Rh2CG206900

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010778
Physical Location & Seq
Reverse (-)
20146444 .. 20150325
3882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG206900.1

Sequence Viewer

Length: 726 bp
ATGGAGAAGGACCGGTCCGTCCTGTTCGTCCCGCCCGGTGTCGACCCGGATGAGGTGACCCCGGACATGGTCCTACCCGGCTCCAACATCGTTATCGGACCCTACGCCGGCGACGCCAAGATTAAGGAGGTGGTGTTTGTCAAGAGCAGTAGTAGAGCTAAGGACTGCCCCAAACATGACCGGCCCGAATTCGCTATATTGGGCCGGTCCAATGTGGGCAAGTCCTCGCTTATCAATGCCTTGGTTAAGAAGAAGGATGTTGCTCTCACGTCTAAGAAGCCAGGGAAGACTAAGTTGATCAATCATTTCTTGGTGAACAAAAGTTGGTACTTTGTGGATTTGCCTGGTTATGGGTTTGCTAAAGCTCCAGAAGCTGCTCGGATGGATTGGTCGGCATTCACTAAAGGTTTCTTCTTGAACAGAGATAATCTCGTTGCTGTTCTACTTCTTGTTGATGCTAGTGTTCCACCTCAGAGGATTGACCTAGACTGTGCCAATTGGCTTGGACGAAATAATATACCCATGACTTTTGTCTTCACAAAGTGTGACAAAATGAAAGGGGGCAAAGGTAAGAGGCCTGATGAGAACCTCAGGGATTTTAAGCAGTTCATCGCAGAAAACTACAAGCAGCATCCCCCATGGATCATGACTAGCAGTGTAACTGGTTTGGGCAGGGATGAACTTCTGCTTCACATGTCACAGCTTAGAAACTACTGGGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

241

Amino Acids

27.1

Weight (kDa)

9.4

Isoelectric Point (pI)

33.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 64 - 181 1.3e-19 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22870
fragaria_vesca FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030
malus_domestica MD17G1236700.v1.1
prunus_persica Prupe.6G218100_v2.0.a1
pyrus_communis pycom02g15310 pycom15g26220 pycom17g23980
rosa_chinensis RchiOBHm_Chr2g0108521
rosa_laevigata RLG00000017675
rosa_roxburghii Rroxscaffold_2G00135060
rosa_rugosa Rorug02G0154000
rosa_samantha Rh2AG202900 Rh2BG215900 Rh2CG206900 Rh2DG210100
rosa_wichuraiana Rw2G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 42
AciI CCGC 1 cut(s) 32
AclWI GGATC 1 cut(s) 650
AcsI RAATTY 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 114
AdeI CACNNNGTG 1 cut(s) 543
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 4 cut(s) 52, 67, 107, 350
AflIII ACRYGT 1 cut(s) 693
AgeI ACCGGT 1 cut(s) 12
AgsI TTSAA 1 cut(s) 418
AjiI CACGTC 1 cut(s) 270
AjnI CCWGG 2 cut(s) 280, 343
AluBI AGCT 4 cut(s) 158, 365, 374, 703
AluI AGCT 4 cut(s) 158, 365, 374, 703
AlwI GGATC 1 cut(s) 650
AlwNI CAGNNNCTG 1 cut(s) 374
AoxI GGCC 3 cut(s) 182, 202, 575
ApeKI GCWGC 2 cut(s) 374, 628
ApoI RAATTY 1 cut(s) 188
AsiGI ACCGGT 1 cut(s) 12
AspS9I GGNCC 7 cut(s) 10, 15, 70, 98, 183, 202, 207
AsuC2I CCSGG 4 cut(s) 36, 47, 62, 78
AsuHPI GGTGA 2 cut(s) 67, 325
AvaII GGWCC 5 cut(s) 10, 15, 70, 98, 207
AxyI CCTNAGG 1 cut(s) 590
BbsI GAAGAC 2 cut(s) 293, 526
BbvI GCAGC 2 cut(s) 361, 640
BccI CCATC 1 cut(s) 376
BciT130I CCWGG 2 cut(s) 282, 345
BclI TGATCA 1 cut(s) 297
BcnI CCSGG 4 cut(s) 36, 47, 62, 78
BfaI CTAG 3 cut(s) 459, 485, 651
BisI GCNGC 2 cut(s) 375, 629
BlsI GCNGC 2 cut(s) 376, 630
Bme1390I CCNGG 6 cut(s) 36, 47, 62, 78, 282, 345
Bme18I GGWCC 5 cut(s) 10, 15, 70, 98, 207
BmgBI CACGTC 1 cut(s) 270
BmgT120I GGNCC 7 cut(s) 10, 15, 70, 98, 183, 202, 207
BmiI GGNNCC 2 cut(s) 82, 100
BmrFI CCNGG 6 cut(s) 36, 47, 62, 78, 282, 345
BmrI ACTGGG 1 cut(s) 724
BmsI GCATC 2 cut(s) 445, 640
BmuI ACTGGG 1 cut(s) 724
BoxI GACNNNNGTC 1 cut(s) 530
BpiI GAAGAC 2 cut(s) 293, 526
BplI GAGNNNNNCTC 2 cut(s) 414, 446
BpmI CTGGAG 1 cut(s) 351
Bpu10I CCTNAGC 1 cut(s) 159
BpuMI CCSGG 4 cut(s) 36, 47, 62, 78
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 4 cut(s) 60, 240, 281, 638
BsaWI WCCGGW 1 cut(s) 12
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 67, 107, 350
Bse118I RCCGGY 4 cut(s) 12, 107, 180, 204
Bse1I ACTGG 2 cut(s) 667, 719
Bse21I CCTNAGG 1 cut(s) 590
BseBI CCWGG 2 cut(s) 282, 345
BseDI CCNNGG 4 cut(s) 60, 240, 281, 638
BseGI GGATG 5 cut(s) 55, 262, 387, 631, 682
BseLI CCNNNNNNNGG 4 cut(s) 52, 67, 107, 350
BseMII CTCAG 2 cut(s) 485, 604
BseNI ACTGG 2 cut(s) 667, 719
BseXI GCAGC 2 cut(s) 361, 640
BshFI GGCC 3 cut(s) 184, 204, 577
BshTI ACCGGT 1 cut(s) 12
BsiSI CCGG 8 cut(s) 13, 36, 47, 62, 78, 108, 181, 205
BslFI GGGAC 1 cut(s) 14
BslI CCNNNNNNNGG 4 cut(s) 52, 67, 107, 350
BsmFI GGGAC 1 cut(s) 14
BsmI GAATGC 1 cut(s) 395
BsnI GGCC 3 cut(s) 184, 204, 577
Bsp143I GATC 3 cut(s) 297, 642, 718
Bsp19I CCATGG 1 cut(s) 638
BspACI CCGC 1 cut(s) 32
BspANI GGCC 3 cut(s) 184, 204, 577
BspCNI CTCAG 2 cut(s) 484, 603
BspHI TCATGA 1 cut(s) 645
BspLI GGNNCC 2 cut(s) 82, 100
BspPI GGATC 1 cut(s) 650
BsrFI RCCGGY 4 cut(s) 12, 107, 180, 204
BsrI ACTGG 2 cut(s) 667, 719
BssAI RCCGGY 4 cut(s) 12, 107, 180, 204
BssECI CCNNGG 4 cut(s) 60, 240, 281, 638
BssMI GATC 3 cut(s) 297, 642, 718
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 2 cut(s) 240, 638
Bst2UI CCWGG 2 cut(s) 282, 345
Bst4CI ACNGT 1 cut(s) 491
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 6 cut(s) 159, 273, 291, 471, 590, 704
BstDSI CCRYGG 1 cut(s) 638
BstEII GGTNACC 1 cut(s) 55
BstF5I GGATG 5 cut(s) 55, 262, 387, 631, 682
BstKTI GATC 3 cut(s) 300, 645, 721
BstMBI GATC 3 cut(s) 297, 642, 718
BstMWI GCNNNNNNNGC 2 cut(s) 113, 371
BstNI CCWGG 2 cut(s) 282, 345
BstNSI RCATGY 1 cut(s) 697
BstPAI GACNNNNGTC 1 cut(s) 530
BstPI GGTNACC 1 cut(s) 55
BstSCI CCNGG 6 cut(s) 34, 45, 60, 76, 280, 343
BstV1I GCAGC 2 cut(s) 361, 640
BstV2I GAAGAC 2 cut(s) 293, 526
Bsu36I CCTNAGG 1 cut(s) 590
BsuRI GGCC 3 cut(s) 184, 204, 577
BtgI CCRYGG 1 cut(s) 638
BtgZI GCGATG 1 cut(s) 595
BtrI CACGTC 1 cut(s) 270
BtsCI GGATG 5 cut(s) 55, 262, 387, 631, 682
BtsI GCAGTG 1 cut(s) 661
BtsIMutI CAGTG 1 cut(s) 661
Cac8I GCNNGC 1 cut(s) 109
CaiI CAGNNNCTG 1 cut(s) 374
CciI TCATGA 1 cut(s) 645
Cfr10I RCCGGY 4 cut(s) 12, 107, 180, 204
Cfr13I GGNCC 7 cut(s) 10, 15, 70, 98, 183, 202, 207
CpoI CGGWCCG 1 cut(s) 15
CseI GACGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 328
CspAI ACCGGT 1 cut(s) 12
CspI CGGWCCG 1 cut(s) 15
CviAII CATG 6 cut(s) 67, 176, 523, 639, 646, 694
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 6 cut(s) 159, 273, 291, 471, 590, 704
DpnI GATC 3 cut(s) 299, 644, 720
DpnII GATC 3 cut(s) 297, 642, 718
DraIII CACNNNGTG 1 cut(s) 543
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
Eco130I CCWWGG 2 cut(s) 240, 638
Eco147I AGGCCT 1 cut(s) 577
Eco47I GGWCC 5 cut(s) 10, 15, 70, 98, 207
Eco81I CCTNAGG 1 cut(s) 590
Eco91I GGTNACC 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 55
EcoRI GAATTC 1 cut(s) 188
EcoRII CCWGG 2 cut(s) 280, 343
EcoT14I CCWWGG 2 cut(s) 240, 638
ErhI CCWWGG 2 cut(s) 240, 638
FaeI CATG 6 cut(s) 70, 179, 526, 642, 649, 697
FaiI YATR 9 cut(s) 68, 177, 197, 351, 518, 524, 640, 647, 695
FaqI GGGAC 1 cut(s) 14
FatI CATG 6 cut(s) 66, 175, 522, 638, 645, 693
FauI CCCGC 1 cut(s) 39
FbaI TGATCA 1 cut(s) 297
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 375, 629
FokI GGATG 5 cut(s) 62, 269, 394, 618, 689
Fsp4HI GCNGC 2 cut(s) 375, 629
FspBI CTAG 3 cut(s) 459, 485, 651
GluI GCNGC 2 cut(s) 375, 629
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 3 cut(s) 184, 204, 577
HapII CCGG 8 cut(s) 13, 36, 47, 62, 78, 108, 181, 205
HgaI GACGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 6 cut(s) 70, 179, 526, 642, 649, 697
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HpaII CCGG 8 cut(s) 13, 36, 47, 62, 78, 108, 181, 205
HphI GGTGA 2 cut(s) 67, 325
Hpy166II GTNNAC 2 cut(s) 43, 316
Hpy188I TCNGA 3 cut(s) 98, 381, 474
Hpy188III TCNNGA 4 cut(s) 142, 368, 415, 646
Hpy8I GTNNAC 2 cut(s) 43, 316
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4IV ACGT 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 371
HpyF3I CTNAG 6 cut(s) 159, 273, 291, 471, 590, 704
HpySE526I ACGT 1 cut(s) 269
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 6 cut(s) 70, 179, 526, 642, 649, 697
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
Ksp22I TGATCA 1 cut(s) 297
Kzo9I GATC 3 cut(s) 297, 642, 718
LmnI GCTCC 2 cut(s) 86, 370
Lsp1109I GCAGC 2 cut(s) 361, 640
LweI GCATC 2 cut(s) 445, 640
MaeI CTAG 3 cut(s) 459, 485, 651
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 4 cut(s) 55, 545, 658, 696
MalI GATC 3 cut(s) 299, 644, 720
MboI GATC 3 cut(s) 297, 642, 718
MboII GAAGA 4 cut(s) 262, 298, 403, 526
MfeI CAATTG 1 cut(s) 496
MluCI AATT 2 cut(s) 188, 496
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 7 cut(s) 46, 121, 235, 468, 480, 567, 599
MreI CGCCGGCG 1 cut(s) 107
MroNI GCCGGC 1 cut(s) 107
MseI TTAA 3 cut(s) 123, 246, 600
MspI CCGG 8 cut(s) 13, 36, 47, 62, 78, 108, 181, 205
MspR9I CCNGG 6 cut(s) 36, 47, 62, 78, 282, 345
MunI CAATTG 1 cut(s) 496
Mva1269I GAATGC 1 cut(s) 395
MvaI CCWGG 2 cut(s) 282, 345
MwoI GCNNNNNNNGC 2 cut(s) 113, 371
NaeI GCCGGC 1 cut(s) 109
NciI CCSGG 4 cut(s) 36, 47, 62, 78
NcoI CCATGG 1 cut(s) 638
NdeII GATC 3 cut(s) 297, 642, 718
NgoMIV GCCGGC 1 cut(s) 107
NlaIII CATG 6 cut(s) 70, 179, 526, 642, 649, 697
NlaIV GGNNCC 2 cut(s) 82, 100
NmuCI GTSAC 3 cut(s) 55, 545, 696
NspI RCATGY 1 cut(s) 697
PagI TCATGA 1 cut(s) 645
PceI AGGCCT 1 cut(s) 577
PciI ACATGT 1 cut(s) 693
PctI GAATGC 1 cut(s) 395
PdiI GCCGGC 1 cut(s) 109
PflFI GACNNNGTC 1 cut(s) 68
PinAI ACCGGT 1 cut(s) 12
PkrI GCNGC 2 cut(s) 376, 630
PscI ACATGT 1 cut(s) 693
PshAI GACNNNNGTC 1 cut(s) 530
Psp6I CCWGG 2 cut(s) 280, 343
PspEI GGTNACC 1 cut(s) 55
PspGI CCWGG 2 cut(s) 280, 343
PspN4I GGNNCC 2 cut(s) 82, 100
PspPI GGNCC 7 cut(s) 10, 15, 70, 98, 183, 202, 207
PstNI CAGNNNCTG 1 cut(s) 374
PsyI GACNNNGTC 1 cut(s) 68
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
Rsr2I CGGWCCG 1 cut(s) 15
RsrII CGGWCCG 1 cut(s) 15
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 3 cut(s) 123, 246, 600
SatI GCNGC 2 cut(s) 375, 629
Sau3AI GATC 3 cut(s) 297, 642, 718
Sau96I GGNCC 7 cut(s) 10, 15, 70, 98, 183, 202, 207
ScrFI CCNGG 6 cut(s) 36, 47, 62, 78, 282, 345
SfaNI GCATC 2 cut(s) 445, 640
SgrAI CRCCGGYG 1 cut(s) 107
SinI GGWCC 5 cut(s) 10, 15, 70, 98, 207
Sse9I AATT 2 cut(s) 188, 496
SseBI AGGCCT 1 cut(s) 577
SsiI CCGC 1 cut(s) 32
SspMI CTAG 3 cut(s) 459, 485, 651
StuI AGGCCT 1 cut(s) 577
StyD4I CCNGG 6 cut(s) 34, 45, 60, 76, 280, 343
StyI CCWWGG 2 cut(s) 240, 638
TaaI ACNGT 1 cut(s) 491
TaiI ACGT 1 cut(s) 272
TaqI TCGA 1 cut(s) 42
TasI AATT 2 cut(s) 188, 496
Tru1I TTAA 3 cut(s) 123, 246, 600
Tru9I TTAA 3 cut(s) 123, 246, 600
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 3 cut(s) 55, 545, 696
TseI GCWGC 2 cut(s) 374, 628
Tsp45I GTSAC 3 cut(s) 55, 545, 696
TspDTI ATGAA 3 cut(s) 569, 598, 693
TspGWI ACGGA 1 cut(s) 7
TspRI CASTG 1 cut(s) 661
Tth111I GACNNNGTC 1 cut(s) 68
VpaK11BI GGWCC 5 cut(s) 10, 15, 70, 98, 207
XapI RAATTY 1 cut(s) 188
XceI RCATGY 1 cut(s) 697
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 3 cut(s) 459, 485, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.