Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010778

Physical Location & Seq

Genomic Coordinates Reverse (-)

13626811 .. 13632115

Gene Structure 5305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0154000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGGCTGCCGCAGGCCGTTTACTCAGGAAAGAAAAGAAAAGTCAAGAATCATACAATTGTGAATGGCAGCGGCGAAACACATCTGGATGGTTCGAGGACAAGTCGAAGGTCCGAAGCAGTTTCATTGAGGGTACTCTTCTTCCATGAGGCTGCAGATGGCAAATTCACTTCACTTACTGTTGCTGCAGGTGTTGACTCTTTGACAATAGTGACACGAACAGGGTTGACAACCTGTGTCGCATCAGTTTCCGGTATTGCCCCCCCATCCCCTCCCAAACCCAACAAAATTATGGAGATTGAAATCGGCTTTGAACTTCTTGTCGCTGGCTCTTTTGGCTTCAACAATTTCAGCACAAGGATCCCCTACCTATACACATTCCCTTCTCTAGACGCCTCAACAGCTGTGCAACTCAGAAGACAATTAAAGTCCCTTCCATCTCCATATCATCCGATTCTGGCAACTGTGAATGGCATCTTATGCTGGTCCGACGAAAAGGTGGGTGATGAAGTGAGAACCAAAGAGTATGCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

178

Amino Acids

19.28

Weight (kDa)

9.33

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22870
fragaria_vesca	FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030
malus_domestica	MD17G1236700.v1.1
prunus_persica	Prupe.6G218100_v2.0.a1
pyrus_communis	pycom02g15310 pycom15g26220 pycom17g23980
rosa_chinensis	RchiOBHm_Chr2g0108521
rosa_laevigata	RLG00000017675
rosa_roxburghii	Rroxscaffold_2G00135060
rosa_rugosa	Rorug02G0154000
rosa_samantha	Rh2AG202900 Rh2BG215900 Rh2CG206900 Rh2DG210100
rosa_wichuraiana	Rw2G016210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	179
Acc36I	ACCTGC	1 cut(s)	179
AciI	CCGC	2 cut(s)	11, 72
AclWI	GGATC	2 cut(s)	355, 368
AcsI	RAATTY	1 cut(s)	164
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	1 cut(s)	135
AgsI	TTSAA	3 cut(s)	302, 314, 343
AluBI	AGCT	1 cut(s)	404
AluI	AGCT	1 cut(s)	404
AlwI	GGATC	2 cut(s)	355, 368
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	4 cut(s)	7, 69, 152, 185
ApoI	RAATTY	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	111, 486
AsuHPI	GGTGA	1 cut(s)	515
AvaII	GGWCC	2 cut(s)	111, 486
BamHI	GGATCC	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	424
BbvI	GCAGC	3 cut(s)	81, 139, 172
BccI	CCATC	4 cut(s)	83, 152, 274, 445
BceAI	ACGGC	1 cut(s)	2
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	2 cut(s)	153, 186
BfuAI	ACCTGC	1 cut(s)	179
BisI	GCNGC	6 cut(s)	8, 11, 70, 73, 153, 186
BlsI	GCNGC	6 cut(s)	9, 12, 71, 74, 154, 187
Bme18I	GGWCC	2 cut(s)	111, 486
BmgT120I	GGNCC	2 cut(s)	111, 486
BmiI	GGNNCC	1 cut(s)	362
BmsI	GCATC	2 cut(s)	251, 483
BpiI	GAAGAC	1 cut(s)	424
BsaBI	GATNNNNATC	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	393
BsaWI	WCCGGW	1 cut(s)	251
Bse8I	GATNNNNATC	1 cut(s)	302
BseGI	GGATG	3 cut(s)	94, 266, 448
BseJI	GATNNNNATC	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	39, 427
BseXI	GCAGC	3 cut(s)	81, 139, 172
BshFI	GGCC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	360
BspACI	CCGC	2 cut(s)	11, 72
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	2 cut(s)	38, 426
BspLI	GGNNCC	1 cut(s)	362
BspMAI	CTGCAG	2 cut(s)	157, 190
BspMI	ACCTGC	1 cut(s)	179
BspPI	GGATC	2 cut(s)	355, 368
BssMI	GATC	1 cut(s)	360
BssNI	GRCGYC	1 cut(s)	393
Bst4CI	ACNGT	2 cut(s)	181, 466
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	393
BstAPI	GCANNNNNTGC	1 cut(s)	480
BstC8I	GCNNGC	2 cut(s)	15, 328
BstDEI	CTNAG	2 cut(s)	25, 413
BstF5I	GGATG	3 cut(s)	94, 266, 448
BstKTI	GATC	1 cut(s)	363
BstMBI	GATC	1 cut(s)	360
BstMWI	GCNNNNNNNGC	3 cut(s)	336, 401, 480
BstSFI	CTRYAG	2 cut(s)	153, 186
BstV1I	GCAGC	3 cut(s)	81, 139, 172
BstV2I	GAAGAC	1 cut(s)	424
BstX2I	RGATCY	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	17
BtsCI	GGATG	3 cut(s)	94, 266, 448
BveI	ACCTGC	1 cut(s)	179
Cac8I	GCNNGC	2 cut(s)	15, 328
Cfr13I	GGNCC	2 cut(s)	111, 486
CseI	GACGC	1 cut(s)	401
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	7 cut(s)	7, 17, 152, 309, 330, 339, 404
CviKI_1	RGCY	7 cut(s)	7, 17, 152, 309, 330, 339, 404
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	2 cut(s)	25, 413
DpnI	GATC	1 cut(s)	362
DpnII	GATC	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	111, 486
FaeI	CATG	1 cut(s)	149
FaiI	YATR	7 cut(s)	54, 147, 293, 373, 445, 481, 528
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	1 cut(s)	145
Fnu4HI	GCNGC	6 cut(s)	8, 11, 70, 73, 153, 186
FokI	GGATG	3 cut(s)	101, 253, 435
Fsp4HI	GCNGC	6 cut(s)	8, 11, 70, 73, 153, 186
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	6 cut(s)	8, 11, 70, 73, 153, 186
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	1 cut(s)	252
HgaI	GACGC	1 cut(s)	401
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	1 cut(s)	149
HincII	GTYRAC	2 cut(s)	196, 228
HindII	GTYRAC	2 cut(s)	196, 228
HinfI	GANTC	3 cut(s)	49, 197, 454
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	3 cut(s)	22, 196, 228
Hpy188I	TCNGA	4 cut(s)	115, 416, 453, 490
Hpy188III	TCNNGA	4 cut(s)	27, 46, 86, 389
Hpy8I	GTNNAC	3 cut(s)	22, 196, 228
Hpy99I	CGWCG	1 cut(s)	494
HpyAV	CCTTC	3 cut(s)	102, 393, 443
HpyCH4III	ACNGT	2 cut(s)	181, 466
HpyCH4V	TGCA	3 cut(s)	155, 188, 409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	336, 401, 480
HpyF3I	CTNAG	2 cut(s)	25, 413
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	360
LpnPI	CCDG	9 cut(s)	12, 71, 174, 207, 247, 265, 312, 443, 469
Lsp1109I	GCAGC	3 cut(s)	81, 139, 172
LweI	GCATC	2 cut(s)	251, 483
MaeI	CTAG	1 cut(s)	389
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	362
MboI	GATC	1 cut(s)	360
MboII	GAAGA	3 cut(s)	130, 133, 429
MfeI	CAATTG	1 cut(s)	57
MflI	RGATCY	1 cut(s)	360
MluCI	AATT	5 cut(s)	57, 164, 288, 346, 422
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	5 cut(s)	90, 123, 142, 282, 406
MseI	TTAA	1 cut(s)	425
MslI	CAYNNNNRTG	1 cut(s)	87
MspA1I	CMGCKG	2 cut(s)	72, 404
MspI	CCGG	1 cut(s)	252
MunI	CAATTG	1 cut(s)	57
MwoI	GCNNNNNNNGC	3 cut(s)	336, 401, 480
NdeII	GATC	1 cut(s)	360
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	1 cut(s)	362
NmuCI	GTSAC	1 cut(s)	211
PaqCI	CACCTGC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	49, 454
PkrI	GCNGC	6 cut(s)	9, 12, 71, 74, 154, 187
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	362
PspPI	GGNCC	2 cut(s)	111, 486
PstI	CTGCAG	2 cut(s)	157, 190
PsuI	RGATCY	1 cut(s)	360
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	425
SatI	GCNGC	6 cut(s)	8, 11, 70, 73, 153, 186
Sau3AI	GATC	1 cut(s)	360
Sau96I	GGNCC	2 cut(s)	111, 486
SchI	GAGTC	1 cut(s)	191
SetI	ASST	6 cut(s)	113, 193, 236, 372, 406, 501
SfaNI	GCATC	2 cut(s)	251, 483
SfcI	CTRYAG	2 cut(s)	153, 186
SinI	GGWCC	2 cut(s)	111, 486
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	5 cut(s)	57, 164, 288, 346, 422
SsiI	CCGC	2 cut(s)	11, 72
SspMI	CTAG	1 cut(s)	389
TaaI	ACNGT	2 cut(s)	181, 466
TaqI	TCGA	2 cut(s)	95, 106
TasI	AATT	5 cut(s)	57, 164, 288, 346, 422
TauI	GCSGC	2 cut(s)	13, 75
TfiI	GAWTC	2 cut(s)	49, 454
Tru1I	TTAA	1 cut(s)	425
Tru9I	TTAA	1 cut(s)	425
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	4 cut(s)	7, 69, 152, 185
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	114, 522
VpaK11BI	GGWCC	2 cut(s)	111, 486
XapI	RAATTY	1 cut(s)	164
XbaI	TCTAGA	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.