Rh2BG215900

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0010778
Physical Location & Seq
Reverse (-)
20539637 .. 20542310
2674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG215900.1

Sequence Viewer

Length: 888 bp
ATGCTACTAGCAAACCGTCTGCTATTCACTTCCATTTTCTTATCACCATCTTCTTCTTCTTCTCCCTCTCTAAAACCCCAACCTCTCACCCTCACCTTCTCAAACCCAACCCATGCAAAACCCACCCGCCATGTCTCCTCAGCCTCGAAAACCACACCCATCTTGGAGAAGGACCGGTCCGTCCTGTTCGTCCCGCCCGGAGTCGACCCGGATGAGGTGACCCCGGACATGGTCCTACCCGGCTCCAACATCGTTATCGGACCCTACGCCGGCGACGCCAAGATTAAGGAGGTGGTGTTCGTCAAGAGCAGTAGCAGAGCTAAGGACTGCCCCAAACATGACCGGCCCGAATTCGCTATATTGGGCCGGTCCAATGTGGGCAAGTCCTCGCTTATCAATGCCTTGGTTAAGAAGAAGGATGTTGCTCTCACATCTAAGAAGCCAGGGAAGACTAAGTTGATCAATCATTTCTTGGTGAACAAAAGTTGGTACTTTGTGGATTTGCCTGGTTATGGGTTTGCTAAAGCTCCAGAAGCTGCTCGGATGGATTGGTCGGCATTCACTAAAGGTTTCTTCTTGAACAGAGATAATCTCGTTGCTGTTCTACTTCTTGTCGACGCTAGTGTTCCACCTCAGAGGATTGACCTAGACTGTGCGAATTGGCTTGGACGAAATAATATACCCATGACTTTTGTCTTCACAAAGTGTGACAAAATGAAAGGGGGCAAAGGTAAGAGGCCTGATGAGAACCTCCGGGATTTTAAGCAGTTCATCGCAGAAAACTACAAGCAGCATCCCCCATGGATCATGACTAGCAGTGTAACTGGTTTGGGCAGGGATGAACTTCTGCTTCACATGTCACAGCTTAGAAACTACTGGGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

295

Amino Acids

32.86

Weight (kDa)

9.69

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 118 - 235 2.2e-19 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22870
fragaria_vesca FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030
malus_domestica MD17G1236700.v1.1
prunus_persica Prupe.6G218100_v2.0.a1
pyrus_communis pycom02g15310 pycom15g26220 pycom17g23980
rosa_chinensis RchiOBHm_Chr2g0108521
rosa_laevigata RLG00000017675
rosa_roxburghii Rroxscaffold_2G00135060
rosa_rugosa Rorug02G0154000
rosa_samantha Rh2AG202900 Rh2BG215900 Rh2CG206900 Rh2DG210100
rosa_wichuraiana Rw2G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AccI GTMKAC 2 cut(s) 204, 615
AciI CCGC 2 cut(s) 127, 194
AclWI GGATC 1 cut(s) 812
AcsI RAATTY 1 cut(s) 350
AcyI GRCGYC 1 cut(s) 276
AdeI CACNNNGTG 1 cut(s) 705
AfaI GTAC 1 cut(s) 491
AfiI CCNNNNNNNGG 4 cut(s) 214, 229, 269, 512
AflIII ACRYGT 1 cut(s) 855
AgeI ACCGGT 1 cut(s) 174
AgsI TTSAA 1 cut(s) 580
AjnI CCWGG 2 cut(s) 442, 505
AloI GAACNNNNNNTCC 2 cut(s) 281, 313
AluBI AGCT 4 cut(s) 320, 527, 536, 865
AluI AGCT 4 cut(s) 320, 527, 536, 865
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 1 cut(s) 812
AlwNI CAGNNNCTG 1 cut(s) 536
AoxI GGCC 3 cut(s) 344, 364, 737
ApeKI GCWGC 2 cut(s) 536, 790
ApoI RAATTY 1 cut(s) 350
AsiGI ACCGGT 1 cut(s) 174
AspS9I GGNCC 7 cut(s) 172, 177, 232, 260, 345, 364, 369
AsuC2I CCSGG 5 cut(s) 198, 209, 224, 240, 755
AsuHPI GGTGA 5 cut(s) 36, 79, 85, 229, 487
AvaII GGWCC 5 cut(s) 172, 177, 232, 260, 369
BbsI GAAGAC 2 cut(s) 455, 688
BbvCI CCTCAGC 1 cut(s) 139
BbvI GCAGC 2 cut(s) 523, 802
BccI CCATC 3 cut(s) 55, 167, 538
BciT130I CCWGG 2 cut(s) 444, 507
BclI TGATCA 1 cut(s) 459
BcnI CCSGG 5 cut(s) 198, 209, 224, 240, 755
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 4 cut(s) 8, 621, 647, 813
BisI GCNGC 2 cut(s) 537, 791
BlsI GCNGC 2 cut(s) 538, 792
Bme1390I CCNGG 7 cut(s) 198, 209, 224, 240, 444, 507, 755
Bme18I GGWCC 5 cut(s) 172, 177, 232, 260, 369
BmgT120I GGNCC 7 cut(s) 172, 177, 232, 260, 345, 364, 369
BmiI GGNNCC 2 cut(s) 244, 262
BmrFI CCNGG 7 cut(s) 198, 209, 224, 240, 444, 507, 755
BmrI ACTGGG 1 cut(s) 886
BmsI GCATC 1 cut(s) 802
BmuI ACTGGG 1 cut(s) 886
BoxI GACNNNNGTC 1 cut(s) 692
BpiI GAAGAC 2 cut(s) 455, 688
BplI GAGNNNNNCTC 2 cut(s) 576, 608
BpmI CTGGAG 1 cut(s) 513
Bpu10I CCTNAGC 2 cut(s) 139, 321
BpuMI CCSGG 5 cut(s) 198, 209, 224, 240, 755
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 4 cut(s) 222, 402, 443, 800
BsaWI WCCGGW 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 4 cut(s) 214, 229, 269, 512
Bse118I RCCGGY 4 cut(s) 174, 269, 342, 366
Bse1I ACTGG 2 cut(s) 829, 881
BseBI CCWGG 2 cut(s) 444, 507
BseDI CCNNGG 4 cut(s) 222, 402, 443, 800
BseGI GGATG 5 cut(s) 217, 424, 549, 793, 844
BseLI CCNNNNNNNGG 4 cut(s) 214, 229, 269, 512
BseMII CTCAG 2 cut(s) 153, 647
BseNI ACTGG 2 cut(s) 829, 881
BseRI GAGGAG 1 cut(s) 127
BseXI GCAGC 2 cut(s) 523, 802
BshFI GGCC 3 cut(s) 346, 366, 739
BshTI ACCGGT 1 cut(s) 174
BsiSI CCGG 9 cut(s) 175, 198, 209, 224, 240, 270, 343, 367, 754
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 4 cut(s) 214, 229, 269, 512
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 176
BsmI GAATGC 1 cut(s) 557
BsnI GGCC 3 cut(s) 346, 366, 739
Bsp143I GATC 3 cut(s) 459, 804, 880
Bsp19I CCATGG 1 cut(s) 800
BspACI CCGC 2 cut(s) 127, 194
BspANI GGCC 3 cut(s) 346, 366, 739
BspCNI CTCAG 2 cut(s) 152, 646
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 2 cut(s) 244, 262
BspPI GGATC 1 cut(s) 812
BsrFI RCCGGY 4 cut(s) 174, 269, 342, 366
BsrI ACTGG 2 cut(s) 829, 881
BssAI RCCGGY 4 cut(s) 174, 269, 342, 366
BssECI CCNNGG 4 cut(s) 222, 402, 443, 800
BssMI GATC 3 cut(s) 459, 804, 880
BssNI GRCGYC 1 cut(s) 276
BssT1I CCWWGG 2 cut(s) 402, 800
Bst2UI CCWGG 2 cut(s) 444, 507
Bst4CI ACNGT 2 cut(s) 17, 653
BstACI GRCGYC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 6 cut(s) 139, 321, 435, 453, 633, 866
BstDSI CCRYGG 1 cut(s) 800
BstEII GGTNACC 1 cut(s) 217
BstF5I GGATG 5 cut(s) 217, 424, 549, 793, 844
BstKTI GATC 3 cut(s) 462, 807, 883
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 3 cut(s) 459, 804, 880
BstMWI GCNNNNNNNGC 2 cut(s) 275, 533
BstNI CCWGG 2 cut(s) 444, 507
BstNSI RCATGY 1 cut(s) 859
BstPAI GACNNNNGTC 1 cut(s) 692
BstPI GGTNACC 1 cut(s) 217
BstSCI CCNGG 7 cut(s) 196, 207, 222, 238, 442, 505, 753
BstV1I GCAGC 2 cut(s) 523, 802
BstV2I GAAGAC 2 cut(s) 455, 688
BsuRI GGCC 3 cut(s) 346, 366, 739
BtgI CCRYGG 1 cut(s) 800
BtgZI GCGATG 1 cut(s) 757
BtsCI GGATG 5 cut(s) 217, 424, 549, 793, 844
BtsI GCAGTG 1 cut(s) 823
BtsIMutI CAGTG 1 cut(s) 823
Cac8I GCNNGC 1 cut(s) 271
CaiI CAGNNNCTG 1 cut(s) 536
CciI TCATGA 1 cut(s) 807
Cfr10I RCCGGY 4 cut(s) 174, 269, 342, 366
Cfr13I GGNCC 7 cut(s) 172, 177, 232, 260, 345, 364, 369
CpoI CGGWCCG 1 cut(s) 177
CseI GACGC 2 cut(s) 284, 626
Csp6I GTAC 1 cut(s) 490
CspAI ACCGGT 1 cut(s) 174
CspI CGGWCCG 1 cut(s) 177
CviAII CATG 8 cut(s) 113, 131, 229, 338, 685, 801, 808, 856
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 6 cut(s) 139, 321, 435, 453, 633, 866
DpnI GATC 3 cut(s) 461, 806, 882
DpnII GATC 3 cut(s) 459, 804, 880
DraIII CACNNNGTG 1 cut(s) 705
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
Eco130I CCWWGG 2 cut(s) 402, 800
Eco147I AGGCCT 1 cut(s) 739
Eco47I GGWCC 5 cut(s) 172, 177, 232, 260, 369
Eco91I GGTNACC 1 cut(s) 217
EcoO65I GGTNACC 1 cut(s) 217
EcoRI GAATTC 1 cut(s) 350
EcoRII CCWGG 2 cut(s) 442, 505
EcoT14I CCWWGG 2 cut(s) 402, 800
ErhI CCWWGG 2 cut(s) 402, 800
FaeI CATG 8 cut(s) 116, 134, 232, 341, 688, 804, 811, 859
FaqI GGGAC 1 cut(s) 176
FatI CATG 8 cut(s) 112, 130, 228, 337, 684, 800, 807, 855
FauI CCCGC 2 cut(s) 134, 201
FbaI TGATCA 1 cut(s) 459
FblI GTMKAC 2 cut(s) 204, 615
Fnu4HI GCNGC 2 cut(s) 537, 791
FokI GGATG 5 cut(s) 224, 431, 556, 780, 851
Fsp4HI GCNGC 2 cut(s) 537, 791
FspBI CTAG 4 cut(s) 8, 621, 647, 813
GluI GCNGC 2 cut(s) 537, 791
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 3 cut(s) 346, 366, 739
HapII CCGG 9 cut(s) 175, 198, 209, 224, 240, 270, 343, 367, 754
HgaI GACGC 2 cut(s) 284, 626
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 8 cut(s) 116, 134, 232, 341, 688, 804, 811, 859
HincII GTYRAC 2 cut(s) 205, 616
HindII GTYRAC 2 cut(s) 205, 616
HinfI GANTC 1 cut(s) 201
HpaII CCGG 9 cut(s) 175, 198, 209, 224, 240, 270, 343, 367, 754
HphI GGTGA 5 cut(s) 36, 79, 85, 229, 487
Hpy166II GTNNAC 3 cut(s) 205, 478, 616
Hpy188I TCNGA 3 cut(s) 260, 543, 636
Hpy188III TCNNGA 4 cut(s) 304, 530, 577, 808
Hpy8I GTNNAC 3 cut(s) 205, 478, 616
Hpy99I CGWCG 2 cut(s) 278, 620
HpyAV CCTTC 3 cut(s) 106, 163, 409
HpyCH4III ACNGT 2 cut(s) 17, 653
HpyCH4V TGCA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 533
HpyF3I CTNAG 6 cut(s) 139, 321, 435, 453, 633, 866
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 8 cut(s) 116, 134, 232, 341, 688, 804, 811, 859
KroI GCCGGC 1 cut(s) 269
KroNI GCCGGC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 3 cut(s) 459, 804, 880
LmnI GCTCC 2 cut(s) 248, 532
Lsp1109I GCAGC 2 cut(s) 523, 802
LweI GCATC 1 cut(s) 802
MaeI CTAG 4 cut(s) 8, 621, 647, 813
MaeIII GTNAC 4 cut(s) 217, 707, 820, 858
MalI GATC 3 cut(s) 461, 806, 882
MboI GATC 3 cut(s) 459, 804, 880
MboII GAAGA 8 cut(s) 42, 45, 48, 51, 424, 460, 565, 688
MluCI AATT 2 cut(s) 350, 658
MlyI GAGTC 1 cut(s) 210
MmeI TCCRAC 1 cut(s) 270
MreI CGCCGGCG 1 cut(s) 269
MroNI GCCGGC 1 cut(s) 269
MseI TTAA 3 cut(s) 285, 408, 762
MspI CCGG 9 cut(s) 175, 198, 209, 224, 240, 270, 343, 367, 754
MspR9I CCNGG 7 cut(s) 198, 209, 224, 240, 444, 507, 755
Mva1269I GAATGC 1 cut(s) 557
MvaI CCWGG 2 cut(s) 444, 507
MwoI GCNNNNNNNGC 2 cut(s) 275, 533
NaeI GCCGGC 1 cut(s) 271
NciI CCSGG 5 cut(s) 198, 209, 224, 240, 755
NcoI CCATGG 1 cut(s) 800
NdeII GATC 3 cut(s) 459, 804, 880
NgoMIV GCCGGC 1 cut(s) 269
NlaIII CATG 8 cut(s) 116, 134, 232, 341, 688, 804, 811, 859
NlaIV GGNNCC 2 cut(s) 244, 262
NmuCI GTSAC 3 cut(s) 217, 707, 858
NspI RCATGY 1 cut(s) 859
PagI TCATGA 1 cut(s) 807
PceI AGGCCT 1 cut(s) 739
PciI ACATGT 1 cut(s) 855
PctI GAATGC 1 cut(s) 557
PdiI GCCGGC 1 cut(s) 271
PflFI GACNNNGTC 1 cut(s) 230
PfoI TCCNGGA 1 cut(s) 753
PinAI ACCGGT 1 cut(s) 174
PkrI GCNGC 2 cut(s) 538, 792
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PscI ACATGT 1 cut(s) 855
PshAI GACNNNNGTC 1 cut(s) 692
Psp6I CCWGG 2 cut(s) 442, 505
PspEI GGTNACC 1 cut(s) 217
PspGI CCWGG 2 cut(s) 442, 505
PspN4I GGNNCC 2 cut(s) 244, 262
PspPI GGNCC 7 cut(s) 172, 177, 232, 260, 345, 364, 369
PstNI CAGNNNCTG 1 cut(s) 536
PsyI GACNNNGTC 1 cut(s) 230
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
Rsr2I CGGWCCG 1 cut(s) 177
RsrII CGGWCCG 1 cut(s) 177
SalI GTCGAC 2 cut(s) 203, 614
SaqAI TTAA 3 cut(s) 285, 408, 762
SatI GCNGC 2 cut(s) 537, 791
Sau3AI GATC 3 cut(s) 459, 804, 880
Sau96I GGNCC 7 cut(s) 172, 177, 232, 260, 345, 364, 369
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 7 cut(s) 198, 209, 224, 240, 444, 507, 755
SfaNI GCATC 1 cut(s) 802
SgrAI CRCCGGYG 1 cut(s) 269
SinI GGWCC 5 cut(s) 172, 177, 232, 260, 369
Sse9I AATT 2 cut(s) 350, 658
SseBI AGGCCT 1 cut(s) 739
SsiI CCGC 2 cut(s) 127, 194
SspMI CTAG 4 cut(s) 8, 621, 647, 813
StuI AGGCCT 1 cut(s) 739
StyD4I CCNGG 7 cut(s) 196, 207, 222, 238, 442, 505, 753
StyI CCWWGG 2 cut(s) 402, 800
TaaI ACNGT 2 cut(s) 17, 653
TaqI TCGA 3 cut(s) 146, 204, 615
TasI AATT 2 cut(s) 350, 658
Tru1I TTAA 3 cut(s) 285, 408, 762
Tru9I TTAA 3 cut(s) 285, 408, 762
TscAI CASTG 1 cut(s) 823
TseFI GTSAC 3 cut(s) 217, 707, 858
TseI GCWGC 2 cut(s) 536, 790
Tsp45I GTSAC 3 cut(s) 217, 707, 858
TspDTI ATGAA 3 cut(s) 731, 760, 855
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 1 cut(s) 823
Tth111I GACNNNGTC 1 cut(s) 230
VpaK11BI GGWCC 5 cut(s) 172, 177, 232, 260, 369
XapI RAATTY 1 cut(s) 350
XceI RCATGY 1 cut(s) 859
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmiI GTMKAC 2 cut(s) 204, 615
XspI CTAG 4 cut(s) 8, 621, 647, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.