Prupe.6G218100_v2.0.a1

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010778
Physical Location & Seq
Forward (+)
22482093 .. 22484999
2907 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G218100.1

Sequence Viewer

Length: 906 bp
ATGTTACTGAGAAACCGCCTCCTGAGCCCGCAAATCACTTCTTTCTTATCACTATCTTCCTCTCCACCTCTAAAAATTCAGCCTTTCACTCTCTCCTTCCGAACCCTCATCTCAAATCCGACCCATCGAAACCCAACCCCAAACCGCCATGTTTCAGCTTCAAAAGCCACGGCTAACGCAGCAATCTTCGATAAGACCCTCCTGTTTATCCCGCCCGGGGTTGACCCGGCCGAGGTGACCGAGAACATGGTGCTATCCGGGTCGAATATCGTGCTCGGACCCTATGCGGGTGACGCCAAGATTAAGGAGGTGGAGTTCGTGAAGAGCAGTGCTAGAGCTAAGGATTGCCCCAAACATGACCGACCCGAATTTGCTATTCTGGGTCGCTCCAATGTGGGCAAGTCCTCACTTATTAATGCTTTGGTTCGCAAGAAGGATGTTGCACTTACATCTAAGAAACCAGGGAAGACTAAGCTTATCAATCATTTCTTGGTGAACAAAAGTTGGTACTTTGTGGATTTGCCTGGTTATGGGTTTGCTAAAGCTCCAGAAGCAGCTCGAATGGATTGGTCTGCATTCACGAAAGGTTTCTTTTTGAACCGAGATACTCTTGTTGCCGTGTTACTTCTAGTTGATGCTAGTGTTCCACCTCAGAAGATCGACCTTGACTGCGCTAATTGGCTTGGACGTAACAATATACCAATGACTTTTGTCTTCACCAAGTGTGACAAAATGAAGGCGAGCAAAGGTAAAAGGCCAGATGAGAACCTTAGGGATTTTCAGCAGTTTATCCGAGAAAACTACCGGGTACAACCCCCATGGATAATGACTAGCAGTGTAACTGGCTTTGGCAGGGATGAACTTTTGCTTCACATGTCACAGCTTAGAAACTACTGGGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

302

Amino Acids

33.79

Weight (kDa)

9.86

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22870
fragaria_vesca FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030
malus_domestica MD17G1236700.v1.1
prunus_persica Prupe.6G218100_v2.0.a1
pyrus_communis pycom02g15310 pycom15g26220 pycom17g23980
rosa_chinensis RchiOBHm_Chr2g0108521
rosa_laevigata RLG00000017675
rosa_roxburghii Rroxscaffold_2G00135060
rosa_rugosa Rorug02G0154000
rosa_samantha Rh2AG202900 Rh2BG215900 Rh2CG206900 Rh2DG210100
rosa_wichuraiana Rw2G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 16, 29, 145, 212, 287
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 2 cut(s) 75, 368
AcyI GRCGYC 1 cut(s) 294
AdeI CACNNNGTG 1 cut(s) 723
AfaI GTAC 2 cut(s) 509, 810
AfiI CCNNNNNNNGG 4 cut(s) 217, 232, 287, 530
AflIII ACRYGT 1 cut(s) 873
AgsI TTSAA 2 cut(s) 162, 598
AjnI CCWGG 2 cut(s) 460, 523
AloI GAACNNNNNNTCC 2 cut(s) 299, 331
AluBI AGCT 6 cut(s) 158, 338, 475, 545, 557, 883
AluI AGCT 6 cut(s) 158, 338, 475, 545, 557, 883
Alw21I GWGCWC 1 cut(s) 276
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 2 cut(s) 228, 755
ApeKI GCWGC 2 cut(s) 179, 554
ApoI RAATTY 2 cut(s) 75, 368
AseI ATTAAT 1 cut(s) 414
Asp700I GAANNNNTTC 1 cut(s) 587
AspLEI GCGC 1 cut(s) 674
AspS9I GGNCC 1 cut(s) 278
AsuC2I CCSGG 5 cut(s) 216, 217, 227, 259, 806
AsuHPI GGTGA 4 cut(s) 247, 302, 505, 709
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 278
AxyI CCTNAGG 1 cut(s) 770
BaeI ACNNNNGTAYC 2 cut(s) 597, 630
BanII GRGCYC 1 cut(s) 29
BbsI GAAGAC 2 cut(s) 473, 706
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 191, 566
BccI CCATC 1 cut(s) 132
BceAI ACGGC 2 cut(s) 186, 602
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BciT130I CCWGG 2 cut(s) 462, 525
BcnI CCSGG 5 cut(s) 216, 217, 227, 259, 806
BfaI CTAG 4 cut(s) 333, 629, 639, 831
BisI GCNGC 2 cut(s) 180, 555
BlsI GCNGC 2 cut(s) 181, 556
Bme1390I CCNGG 7 cut(s) 216, 217, 227, 259, 462, 525, 806
Bme18I GGWCC 1 cut(s) 278
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 7 cut(s) 216, 217, 227, 259, 462, 525, 806
BmrI ACTGGG 1 cut(s) 904
BmsI GCATC 1 cut(s) 625
BmuI ACTGGG 1 cut(s) 904
BoxI GACNNNNGTC 1 cut(s) 710
BpiI GAAGAC 2 cut(s) 473, 706
BpmI CTGGAG 1 cut(s) 531
Bpu10I CCTNAGC 2 cut(s) 23, 339
BpuMI CCSGG 5 cut(s) 216, 217, 227, 259, 806
BsaHI GRCGYC 1 cut(s) 294
BsaJI CCNNGG 6 cut(s) 168, 215, 216, 231, 461, 818
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 4 cut(s) 217, 232, 287, 530
Bse1I ACTGG 2 cut(s) 847, 899
Bse21I CCTNAGG 1 cut(s) 770
BseBI CCWGG 2 cut(s) 462, 525
BseDI CCNNGG 6 cut(s) 168, 215, 216, 231, 461, 818
BseGI GGATG 2 cut(s) 442, 862
BseLI CCNNNNNNNGG 4 cut(s) 217, 232, 287, 530
BseMII CTCAG 2 cut(s) 14, 665
BseNI ACTGG 2 cut(s) 847, 899
BseX3I CGGCCG 1 cut(s) 228
BseXI GCAGC 2 cut(s) 191, 566
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 2 cut(s) 230, 757
BsiEI CGRYCG 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 4 cut(s) 216, 227, 258, 805
BslI CCNNNNNNNGG 4 cut(s) 217, 232, 287, 530
BsmI GAATGC 1 cut(s) 575
BsnI GGCC 2 cut(s) 230, 757
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 29, 276
Bsp143I GATC 2 cut(s) 657, 898
Bsp19I CCATGG 1 cut(s) 818
BspACI CCGC 5 cut(s) 16, 29, 145, 212, 287
BspANI GGCC 2 cut(s) 230, 757
BspCNI CTCAG 2 cut(s) 15, 664
BspLI GGNNCC 1 cut(s) 280
BspQI GCTCTTC 1 cut(s) 317
BsrI ACTGG 2 cut(s) 847, 899
BssECI CCNNGG 6 cut(s) 168, 215, 216, 231, 461, 818
BssMI GATC 2 cut(s) 657, 898
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 818
Bst2UI CCWGG 2 cut(s) 462, 525
Bst6I CTCTTC 1 cut(s) 317
BstACI GRCGYC 1 cut(s) 294
BstC8I GCNNGC 2 cut(s) 29, 742
BstDEI CTNAG 8 cut(s) 8, 23, 339, 453, 471, 651, 770, 884
BstDSI CCRYGG 2 cut(s) 168, 818
BstEII GGTNACC 1 cut(s) 235
BstF5I GGATG 2 cut(s) 442, 862
BstHHI GCGC 1 cut(s) 674
BstKTI GATC 2 cut(s) 660, 901
BstMBI GATC 2 cut(s) 657, 898
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 5 cut(s) 24, 164, 179, 293, 551
BstNI CCWGG 2 cut(s) 462, 525
BstNSI RCATGY 1 cut(s) 877
BstPAI GACNNNNGTC 1 cut(s) 710
BstPI GGTNACC 1 cut(s) 235
BstSCI CCNGG 7 cut(s) 214, 215, 225, 257, 460, 523, 804
BstV1I GCAGC 2 cut(s) 191, 566
BstV2I GAAGAC 2 cut(s) 473, 706
BstZI CGGCCG 1 cut(s) 228
Bsu36I CCTNAGG 1 cut(s) 770
BsuRI GGCC 2 cut(s) 230, 757
BtgI CCRYGG 2 cut(s) 168, 818
BtsCI GGATG 2 cut(s) 442, 862
BtsI GCAGTG 2 cut(s) 334, 841
BtsIMutI CAGTG 2 cut(s) 334, 841
Cac8I GCNNGC 2 cut(s) 29, 742
CfoI GCGC 1 cut(s) 674
Cfr13I GGNCC 1 cut(s) 278
Cfr9I CCCGGG 1 cut(s) 215
CseI GACGC 1 cut(s) 302
Csp6I GTAC 2 cut(s) 508, 809
CviAII CATG 5 cut(s) 149, 247, 356, 819, 874
CviQI GTAC 2 cut(s) 508, 809
DdeI CTNAG 8 cut(s) 8, 23, 339, 453, 471, 651, 770, 884
DpnI GATC 2 cut(s) 659, 900
DpnII GATC 2 cut(s) 657, 898
DraIII CACNNNGTG 1 cut(s) 723
EaeI YGGCCR 1 cut(s) 228
EagI CGGCCG 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
EclXI CGGCCG 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 818
Eco24I GRGCYC 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 278
Eco52I CGGCCG 1 cut(s) 228
Eco81I CCTNAGG 1 cut(s) 770
Eco88I CYCGRG 1 cut(s) 215
Eco91I GGTNACC 1 cut(s) 235
EcoO65I GGTNACC 1 cut(s) 235
EcoRII CCWGG 2 cut(s) 460, 523
EcoT14I CCWWGG 1 cut(s) 818
EcoT38I GRGCYC 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 818
FaeI CATG 5 cut(s) 152, 250, 359, 822, 877
FaiI YATR 8 cut(s) 150, 248, 285, 357, 531, 698, 820, 875
FatI CATG 5 cut(s) 148, 246, 355, 818, 873
FauI CCCGC 3 cut(s) 36, 219, 280
Fnu4HI GCNGC 2 cut(s) 180, 555
FokI GGATG 2 cut(s) 449, 869
FriOI GRGCYC 1 cut(s) 29
Fsp4HI GCNGC 2 cut(s) 180, 555
FspBI CTAG 4 cut(s) 333, 629, 639, 831
GlaI GCGC 1 cut(s) 673
GluI GCNGC 2 cut(s) 180, 555
GsuI CTGGAG 1 cut(s) 531
HaeIII GGCC 2 cut(s) 230, 757
HapII CCGG 4 cut(s) 216, 227, 258, 805
HgaI GACGC 1 cut(s) 302
HhaI GCGC 1 cut(s) 674
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 5 cut(s) 152, 250, 359, 822, 877
Hin6I GCGC 1 cut(s) 672
HinP1I GCGC 1 cut(s) 672
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 473
HpaII CCGG 4 cut(s) 216, 227, 258, 805
HphI GGTGA 4 cut(s) 247, 302, 505, 709
Hpy166II GTNNAC 2 cut(s) 223, 496
Hpy188I TCNGA 5 cut(s) 101, 120, 278, 654, 794
Hpy188III TCNNGA 4 cut(s) 22, 319, 548, 580
Hpy8I GTNNAC 2 cut(s) 223, 496
HpyAV CCTTC 3 cut(s) 106, 427, 730
HpyCH4IV ACGT 1 cut(s) 688
HpyCH4V TGCA 2 cut(s) 443, 575
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 164, 179, 293, 551
HpyF3I CTNAG 8 cut(s) 8, 23, 339, 453, 471, 651, 770, 884
HpySE526I ACGT 1 cut(s) 688
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 5 cut(s) 152, 250, 359, 822, 877
HspAI GCGC 1 cut(s) 672
Kzo9I GATC 2 cut(s) 657, 898
LguI GCTCTTC 1 cut(s) 317
LmnI GCTCC 2 cut(s) 392, 550
Lsp1109I GCAGC 2 cut(s) 191, 566
LweI GCATC 1 cut(s) 625
MaeI CTAG 4 cut(s) 333, 629, 639, 831
MaeII ACGT 1 cut(s) 688
MaeIII GTNAC 8 cut(s) 3, 235, 290, 621, 689, 725, 838, 876
MalI GATC 2 cut(s) 659, 900
MboI GATC 2 cut(s) 657, 898
MboII GAAGA 6 cut(s) 48, 178, 334, 478, 667, 706
MhlI GDGCHC 2 cut(s) 29, 276
MluCI AATT 3 cut(s) 75, 368, 676
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 9 cut(s) 29, 70, 78, 116, 209, 226, 301, 415, 660
MroXI GAANNNNTTC 1 cut(s) 587
MseI TTAA 2 cut(s) 303, 414
MspI CCGG 4 cut(s) 216, 227, 258, 805
MspR9I CCNGG 7 cut(s) 216, 217, 227, 259, 462, 525, 806
Mva1269I GAATGC 1 cut(s) 575
MvaI CCWGG 2 cut(s) 462, 525
MwoI GCNNNNNNNGC 5 cut(s) 24, 164, 179, 293, 551
NciI CCSGG 5 cut(s) 216, 217, 227, 259, 806
NcoI CCATGG 1 cut(s) 818
NdeII GATC 2 cut(s) 657, 898
NlaIII CATG 5 cut(s) 152, 250, 359, 822, 877
NlaIV GGNNCC 1 cut(s) 280
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 4 cut(s) 235, 290, 725, 876
NspI RCATGY 1 cut(s) 877
PciI ACATGT 1 cut(s) 873
PciSI GCTCTTC 1 cut(s) 317
PctI GAATGC 1 cut(s) 575
PdmI GAANNNNTTC 1 cut(s) 587
PkrI GCNGC 2 cut(s) 181, 556
PscI ACATGT 1 cut(s) 873
PshAI GACNNNNGTC 1 cut(s) 710
PshBI ATTAAT 1 cut(s) 414
Psp6I CCWGG 2 cut(s) 460, 523
PspEI GGTNACC 1 cut(s) 235
PspGI CCWGG 2 cut(s) 460, 523
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 278
RsaI GTAC 2 cut(s) 509, 810
RsaNI GTAC 2 cut(s) 508, 809
SapI GCTCTTC 1 cut(s) 317
SaqAI TTAA 2 cut(s) 303, 414
SatI GCNGC 2 cut(s) 180, 555
Sau3AI GATC 2 cut(s) 657, 898
Sau96I GGNCC 1 cut(s) 278
ScrFI CCNGG 7 cut(s) 216, 217, 227, 259, 462, 525, 806
SduI GDGCHC 2 cut(s) 29, 276
SfaNI GCATC 1 cut(s) 625
SinI GGWCC 1 cut(s) 278
SmaI CCCGGG 1 cut(s) 217
Sse9I AATT 3 cut(s) 75, 368, 676
SsiI CCGC 5 cut(s) 16, 29, 145, 212, 287
SspMI CTAG 4 cut(s) 333, 629, 639, 831
StyD4I CCNGG 7 cut(s) 214, 215, 225, 257, 460, 523, 804
StyI CCWWGG 1 cut(s) 818
TaiI ACGT 1 cut(s) 691
TaqI TCGA 5 cut(s) 127, 189, 263, 559, 660
TaqII GACCGA 2 cut(s) 254, 375
TasI AATT 3 cut(s) 75, 368, 676
Tru1I TTAA 2 cut(s) 303, 414
Tru9I TTAA 2 cut(s) 303, 414
TscAI CASTG 2 cut(s) 334, 841
TseFI GTSAC 4 cut(s) 235, 290, 725, 876
TseI GCWGC 2 cut(s) 179, 554
Tsp45I GTSAC 4 cut(s) 235, 290, 725, 876
TspDTI ATGAA 2 cut(s) 749, 873
TspMI CCCGGG 1 cut(s) 215
TspRI CASTG 2 cut(s) 334, 841
VpaK11BI GGWCC 1 cut(s) 278
VspI ATTAAT 1 cut(s) 414
XapI RAATTY 2 cut(s) 75, 368
XceI RCATGY 1 cut(s) 877
XmaI CCCGGG 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 587
XspI CTAG 4 cut(s) 333, 629, 639, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.