFNI CGCG 1 cut(s) 176
BstKTI GATC 5 cut(s) 26, 168, 358, 661, 898
BstMAI GTCTC 2 cut(s) 594, 846
BstMBI GATC 5 cut(s) 23, 165, 355, 658, 895
BstMCI CGRYCG 1 cut(s) 164
BstNI CCWGG 3 cut(s) 213, 459, 522
BstNSI RCATGY 1 cut(s) 874
BstSCI CCNGG 4 cut(s) 211, 253, 457, 520
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 538, 889
BstV2I GAAGAC 2 cut(s) 393, 470
Bsu15I ATCGAT 2 cut(s) 22, 630
BsuTUI ATCGAT 2 cut(s) 22, 630
BtsCI GGATG 2 cut(s) 111, 808
BtsIMutI CAGTG 1 cut(s) 201
CaiI CAGNNNCTG 1 cut(s) 551
Cfr13I GGNCC 1 cut(s) 275
ClaI ATCGAT 2 cut(s) 22, 630
CseI GACGC 1 cut(s) 182
Csp6I GTAC 3 cut(s) 505, 695, 806
CviAII CATG 1 cut(s) 871
CviJI RGCY 6 cut(s) 128, 472, 679, 773, 859, 880
CviKI_1 RGCY 6 cut(s) 128, 472, 679, 773, 859, 880
CviQI GTAC 3 cut(s) 505, 695, 806
DdeI CTNAG 7 cut(s) 124, 189, 363, 450, 468, 648, 881
DpnI GATC 5 cut(s) 25, 167, 357, 660, 897
DpnII GATC 5 cut(s) 23, 165, 355, 658, 895
DraI TTTAAA 1 cut(s) 802
Eco130I CCWWGG 1 cut(s) 815
Eco32I GATATC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 275
EcoRII CCWGG 3 cut(s) 211, 457, 520
EcoRV GATATC 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 815
ErhI CCWWGG 1 cut(s) 815
Esp3I CGTCTC 1 cut(s) 846
FaeI CATG 1 cut(s) 874
FaiI YATR 5 cut(s) 206, 245, 476, 528, 872
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FatI CATG 1 cut(s) 870
FauI CCCGC 1 cut(s) 277
Fnu4HI GCNGC 2 cut(s) 552, 878
FokI GGATG 2 cut(s) 98, 795
Fsp4HI GCNGC 2 cut(s) 552, 878
FspBI CTAG 1 cut(s) 336
GluI GCNGC 2 cut(s) 552, 878
HapII CCGG 1 cut(s) 254
HgaI GACGC 1 cut(s) 182
Hin1II CATG 1 cut(s) 874
HindIII AAGCTT 1 cut(s) 771
HinfI GANTC 2 cut(s) 157, 466
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 502
Hpy166II GTNNAC 2 cut(s) 576, 714
Hpy188I TCNGA 5 cut(s) 17, 172, 275, 547, 651
Hpy188III TCNNGA 3 cut(s) 362, 592, 662
Hpy8I GTNNAC 2 cut(s) 576, 714
Hpy99I CGWCG 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 605
HpyCH4V TGCA 1 cut(s) 635
HpyF3I CTNAG 7 cut(s) 124, 189, 363, 450, 468, 648, 881
Hsp92II CATG 1 cut(s) 874
Kzo9I GATC 5 cut(s) 23, 165, 355, 658, 895
Lsp1109I GCAGC 2 cut(s) 538, 889
LweI GCATC 2 cut(s) 538, 622
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 92, 584
MalI GATC 5 cut(s) 25, 167, 357, 660, 897
MboI GATC 5 cut(s) 23, 165, 355, 658, 895
MboII GAAGA 6 cut(s) 242, 393, 475, 664, 854, 857
MfeI CAATTG 1 cut(s) 412
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 7 cut(s) 68, 100, 182, 311, 412, 673, 796
MlyI GAGTC 1 cut(s) 460
MmeI TCCRAC 3 cut(s) 167, 195, 802
MnlI CCTC 7 cut(s) 57, 139, 219, 220, 654, 657, 822
MseI TTAA 4 cut(s) 29, 318, 768, 801
MspA1I CMGCKG 1 cut(s) 880
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 4 cut(s) 213, 255, 459, 522
MunI CAATTG 1 cut(s) 412
MvaI CCWGG 3 cut(s) 213, 459, 522
MvnI CGCG 1 cut(s) 176
NciI CCSGG 1 cut(s) 255
NdeII GATC 5 cut(s) 23, 165, 355, 658, 895
NlaIII CATG 1 cut(s) 874
NspI RCATGY 1 cut(s) 874
PciI ACATGT 1 cut(s) 870
PcsI WCGNNNNNNNCGW 1 cut(s) 161
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 2 cut(s) 553, 879
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
PscI ACATGT 1 cut(s) 870
PsiI TTATAA 1 cut(s) 476
Psp6I CCWGG 3 cut(s) 211, 457, 520
PspGI CCWGG 3 cut(s) 211, 457, 520
PspPI GGNCC 1 cut(s) 275
PstNI CAGNNNCTG 1 cut(s) 551
PvuII CAGCTG 1 cut(s) 880
RsaI GTAC 3 cut(s) 506, 696, 807
RsaNI GTAC 3 cut(s) 505, 695, 806
SaqAI TTAA 4 cut(s) 29, 318, 768, 801
SatI GCNGC 2 cut(s) 552, 878
Sau3AI GATC 5 cut(s) 23, 165, 355, 658, 895
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 1 cut(s) 460
ScrFI CCNGG 4 cut(s) 213, 255, 459, 522
SduI GDGCHC 1 cut(s) 331
SetI ASST 9 cut(s) 211, 280, 460, 474, 586, 757, 775, 861, 882
SfaNI GCATC 2 cut(s) 538, 622
SinI GGWCC 1 cut(s) 275
Sse9I AATT 7 cut(s) 68, 100, 182, 311, 412, 673, 796
SsiI CCGC 1 cut(s) 284
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 4 cut(s) 211, 253, 457, 520
StyI CCWWGG 1 cut(s) 815
TaaI ACNGT 1 cut(s) 605
TaqI TCGA 3 cut(s) 22, 164, 630
TaqII GACCGA 1 cut(s) 150
TasI AATT 7 cut(s) 68, 100, 182, 311, 412, 673, 796
TatI WGTACW 1 cut(s) 805
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 4 cut(s) 29, 318, 768, 801
Tru9I TTAA 4 cut(s) 29, 318, 768, 801
TscAI CASTG 1 cut(s) 201
TseI GCWGC 2 cut(s) 551, 877
TspDTI ATGAA 3 cut(s) 94, 193, 746
TspRI CASTG 1 cut(s) 201
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 4 cut(s) 68, 182, 311, 796
XceI RCATGY 1 cut(s) 874
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.