pycom02g15310

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0010778
Physical Location & Seq
Reverse (-)
12047125 .. 12047556
432 bp
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UTR
Exon/CDS
Intron
pycom02g15310.1

Sequence Viewer

Length: 348 bp
ATGGATTGGTCTGCATTCACCAAAGGTTTCTTTTGGAACAGACATACTCTTGTTACCGTCCTGCTCCTTGTTGATGCTAGTGTTCCGCCTCAGAAAACCGTCCTAGATTACGCTAATTTGCTTGGACGTAACAATATACCAATGACTTTTGTCTTCACCAAGTGTGACAAAATGAGGGCCGGCAAAGGTAAAAGGGCAGATGAGAACCTCAGGGATTTTCAGCAGTTTATCGAAGAAAACTACCGCGTACGCACCTCCCCGTGGATCATGACTAGCAGTGTAACTGGCTTCGGTATGGATGAACTTTTGCCCCATATGTCACAACTTAGAGACTACTGGGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

116

Amino Acids

13.48

Weight (kDa)

7.89

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 19 - 107 2.6e-07 Elongation factor Tu GTP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22870
fragaria_vesca FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030
malus_domestica MD17G1236700.v1.1
prunus_persica Prupe.6G218100_v2.0.a1
pyrus_communis pycom02g15310 pycom15g26220 pycom17g23980
rosa_chinensis RchiOBHm_Chr2g0108521
rosa_laevigata RLG00000017675
rosa_roxburghii Rroxscaffold_2G00135060
rosa_rugosa Rorug02G0154000
rosa_samantha Rh2AG202900 Rh2BG215900 Rh2CG206900 Rh2DG210100
rosa_wichuraiana Rw2G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 246
AciI CCGC 2 cut(s) 86, 244
AclWI GGATC 1 cut(s) 272
AdeI CACNNNGTG 1 cut(s) 162
AfaI GTAC 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 324
AlwI GGATC 1 cut(s) 272
AoxI GGCC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 10, 148
AxyI CCTNAGG 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 3 cut(s) 78, 104, 273
BmgT120I GGNCC 1 cut(s) 177
BmrI ACTGGG 1 cut(s) 346
BmsI GCATC 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 346
BoxI GACNNNNGTC 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 289, 341
Bse21I CCTNAGG 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMII CTCAG 2 cut(s) 104, 223
BseNI ACTGG 2 cut(s) 289, 341
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 180
BsiWI CGTACG 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 261
BsmAI GTCTC 1 cut(s) 324
BsmI GAATGC 1 cut(s) 14
BsnI GGCC 1 cut(s) 179
Bsp143I GATC 2 cut(s) 264, 340
BspACI CCGC 2 cut(s) 86, 244
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 2 cut(s) 103, 222
BspFNI CGCG 1 cut(s) 246
BspHI TCATGA 1 cut(s) 267
BspPI GGATC 1 cut(s) 272
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 2 cut(s) 289, 341
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 2 cut(s) 264, 340
Bst4CI ACNGT 2 cut(s) 58, 100
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 3 cut(s) 90, 209, 326
BstDSI CCRYGG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 246
BstKTI GATC 2 cut(s) 267, 343
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 2 cut(s) 264, 340
BstPAI GACNNNNGTC 1 cut(s) 149
BstUI CGCG 1 cut(s) 246
BstV2I GAAGAC 1 cut(s) 145
Bsu36I CCTNAGG 1 cut(s) 209
BsuRI GGCC 1 cut(s) 179
BtgI CCRYGG 1 cut(s) 260
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 283
Cac8I GCNNGC 1 cut(s) 181
CciI TCATGA 1 cut(s) 267
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 177
Csp6I GTAC 1 cut(s) 248
CviAII CATG 1 cut(s) 268
CviJI RGCY 2 cut(s) 179, 288
CviKI_1 RGCY 2 cut(s) 179, 288
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 3 cut(s) 90, 209, 326
DpnI GATC 2 cut(s) 266, 342
DpnII GATC 2 cut(s) 264, 340
DraIII CACNNNGTG 1 cut(s) 162
EciI GGCGGA 1 cut(s) 75
Eco81I CCTNAGG 1 cut(s) 209
FaeI CATG 1 cut(s) 271
FaiI YATR 6 cut(s) 45, 137, 269, 296, 315, 317
FatI CATG 1 cut(s) 267
FauNDI CATATG 1 cut(s) 315
FokI GGATG 1 cut(s) 311
FspBI CTAG 3 cut(s) 78, 104, 273
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 180
Hin1II CATG 1 cut(s) 271
HpaII CCGG 1 cut(s) 180
HphI GGTGA 2 cut(s) 10, 148
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 1 cut(s) 268
HpyCH4III ACNGT 2 cut(s) 58, 100
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 14
HpyF3I CTNAG 3 cut(s) 90, 209, 326
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 1 cut(s) 271
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Kzo9I GATC 2 cut(s) 264, 340
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 5 cut(s) 74, 193, 196, 270, 322
LweI GCATC 1 cut(s) 64
MaeI CTAG 3 cut(s) 78, 104, 273
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 5 cut(s) 52, 128, 164, 280, 318
MalI GATC 2 cut(s) 266, 342
MboI GATC 2 cut(s) 264, 340
MboII GAAGA 2 cut(s) 145, 245
MluCI AATT 1 cut(s) 115
MnlI CCTC 4 cut(s) 99, 168, 218, 265
MroNI GCCGGC 1 cut(s) 179
MspI CCGG 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 14
MvnI CGCG 1 cut(s) 246
NaeI GCCGGC 1 cut(s) 181
NdeI CATATG 1 cut(s) 315
NdeII GATC 2 cut(s) 264, 340
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 1 cut(s) 271
NmuCI GTSAC 2 cut(s) 164, 318
PagI TCATGA 1 cut(s) 267
PctI GAATGC 1 cut(s) 14
PdiI GCCGGC 1 cut(s) 181
Pfl23II CGTACG 1 cut(s) 247
PshAI GACNNNNGTC 1 cut(s) 149
PspLI CGTACG 1 cut(s) 247
PspPI GGNCC 1 cut(s) 177
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
Sau3AI GATC 2 cut(s) 264, 340
Sau96I GGNCC 1 cut(s) 177
SetI ASST 5 cut(s) 28, 130, 190, 210, 257
SfaNI GCATC 1 cut(s) 64
Sse9I AATT 1 cut(s) 115
SsiI CCGC 2 cut(s) 86, 244
SspMI CTAG 3 cut(s) 78, 104, 273
TaaI ACNGT 2 cut(s) 58, 100
TaiI ACGT 1 cut(s) 130
TaqI TCGA 1 cut(s) 231
TasI AATT 1 cut(s) 115
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 2 cut(s) 164, 318
Tsp45I GTSAC 2 cut(s) 164, 318
TspDTI ATGAA 1 cut(s) 315
TspRI CASTG 1 cut(s) 283
XspI CTAG 3 cut(s) 78, 104, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.