RLG00000017675

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010778
Physical Location & Seq
Reverse (-)
19709569 .. 19712137
2569 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017675

Sequence Viewer

Length: 885 bp
ATGCTACTAGCAAACCGTCTGCTATTCACTTCCATTTTCTTATCACCATCTTCTTCTTCTCCCTCTCTAAAACCCCAACCTCTCACCCTCACCTTCCCAAACTCAACCAATCCAAAACCCACCCGCCATGTCTCCTCAGCCTCGAAAACCACACCCATCTTGGAGAAAGACCGGTCCGTCCTGTTCGTCCCGCCCGGAGTCGACCCGGATGAGGTGACCCCGGACATGGTCCTACCGGGGTCCAACATCGTTATCGGACCCTACGCCGGCGACGCCAAGATTAAGGAGGTGGTGTTCGTCAAGAGCAGTAGTAGAGCTAAGGACTGCCCCAAACATGACCGGCCCGAATTCGCTATATTGGGCCGGTCCAATGTGGGCAAGTCCTCGCTTATCAATGCCTTGGTTAAGAAGAAGGATGTTGCTCTCACATCTAAGAAGCCAGGGAAGACTAAGTTGATCAATCATTTCTTGGTGAACAAAAGTTGGTACTTTGTGGATTTGCCTGGTTATGGGTTTGCTAAAGCTCCAGAAGCTGCTCGGATGGATTGGTCGGCATTCACTAAAGGTTTCTTTTTGAACAGAGATAATCTCGTTGCTGTTCTACTTCTTGTTGATGCTAGTGTTCCACCTCAGAGGATTGACCTAGACTGTGCGAATTGGCTTGGACGAAATAATATACCCATGACTTTTGTCTTCACAAAGTGTGACAAAATGAAAGGGAGCAAAGGTAAGAGGCCTGATGAGAACCTCAGGGATTTTAAGCAGTTCATCGCAGAAAACTACAAGCAGCATCCCCCATGGATCATGACTAGCAGTGTAACTGGTTTGGGCAGGGATGAACTTCTGCTTCACATGTCACAGCTTAGAAACTACTGGGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

295

Amino Acids

32.8

Weight (kDa)

9.69

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 117 - 234 2.2e-19 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22870
fragaria_vesca FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030
malus_domestica MD17G1236700.v1.1
prunus_persica Prupe.6G218100_v2.0.a1
pyrus_communis pycom02g15310 pycom15g26220 pycom17g23980
rosa_chinensis RchiOBHm_Chr2g0108521
rosa_laevigata RLG00000017675
rosa_roxburghii Rroxscaffold_2G00135060
rosa_rugosa Rorug02G0154000
rosa_samantha Rh2AG202900 Rh2BG215900 Rh2CG206900 Rh2DG210100
rosa_wichuraiana Rw2G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AccI GTMKAC 1 cut(s) 201
AciI CCGC 2 cut(s) 124, 191
AclWI GGATC 1 cut(s) 809
AcsI RAATTY 1 cut(s) 347
AcyI GRCGYC 1 cut(s) 273
AdeI CACNNNGTG 1 cut(s) 702
AfaI GTAC 1 cut(s) 488
AfiI CCNNNNNNNGG 4 cut(s) 211, 226, 266, 509
AflIII ACRYGT 1 cut(s) 852
AgeI ACCGGT 1 cut(s) 171
AgsI TTSAA 1 cut(s) 577
AjnI CCWGG 2 cut(s) 439, 502
AloI GAACNNNNNNTCC 2 cut(s) 278, 310
AluBI AGCT 4 cut(s) 317, 524, 533, 862
AluI AGCT 4 cut(s) 317, 524, 533, 862
Alw26I GTCTC 1 cut(s) 136
AlwI GGATC 1 cut(s) 809
AlwNI CAGNNNCTG 1 cut(s) 533
AoxI GGCC 3 cut(s) 341, 361, 734
ApeKI GCWGC 2 cut(s) 533, 787
ApoI RAATTY 1 cut(s) 347
AsiGI ACCGGT 1 cut(s) 171
AspS9I GGNCC 7 cut(s) 174, 229, 240, 257, 342, 361, 366
AsuC2I CCSGG 4 cut(s) 195, 206, 221, 237
AsuHPI GGTGA 5 cut(s) 36, 76, 82, 226, 484
AvaII GGWCC 5 cut(s) 174, 229, 240, 257, 366
AxyI CCTNAGG 1 cut(s) 749
BbsI GAAGAC 2 cut(s) 452, 685
BbvCI CCTCAGC 1 cut(s) 136
BbvI GCAGC 2 cut(s) 520, 799
BccI CCATC 3 cut(s) 55, 164, 535
BciT130I CCWGG 2 cut(s) 441, 504
BclI TGATCA 1 cut(s) 456
BcnI CCSGG 4 cut(s) 195, 206, 221, 237
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 4 cut(s) 8, 618, 644, 810
BisI GCNGC 2 cut(s) 534, 788
BlsI GCNGC 2 cut(s) 535, 789
Bme1390I CCNGG 6 cut(s) 195, 206, 221, 237, 441, 504
Bme18I GGWCC 5 cut(s) 174, 229, 240, 257, 366
BmgT120I GGNCC 7 cut(s) 174, 229, 240, 257, 342, 361, 366
BmiI GGNNCC 2 cut(s) 241, 259
BmrFI CCNGG 6 cut(s) 195, 206, 221, 237, 441, 504
BmrI ACTGGG 1 cut(s) 883
BmsI GCATC 2 cut(s) 604, 799
BmuI ACTGGG 1 cut(s) 883
BoxI GACNNNNGTC 1 cut(s) 689
BpiI GAAGAC 2 cut(s) 452, 685
BplI GAGNNNNNCTC 2 cut(s) 573, 605
BpmI CTGGAG 1 cut(s) 510
Bpu10I CCTNAGC 2 cut(s) 136, 318
BpuMI CCSGG 4 cut(s) 195, 206, 221, 237
BsaHI GRCGYC 1 cut(s) 273
BsaJI CCNNGG 5 cut(s) 219, 236, 399, 440, 797
BsaWI WCCGGW 1 cut(s) 171
BsaXI ACNNNNNCTCC 4 cut(s) 278, 308, 712, 742
Bsc4I CCNNNNNNNGG 4 cut(s) 211, 226, 266, 509
Bse118I RCCGGY 4 cut(s) 171, 266, 339, 363
Bse1I ACTGG 2 cut(s) 826, 878
Bse21I CCTNAGG 1 cut(s) 749
BseBI CCWGG 2 cut(s) 441, 504
BseDI CCNNGG 5 cut(s) 219, 236, 399, 440, 797
BseGI GGATG 5 cut(s) 214, 421, 546, 790, 841
BseLI CCNNNNNNNGG 4 cut(s) 211, 226, 266, 509
BseMII CTCAG 3 cut(s) 150, 644, 763
BseNI ACTGG 2 cut(s) 826, 878
BseRI GAGGAG 1 cut(s) 124
BseXI GCAGC 2 cut(s) 520, 799
BshFI GGCC 3 cut(s) 343, 363, 736
BshTI ACCGGT 1 cut(s) 171
BsiSI CCGG 8 cut(s) 172, 195, 206, 221, 236, 267, 340, 364
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 4 cut(s) 211, 226, 266, 509
BsmAI GTCTC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 554
BsnI GGCC 3 cut(s) 343, 363, 736
Bsp143I GATC 3 cut(s) 456, 801, 877
Bsp19I CCATGG 1 cut(s) 797
BspACI CCGC 2 cut(s) 124, 191
BspANI GGCC 3 cut(s) 343, 363, 736
BspCNI CTCAG 3 cut(s) 149, 643, 762
BspHI TCATGA 1 cut(s) 804
BspLI GGNNCC 2 cut(s) 241, 259
BspPI GGATC 1 cut(s) 809
BsrFI RCCGGY 4 cut(s) 171, 266, 339, 363
BsrI ACTGG 2 cut(s) 826, 878
BssAI RCCGGY 4 cut(s) 171, 266, 339, 363
BssECI CCNNGG 5 cut(s) 219, 236, 399, 440, 797
BssMI GATC 3 cut(s) 456, 801, 877
BssNI GRCGYC 1 cut(s) 273
BssT1I CCWWGG 2 cut(s) 399, 797
Bst2UI CCWGG 2 cut(s) 441, 504
Bst4CI ACNGT 2 cut(s) 17, 650
BstACI GRCGYC 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 7 cut(s) 136, 318, 432, 450, 630, 749, 863
BstDSI CCRYGG 1 cut(s) 797
BstEII GGTNACC 1 cut(s) 214
BstF5I GGATG 5 cut(s) 214, 421, 546, 790, 841
BstKTI GATC 3 cut(s) 459, 804, 880
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 3 cut(s) 456, 801, 877
BstMWI GCNNNNNNNGC 2 cut(s) 272, 530
BstNI CCWGG 2 cut(s) 441, 504
BstNSI RCATGY 1 cut(s) 856
BstPAI GACNNNNGTC 1 cut(s) 689
BstPI GGTNACC 1 cut(s) 214
BstSCI CCNGG 6 cut(s) 193, 204, 219, 235, 439, 502
BstV1I GCAGC 2 cut(s) 520, 799
BstV2I GAAGAC 2 cut(s) 452, 685
Bsu36I CCTNAGG 1 cut(s) 749
BsuRI GGCC 3 cut(s) 343, 363, 736
BtgI CCRYGG 1 cut(s) 797
BtgZI GCGATG 1 cut(s) 754
BtsCI GGATG 5 cut(s) 214, 421, 546, 790, 841
BtsI GCAGTG 1 cut(s) 820
BtsIMutI CAGTG 1 cut(s) 820
Cac8I GCNNGC 1 cut(s) 268
CaiI CAGNNNCTG 1 cut(s) 533
CciI TCATGA 1 cut(s) 804
Cfr10I RCCGGY 4 cut(s) 171, 266, 339, 363
Cfr13I GGNCC 7 cut(s) 174, 229, 240, 257, 342, 361, 366
CpoI CGGWCCG 1 cut(s) 174
CseI GACGC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 487
CspAI ACCGGT 1 cut(s) 171
CspI CGGWCCG 1 cut(s) 174
CviAII CATG 7 cut(s) 128, 226, 335, 682, 798, 805, 853
CviQI GTAC 1 cut(s) 487
DdeI CTNAG 7 cut(s) 136, 318, 432, 450, 630, 749, 863
DpnI GATC 3 cut(s) 458, 803, 879
DpnII GATC 3 cut(s) 456, 801, 877
DraIII CACNNNGTG 1 cut(s) 702
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
Eco130I CCWWGG 2 cut(s) 399, 797
Eco147I AGGCCT 1 cut(s) 736
Eco47I GGWCC 5 cut(s) 174, 229, 240, 257, 366
Eco81I CCTNAGG 1 cut(s) 749
Eco91I GGTNACC 1 cut(s) 214
EcoO65I GGTNACC 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 439, 502
EcoT14I CCWWGG 2 cut(s) 399, 797
ErhI CCWWGG 2 cut(s) 399, 797
FaeI CATG 7 cut(s) 131, 229, 338, 685, 801, 808, 856
FaqI GGGAC 1 cut(s) 173
FatI CATG 7 cut(s) 127, 225, 334, 681, 797, 804, 852
FauI CCCGC 2 cut(s) 131, 198
FbaI TGATCA 1 cut(s) 456
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 534, 788
FokI GGATG 5 cut(s) 221, 428, 553, 777, 848
Fsp4HI GCNGC 2 cut(s) 534, 788
FspBI CTAG 4 cut(s) 8, 618, 644, 810
GluI GCNGC 2 cut(s) 534, 788
GsuI CTGGAG 1 cut(s) 510
HaeIII GGCC 3 cut(s) 343, 363, 736
HapII CCGG 8 cut(s) 172, 195, 206, 221, 236, 267, 340, 364
HgaI GACGC 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 7 cut(s) 131, 229, 338, 685, 801, 808, 856
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 1 cut(s) 198
HpaII CCGG 8 cut(s) 172, 195, 206, 221, 236, 267, 340, 364
HphI GGTGA 5 cut(s) 36, 76, 82, 226, 484
Hpy166II GTNNAC 2 cut(s) 202, 475
Hpy188I TCNGA 3 cut(s) 257, 540, 633
Hpy188III TCNNGA 3 cut(s) 301, 527, 805
Hpy8I GTNNAC 2 cut(s) 202, 475
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 2 cut(s) 103, 406
HpyCH4III ACNGT 2 cut(s) 17, 650
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 530
HpyF3I CTNAG 7 cut(s) 136, 318, 432, 450, 630, 749, 863
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 7 cut(s) 131, 229, 338, 685, 801, 808, 856
KroI GCCGGC 1 cut(s) 266
KroNI GCCGGC 1 cut(s) 268
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 3 cut(s) 456, 801, 877
LmnI GCTCC 2 cut(s) 529, 720
Lsp1109I GCAGC 2 cut(s) 520, 799
LweI GCATC 2 cut(s) 604, 799
MaeI CTAG 4 cut(s) 8, 618, 644, 810
MaeIII GTNAC 4 cut(s) 214, 704, 817, 855
MalI GATC 3 cut(s) 458, 803, 879
MboI GATC 3 cut(s) 456, 801, 877
MboII GAAGA 6 cut(s) 42, 45, 48, 421, 457, 685
MluCI AATT 2 cut(s) 347, 655
MlyI GAGTC 1 cut(s) 207
MmeI TCCRAC 1 cut(s) 267
MreI CGCCGGCG 1 cut(s) 266
MroNI GCCGGC 1 cut(s) 266
MseI TTAA 3 cut(s) 282, 405, 759
MspI CCGG 8 cut(s) 172, 195, 206, 221, 236, 267, 340, 364
MspR9I CCNGG 6 cut(s) 195, 206, 221, 237, 441, 504
Mva1269I GAATGC 1 cut(s) 554
MvaI CCWGG 2 cut(s) 441, 504
MwoI GCNNNNNNNGC 2 cut(s) 272, 530
NaeI GCCGGC 1 cut(s) 268
NciI CCSGG 4 cut(s) 195, 206, 221, 237
NcoI CCATGG 1 cut(s) 797
NdeII GATC 3 cut(s) 456, 801, 877
NgoMIV GCCGGC 1 cut(s) 266
NlaIII CATG 7 cut(s) 131, 229, 338, 685, 801, 808, 856
NlaIV GGNNCC 2 cut(s) 241, 259
NmuCI GTSAC 3 cut(s) 214, 704, 855
NspI RCATGY 1 cut(s) 856
PagI TCATGA 1 cut(s) 804
PceI AGGCCT 1 cut(s) 736
PciI ACATGT 1 cut(s) 852
PctI GAATGC 1 cut(s) 554
PdiI GCCGGC 1 cut(s) 268
PflFI GACNNNGTC 1 cut(s) 227
PinAI ACCGGT 1 cut(s) 171
PkrI GCNGC 2 cut(s) 535, 789
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PscI ACATGT 1 cut(s) 852
PshAI GACNNNNGTC 1 cut(s) 689
Psp6I CCWGG 2 cut(s) 439, 502
PspEI GGTNACC 1 cut(s) 214
PspGI CCWGG 2 cut(s) 439, 502
PspN4I GGNNCC 2 cut(s) 241, 259
PspPI GGNCC 7 cut(s) 174, 229, 240, 257, 342, 361, 366
PstNI CAGNNNCTG 1 cut(s) 533
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 1 cut(s) 488
RsaNI GTAC 1 cut(s) 487
Rsr2I CGGWCCG 1 cut(s) 174
RsrII CGGWCCG 1 cut(s) 174
SalI GTCGAC 1 cut(s) 200
SaqAI TTAA 3 cut(s) 282, 405, 759
SatI GCNGC 2 cut(s) 534, 788
Sau3AI GATC 3 cut(s) 456, 801, 877
Sau96I GGNCC 7 cut(s) 174, 229, 240, 257, 342, 361, 366
SchI GAGTC 1 cut(s) 207
ScrFI CCNGG 6 cut(s) 195, 206, 221, 237, 441, 504
SfaNI GCATC 2 cut(s) 604, 799
SgrAI CRCCGGYG 1 cut(s) 266
SinI GGWCC 5 cut(s) 174, 229, 240, 257, 366
Sse9I AATT 2 cut(s) 347, 655
SseBI AGGCCT 1 cut(s) 736
SsiI CCGC 2 cut(s) 124, 191
SspMI CTAG 4 cut(s) 8, 618, 644, 810
StuI AGGCCT 1 cut(s) 736
StyD4I CCNGG 6 cut(s) 193, 204, 219, 235, 439, 502
StyI CCWWGG 2 cut(s) 399, 797
TaaI ACNGT 2 cut(s) 17, 650
TaqI TCGA 2 cut(s) 143, 201
TasI AATT 2 cut(s) 347, 655
Tru1I TTAA 3 cut(s) 282, 405, 759
Tru9I TTAA 3 cut(s) 282, 405, 759
TscAI CASTG 1 cut(s) 820
TseFI GTSAC 3 cut(s) 214, 704, 855
TseI GCWGC 2 cut(s) 533, 787
Tsp45I GTSAC 3 cut(s) 214, 704, 855
TspDTI ATGAA 3 cut(s) 728, 757, 852
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 1 cut(s) 820
Tth111I GACNNNGTC 1 cut(s) 227
VpaK11BI GGWCC 5 cut(s) 174, 229, 240, 257, 366
XapI RAATTY 1 cut(s) 347
XceI RCATGY 1 cut(s) 856
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 4 cut(s) 8, 618, 644, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.