Rh2AG202900

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0010778
Physical Location & Seq
Reverse (-)
20507755 .. 20512695
4941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG202900.1

Sequence Viewer

Length: 879 bp
ATGCTACTAGCAAACCGTCTGCTATTCACTTCCATACCATCTTCTTCTTCTTCTCCCTCTCTAAAACCCCAACCTCTCACCCTCACCTTCTCAAACCCAACCCATGCAAAACCCACCCGCCATGTCTCCTCAGCCTCGAAAACCACACCCATCTTGGAGAAGGACCGGTCCGTCCTGTTCGTCCCGCCTGGAGTCGACCCGGATGAGGTGACCCCGGACATGGTCCTACCCGGGTCCAACATCGTTATCGGACCCTACGCCGGCGACGCCAAGATTAAGGAGGTGGTGTTCGTCAAGAGCAGTAGTAGAGCTAAGGACTGCCCCAAACATGACCGGCCCGAATTCGCTATATTGGGCCGGTCCAATGTGGGCAAGTCCTCGCTTATCAATGCCTTGGTTAAGAAGAAGGATGTTGCTCTCACATCTAAGAAGCCAGGGAAGACTAAGTTGATCAATCATTTCTTGGTGAACAAAAGTTGGTACTTTGTGGATTTGCCTGGTTATGGGTTTGCTAAAGCTCCAGAAGCTGCTCGGATGGATTGGTCGGCATTCACTAAAGGTTTCTTCTTGAACAGAGATAATCTTGTTGCTGTTCTACTTCTTGTTGATGCTAGTGTTCCACCTCAGAGGATTGACCTAGACTGTGCGAATTGGCTTGGACGAAATAATATACCCATGACTTTTGTTTTCACAAAGTGTGACAAAATGAAAGGGGGCAAAGGTAAGAGGCCTGATGAGAACCTCAGGGATTTTAAGCAGTTCATCGCAGAAAACTACAAGCAGCATCCCCCATGGATCATGACTAGCAGTGTAACTGGTCTGGGCAGGGATGAACTTCTGCTTCACATGTCACAGCTTAGAAACTACTGGGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

292

Amino Acids

32.51

Weight (kDa)

9.69

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 115 - 232 2.1e-19 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22870
fragaria_vesca FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030
malus_domestica MD17G1236700.v1.1
prunus_persica Prupe.6G218100_v2.0.a1
pyrus_communis pycom02g15310 pycom15g26220 pycom17g23980
rosa_chinensis RchiOBHm_Chr2g0108521
rosa_laevigata RLG00000017675
rosa_roxburghii Rroxscaffold_2G00135060
rosa_rugosa Rorug02G0154000
rosa_samantha Rh2AG202900 Rh2BG215900 Rh2CG206900 Rh2DG210100
rosa_wichuraiana Rw2G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 195
AciI CCGC 2 cut(s) 118, 185
AclWI GGATC 1 cut(s) 803
AcsI RAATTY 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 696
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 4 cut(s) 205, 220, 260, 503
AflIII ACRYGT 1 cut(s) 846
AgeI ACCGGT 1 cut(s) 165
AgsI TTSAA 1 cut(s) 571
AjnI CCWGG 3 cut(s) 187, 433, 496
AloI GAACNNNNNNTCC 2 cut(s) 272, 304
AluBI AGCT 4 cut(s) 311, 518, 527, 856
AluI AGCT 4 cut(s) 311, 518, 527, 856
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 1 cut(s) 803
AlwNI CAGNNNCTG 1 cut(s) 527
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 3 cut(s) 335, 355, 728
ApeKI GCWGC 2 cut(s) 527, 781
ApoI RAATTY 1 cut(s) 341
AsiGI ACCGGT 1 cut(s) 165
AspS9I GGNCC 8 cut(s) 163, 168, 223, 234, 251, 336, 355, 360
AsuC2I CCSGG 4 cut(s) 200, 215, 231, 232
AsuHPI GGTGA 4 cut(s) 70, 76, 220, 478
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 6 cut(s) 163, 168, 223, 234, 251, 360
AxyI CCTNAGG 1 cut(s) 743
BbsI GAAGAC 1 cut(s) 446
BbvCI CCTCAGC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 514, 793
BccI CCATC 3 cut(s) 46, 158, 529
BciT130I CCWGG 3 cut(s) 189, 435, 498
BclI TGATCA 1 cut(s) 450
BcnI CCSGG 4 cut(s) 200, 215, 231, 232
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 4 cut(s) 8, 612, 638, 804
BisI GCNGC 2 cut(s) 528, 782
BlsI GCNGC 2 cut(s) 529, 783
Bme1390I CCNGG 7 cut(s) 189, 200, 215, 231, 232, 435, 498
Bme18I GGWCC 6 cut(s) 163, 168, 223, 234, 251, 360
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 8 cut(s) 163, 168, 223, 234, 251, 336, 355, 360
BmiI GGNNCC 2 cut(s) 235, 253
BmrFI CCNGG 7 cut(s) 189, 200, 215, 231, 232, 435, 498
BmrI ACTGGG 1 cut(s) 877
BmsI GCATC 2 cut(s) 598, 793
BmuI ACTGGG 1 cut(s) 877
BpiI GAAGAC 1 cut(s) 446
BpmI CTGGAG 2 cut(s) 210, 504
Bpu10I CCTNAGC 2 cut(s) 130, 312
BpuMI CCSGG 4 cut(s) 200, 215, 231, 232
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 5 cut(s) 213, 230, 393, 434, 791
BsaWI WCCGGW 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 4 cut(s) 205, 220, 260, 503
Bse118I RCCGGY 4 cut(s) 165, 260, 333, 357
Bse1I ACTGG 2 cut(s) 820, 872
Bse21I CCTNAGG 1 cut(s) 743
BseBI CCWGG 3 cut(s) 189, 435, 498
BseDI CCNNGG 5 cut(s) 213, 230, 393, 434, 791
BseGI GGATG 5 cut(s) 208, 415, 540, 784, 835
BseLI CCNNNNNNNGG 4 cut(s) 205, 220, 260, 503
BseMII CTCAG 3 cut(s) 144, 638, 757
BseNI ACTGG 2 cut(s) 820, 872
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 2 cut(s) 514, 793
BshFI GGCC 3 cut(s) 337, 357, 730
BshTI ACCGGT 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 7 cut(s) 166, 200, 215, 231, 261, 334, 358
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 4 cut(s) 205, 220, 260, 503
BsmAI GTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 3 cut(s) 337, 357, 730
BsoBI CYCGRG 1 cut(s) 230
Bsp143I GATC 3 cut(s) 450, 795, 871
Bsp19I CCATGG 1 cut(s) 791
BspACI CCGC 2 cut(s) 118, 185
BspANI GGCC 3 cut(s) 337, 357, 730
BspCNI CTCAG 3 cut(s) 143, 637, 756
BspHI TCATGA 1 cut(s) 798
BspLI GGNNCC 2 cut(s) 235, 253
BspPI GGATC 1 cut(s) 803
BsrFI RCCGGY 4 cut(s) 165, 260, 333, 357
BsrI ACTGG 2 cut(s) 820, 872
BssAI RCCGGY 4 cut(s) 165, 260, 333, 357
BssECI CCNNGG 5 cut(s) 213, 230, 393, 434, 791
BssMI GATC 3 cut(s) 450, 795, 871
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 2 cut(s) 393, 791
Bst2UI CCWGG 3 cut(s) 189, 435, 498
Bst4CI ACNGT 2 cut(s) 17, 644
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 7 cut(s) 130, 312, 426, 444, 624, 743, 857
BstDSI CCRYGG 1 cut(s) 791
BstEII GGTNACC 1 cut(s) 208
BstF5I GGATG 5 cut(s) 208, 415, 540, 784, 835
BstKTI GATC 3 cut(s) 453, 798, 874
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 3 cut(s) 450, 795, 871
BstMWI GCNNNNNNNGC 2 cut(s) 266, 524
BstNI CCWGG 3 cut(s) 189, 435, 498
BstNSI RCATGY 1 cut(s) 850
BstPI GGTNACC 1 cut(s) 208
BstSCI CCNGG 7 cut(s) 187, 198, 213, 229, 230, 433, 496
BstV1I GCAGC 2 cut(s) 514, 793
BstV2I GAAGAC 1 cut(s) 446
Bsu36I CCTNAGG 1 cut(s) 743
BsuRI GGCC 3 cut(s) 337, 357, 730
BtgI CCRYGG 1 cut(s) 791
BtgZI GCGATG 1 cut(s) 748
BtsCI GGATG 5 cut(s) 208, 415, 540, 784, 835
BtsI GCAGTG 1 cut(s) 814
BtsIMutI CAGTG 1 cut(s) 814
Cac8I GCNNGC 1 cut(s) 262
CaiI CAGNNNCTG 1 cut(s) 527
CciI TCATGA 1 cut(s) 798
Cfr10I RCCGGY 4 cut(s) 165, 260, 333, 357
Cfr13I GGNCC 8 cut(s) 163, 168, 223, 234, 251, 336, 355, 360
Cfr9I CCCGGG 1 cut(s) 230
CpoI CGGWCCG 1 cut(s) 168
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 481
CspAI ACCGGT 1 cut(s) 165
CspI CGGWCCG 1 cut(s) 168
CviAII CATG 8 cut(s) 104, 122, 220, 329, 676, 792, 799, 847
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 7 cut(s) 130, 312, 426, 444, 624, 743, 857
DpnI GATC 3 cut(s) 452, 797, 873
DpnII GATC 3 cut(s) 450, 795, 871
DraIII CACNNNGTG 1 cut(s) 696
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
Eco130I CCWWGG 2 cut(s) 393, 791
Eco147I AGGCCT 1 cut(s) 730
Eco47I GGWCC 6 cut(s) 163, 168, 223, 234, 251, 360
Eco81I CCTNAGG 1 cut(s) 743
Eco88I CYCGRG 1 cut(s) 230
Eco91I GGTNACC 1 cut(s) 208
EcoO65I GGTNACC 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 3 cut(s) 187, 433, 496
EcoT14I CCWWGG 2 cut(s) 393, 791
ErhI CCWWGG 2 cut(s) 393, 791
FaeI CATG 8 cut(s) 107, 125, 223, 332, 679, 795, 802, 850
FaqI GGGAC 1 cut(s) 167
FatI CATG 8 cut(s) 103, 121, 219, 328, 675, 791, 798, 846
FauI CCCGC 2 cut(s) 125, 192
FbaI TGATCA 1 cut(s) 450
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 528, 782
FokI GGATG 5 cut(s) 215, 422, 547, 771, 842
Fsp4HI GCNGC 2 cut(s) 528, 782
FspBI CTAG 4 cut(s) 8, 612, 638, 804
GluI GCNGC 2 cut(s) 528, 782
GsuI CTGGAG 2 cut(s) 210, 504
HaeIII GGCC 3 cut(s) 337, 357, 730
HapII CCGG 7 cut(s) 166, 200, 215, 231, 261, 334, 358
HgaI GACGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 8 cut(s) 107, 125, 223, 332, 679, 795, 802, 850
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 1 cut(s) 192
HpaII CCGG 7 cut(s) 166, 200, 215, 231, 261, 334, 358
HphI GGTGA 4 cut(s) 70, 76, 220, 478
Hpy166II GTNNAC 2 cut(s) 196, 469
Hpy188I TCNGA 3 cut(s) 251, 534, 627
Hpy188III TCNNGA 4 cut(s) 295, 521, 568, 799
Hpy8I GTNNAC 2 cut(s) 196, 469
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 3 cut(s) 97, 154, 400
HpyCH4III ACNGT 2 cut(s) 17, 644
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 524
HpyF3I CTNAG 7 cut(s) 130, 312, 426, 444, 624, 743, 857
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 8 cut(s) 107, 125, 223, 332, 679, 795, 802, 850
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 450
Kzo9I GATC 3 cut(s) 450, 795, 871
LmnI GCTCC 1 cut(s) 523
Lsp1109I GCAGC 2 cut(s) 514, 793
LweI GCATC 2 cut(s) 598, 793
MaeI CTAG 4 cut(s) 8, 612, 638, 804
MaeIII GTNAC 4 cut(s) 208, 698, 811, 849
MalI GATC 3 cut(s) 452, 797, 873
MboI GATC 3 cut(s) 450, 795, 871
MboII GAAGA 7 cut(s) 33, 36, 39, 42, 415, 451, 556
MluCI AATT 2 cut(s) 341, 649
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 261
MreI CGCCGGCG 1 cut(s) 260
MroNI GCCGGC 1 cut(s) 260
MseI TTAA 3 cut(s) 276, 399, 753
MspI CCGG 7 cut(s) 166, 200, 215, 231, 261, 334, 358
MspR9I CCNGG 7 cut(s) 189, 200, 215, 231, 232, 435, 498
Mva1269I GAATGC 1 cut(s) 548
MvaI CCWGG 3 cut(s) 189, 435, 498
MwoI GCNNNNNNNGC 2 cut(s) 266, 524
NaeI GCCGGC 1 cut(s) 262
NciI CCSGG 4 cut(s) 200, 215, 231, 232
NcoI CCATGG 1 cut(s) 791
NdeII GATC 3 cut(s) 450, 795, 871
NgoMIV GCCGGC 1 cut(s) 260
NlaIII CATG 8 cut(s) 107, 125, 223, 332, 679, 795, 802, 850
NlaIV GGNNCC 2 cut(s) 235, 253
NmuCI GTSAC 3 cut(s) 208, 698, 849
NspI RCATGY 1 cut(s) 850
PagI TCATGA 1 cut(s) 798
PceI AGGCCT 1 cut(s) 730
PciI ACATGT 1 cut(s) 846
PctI GAATGC 1 cut(s) 548
PdiI GCCGGC 1 cut(s) 262
PflFI GACNNNGTC 1 cut(s) 221
PinAI ACCGGT 1 cut(s) 165
PkrI GCNGC 2 cut(s) 529, 783
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PscI ACATGT 1 cut(s) 846
Psp6I CCWGG 3 cut(s) 187, 433, 496
PspEI GGTNACC 1 cut(s) 208
PspGI CCWGG 3 cut(s) 187, 433, 496
PspN4I GGNNCC 2 cut(s) 235, 253
PspPI GGNCC 8 cut(s) 163, 168, 223, 234, 251, 336, 355, 360
PstNI CAGNNNCTG 1 cut(s) 527
PsyI GACNNNGTC 1 cut(s) 221
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
Rsr2I CGGWCCG 1 cut(s) 168
RsrII CGGWCCG 1 cut(s) 168
SalI GTCGAC 1 cut(s) 194
SaqAI TTAA 3 cut(s) 276, 399, 753
SatI GCNGC 2 cut(s) 528, 782
Sau3AI GATC 3 cut(s) 450, 795, 871
Sau96I GGNCC 8 cut(s) 163, 168, 223, 234, 251, 336, 355, 360
SchI GAGTC 1 cut(s) 201
ScrFI CCNGG 7 cut(s) 189, 200, 215, 231, 232, 435, 498
SfaNI GCATC 2 cut(s) 598, 793
SgrAI CRCCGGYG 1 cut(s) 260
SinI GGWCC 6 cut(s) 163, 168, 223, 234, 251, 360
SmaI CCCGGG 1 cut(s) 232
Sse9I AATT 2 cut(s) 341, 649
SseBI AGGCCT 1 cut(s) 730
SsiI CCGC 2 cut(s) 118, 185
SspMI CTAG 4 cut(s) 8, 612, 638, 804
StuI AGGCCT 1 cut(s) 730
StyD4I CCNGG 7 cut(s) 187, 198, 213, 229, 230, 433, 496
StyI CCWWGG 2 cut(s) 393, 791
TaaI ACNGT 2 cut(s) 17, 644
TaqI TCGA 2 cut(s) 137, 195
TasI AATT 2 cut(s) 341, 649
Tru1I TTAA 3 cut(s) 276, 399, 753
Tru9I TTAA 3 cut(s) 276, 399, 753
TscAI CASTG 1 cut(s) 814
TseFI GTSAC 3 cut(s) 208, 698, 849
TseI GCWGC 2 cut(s) 527, 781
Tsp45I GTSAC 3 cut(s) 208, 698, 849
TspDTI ATGAA 3 cut(s) 722, 751, 846
TspGWI ACGGA 1 cut(s) 160
TspMI CCCGGG 1 cut(s) 230
TspRI CASTG 1 cut(s) 814
Tth111I GACNNNGTC 1 cut(s) 221
VpaK11BI GGWCC 6 cut(s) 163, 168, 223, 234, 251, 360
XapI RAATTY 1 cut(s) 341
XceI RCATGY 1 cut(s) 850
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XmaI CCCGGG 1 cut(s) 230
XmiI GTMKAC 1 cut(s) 195
XspI CTAG 4 cut(s) 8, 612, 638, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.