RchiOBHm_Chr2g0108521

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010778
Physical Location & Seq
Reverse (-)
19901873 .. 19906312
4440 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48242

Sequence Viewer

Length: 921 bp
ATGTGGGTCTTTCCATTTTCCCAGGGAGCCCAAACAATGCTACTAGCACACCGTCTGCTATTCACTTCCATTTTCTTATCACCGTCTTCTTCTTCTCCCTCTCTAAAACCCCAACCTCTCACCCTCACCTTCTCAAACCCAACCCATGCAAAACCCACCCGCCATGTCTCCCCAGCCTCGAAAACCACACCCATCATGGAGAAGGACCGGTCCGTCCTGTTCGTCCCGCCCGGTGTCGACCCGGATGAGGTGACCCCGGACATGGTCCTACCCGGCTCCAACATCGTTATCGGACCCTACGCCGGCGACGCCAAGATTAAGGAGGTGGTGTTTGTCAAGAGCAGTAGTAGAGCTAAGGACTGCCCCAAACATGACCGGCCCGAATTCGCTATATTGGGCCGGTCCAATGTGGGCAAGTCCTCGCTTATCAATGCCTTGGTTAAGAAGAAGGATGTTGCTCTCACGTCTAAGAAGCCAGGGAAGACTAAGTTGATCAATCATTTCTTGGTGAACAAAAGTTGGTACTTTGTGGATTTGCCTGGTTATGGGTTTGCTAAAGCTCCAGAAGCTGCTCGGATGGATTGGTCGGCATTCACTAAAGGTTTCTTCTTGAACAGAGATAATCTCGTTGCTGTTCTACTTCTTGTTGATGCTAGTGTTCCACCTCAGAGGATTGACCTAGACTGTGCCAATTGGCTTGGACGAAATAATATACCCATGACTTTTGTCTTCACAAAGTGTGACAAAATGAAAGGGGGCAAAGGTAAGAGGCCTGATGAGAACCTCAGGGATTTTAAGCAGTTCATCGCAGAAAACTACAAGCAGCATCCCCCATGGATCATGACTAGCAGTGTAACTGGTTTGGGCAGGGATGAACTTCTGCTTCACATGTCACAGCTTAGAAACTACTGGGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

306

Amino Acids

34.2

Weight (kDa)

9.69

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 129 - 246 2.4e-19 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22870
fragaria_vesca FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030
malus_domestica MD17G1236700.v1.1
prunus_persica Prupe.6G218100_v2.0.a1
pyrus_communis pycom02g15310 pycom15g26220 pycom17g23980
rosa_chinensis RchiOBHm_Chr2g0108521
rosa_laevigata RLG00000017675
rosa_roxburghii Rroxscaffold_2G00135060
rosa_rugosa Rorug02G0154000
rosa_samantha Rh2AG202900 Rh2BG215900 Rh2CG206900 Rh2DG210100
rosa_wichuraiana Rw2G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AccI GTMKAC 1 cut(s) 237
AciI CCGC 2 cut(s) 160, 227
AclWI GGATC 1 cut(s) 845
AcsI RAATTY 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 309
AdeI CACNNNGTG 1 cut(s) 738
AfaI GTAC 1 cut(s) 524
AfiI CCNNNNNNNGG 4 cut(s) 247, 262, 302, 545
AflIII ACRYGT 1 cut(s) 888
AgeI ACCGGT 1 cut(s) 207
AgsI TTSAA 1 cut(s) 613
AjiI CACGTC 1 cut(s) 465
AjnI CCWGG 3 cut(s) 21, 475, 538
AluBI AGCT 4 cut(s) 353, 560, 569, 898
AluI AGCT 4 cut(s) 353, 560, 569, 898
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 845
AlwNI CAGNNNCTG 1 cut(s) 569
AoxI GGCC 3 cut(s) 377, 397, 770
ApeKI GCWGC 2 cut(s) 569, 823
ApoI RAATTY 1 cut(s) 383
AsiGI ACCGGT 1 cut(s) 207
AspS9I GGNCC 7 cut(s) 205, 210, 265, 293, 378, 397, 402
AsuC2I CCSGG 4 cut(s) 231, 242, 257, 273
AsuHPI GGTGA 5 cut(s) 72, 112, 118, 262, 520
AvaII GGWCC 5 cut(s) 205, 210, 265, 293, 402
AxyI CCTNAGG 1 cut(s) 785
BanII GRGCYC 1 cut(s) 31
BbsI GAAGAC 3 cut(s) 78, 488, 721
BbvI GCAGC 2 cut(s) 556, 835
BccI CCATC 2 cut(s) 200, 571
BciT130I CCWGG 3 cut(s) 23, 477, 540
BclI TGATCA 1 cut(s) 492
BcnI CCSGG 4 cut(s) 231, 242, 257, 273
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 4 cut(s) 44, 654, 680, 846
BisI GCNGC 2 cut(s) 570, 824
BlsI GCNGC 2 cut(s) 571, 825
Bme1390I CCNGG 7 cut(s) 23, 231, 242, 257, 273, 477, 540
Bme18I GGWCC 5 cut(s) 205, 210, 265, 293, 402
BmgBI CACGTC 1 cut(s) 465
BmgT120I GGNCC 7 cut(s) 205, 210, 265, 293, 378, 397, 402
BmiI GGNNCC 3 cut(s) 28, 277, 295
BmrFI CCNGG 7 cut(s) 23, 231, 242, 257, 273, 477, 540
BmrI ACTGGG 1 cut(s) 919
BmsI GCATC 2 cut(s) 640, 835
BmuI ACTGGG 1 cut(s) 919
BoxI GACNNNNGTC 1 cut(s) 725
BpiI GAAGAC 3 cut(s) 78, 488, 721
BplI GAGNNNNNCTC 2 cut(s) 609, 641
BpmI CTGGAG 1 cut(s) 546
Bpu10I CCTNAGC 1 cut(s) 354
BpuMI CCSGG 4 cut(s) 231, 242, 257, 273
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 6 cut(s) 21, 22, 255, 435, 476, 833
BsaWI WCCGGW 1 cut(s) 207
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 4 cut(s) 247, 262, 302, 545
Bse118I RCCGGY 4 cut(s) 207, 302, 375, 399
Bse1I ACTGG 2 cut(s) 862, 914
Bse21I CCTNAGG 1 cut(s) 785
BseBI CCWGG 3 cut(s) 23, 477, 540
BseDI CCNNGG 6 cut(s) 21, 22, 255, 435, 476, 833
BseGI GGATG 5 cut(s) 250, 457, 582, 826, 877
BseLI CCNNNNNNNGG 4 cut(s) 247, 262, 302, 545
BseMII CTCAG 2 cut(s) 680, 799
BseNI ACTGG 2 cut(s) 862, 914
BseXI GCAGC 2 cut(s) 556, 835
BseYI CCCAGC 1 cut(s) 172
BshFI GGCC 3 cut(s) 379, 399, 772
BshTI ACCGGT 1 cut(s) 207
BsiSI CCGG 8 cut(s) 208, 231, 242, 257, 273, 303, 376, 400
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 4 cut(s) 247, 262, 302, 545
BsmAI GTCTC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 209
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 3 cut(s) 379, 399, 772
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 3 cut(s) 492, 837, 913
Bsp19I CCATGG 1 cut(s) 833
BspACI CCGC 2 cut(s) 160, 227
BspANI GGCC 3 cut(s) 379, 399, 772
BspCNI CTCAG 2 cut(s) 679, 798
BspHI TCATGA 1 cut(s) 840
BspLI GGNNCC 3 cut(s) 28, 277, 295
BspPI GGATC 1 cut(s) 845
BsrFI RCCGGY 4 cut(s) 207, 302, 375, 399
BsrI ACTGG 2 cut(s) 862, 914
BssAI RCCGGY 4 cut(s) 207, 302, 375, 399
BssECI CCNNGG 6 cut(s) 21, 22, 255, 435, 476, 833
BssMI GATC 3 cut(s) 492, 837, 913
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 2 cut(s) 435, 833
Bst2UI CCWGG 3 cut(s) 23, 477, 540
Bst4CI ACNGT 3 cut(s) 53, 84, 686
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 6 cut(s) 354, 468, 486, 666, 785, 899
BstDSI CCRYGG 1 cut(s) 833
BstEII GGTNACC 1 cut(s) 250
BstF5I GGATG 5 cut(s) 250, 457, 582, 826, 877
BstKTI GATC 3 cut(s) 495, 840, 916
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 3 cut(s) 492, 837, 913
BstMWI GCNNNNNNNGC 2 cut(s) 308, 566
BstNI CCWGG 3 cut(s) 23, 477, 540
BstNSI RCATGY 1 cut(s) 892
BstPAI GACNNNNGTC 1 cut(s) 725
BstPI GGTNACC 1 cut(s) 250
BstSCI CCNGG 7 cut(s) 21, 229, 240, 255, 271, 475, 538
BstV1I GCAGC 2 cut(s) 556, 835
BstV2I GAAGAC 3 cut(s) 78, 488, 721
Bsu36I CCTNAGG 1 cut(s) 785
BsuRI GGCC 3 cut(s) 379, 399, 772
BtgI CCRYGG 1 cut(s) 833
BtgZI GCGATG 1 cut(s) 790
BtrI CACGTC 1 cut(s) 465
BtsCI GGATG 5 cut(s) 250, 457, 582, 826, 877
BtsI GCAGTG 1 cut(s) 856
BtsIMutI CAGTG 1 cut(s) 856
Cac8I GCNNGC 1 cut(s) 304
CaiI CAGNNNCTG 1 cut(s) 569
CciI TCATGA 1 cut(s) 840
Cfr10I RCCGGY 4 cut(s) 207, 302, 375, 399
Cfr13I GGNCC 7 cut(s) 205, 210, 265, 293, 378, 397, 402
CpoI CGGWCCG 1 cut(s) 210
CseI GACGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 523
CspAI ACCGGT 1 cut(s) 207
CspI CGGWCCG 1 cut(s) 210
CviAII CATG 9 cut(s) 146, 164, 196, 262, 371, 718, 834, 841, 889
CviQI GTAC 1 cut(s) 523
DdeI CTNAG 6 cut(s) 354, 468, 486, 666, 785, 899
DpnI GATC 3 cut(s) 494, 839, 915
DpnII GATC 3 cut(s) 492, 837, 913
DraIII CACNNNGTG 1 cut(s) 738
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
Eco130I CCWWGG 2 cut(s) 435, 833
Eco147I AGGCCT 1 cut(s) 772
Eco24I GRGCYC 1 cut(s) 31
Eco47I GGWCC 5 cut(s) 205, 210, 265, 293, 402
Eco81I CCTNAGG 1 cut(s) 785
Eco91I GGTNACC 1 cut(s) 250
EcoO65I GGTNACC 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 383
EcoRII CCWGG 3 cut(s) 21, 475, 538
EcoT14I CCWWGG 2 cut(s) 435, 833
EcoT38I GRGCYC 1 cut(s) 31
ErhI CCWWGG 2 cut(s) 435, 833
FaeI CATG 9 cut(s) 149, 167, 199, 265, 374, 721, 837, 844, 892
FaqI GGGAC 1 cut(s) 209
FatI CATG 9 cut(s) 145, 163, 195, 261, 370, 717, 833, 840, 888
FauI CCCGC 2 cut(s) 167, 234
FbaI TGATCA 1 cut(s) 492
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 570, 824
FokI GGATG 5 cut(s) 257, 464, 589, 813, 884
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 2 cut(s) 570, 824
FspBI CTAG 4 cut(s) 44, 654, 680, 846
GluI GCNGC 2 cut(s) 570, 824
GsaI CCCAGC 1 cut(s) 176
GsuI CTGGAG 1 cut(s) 546
HaeIII GGCC 3 cut(s) 379, 399, 772
HapII CCGG 8 cut(s) 208, 231, 242, 257, 273, 303, 376, 400
HgaI GACGC 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 9 cut(s) 149, 167, 199, 265, 374, 721, 837, 844, 892
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HpaII CCGG 8 cut(s) 208, 231, 242, 257, 273, 303, 376, 400
HphI GGTGA 5 cut(s) 72, 112, 118, 262, 520
Hpy166II GTNNAC 2 cut(s) 238, 511
Hpy188I TCNGA 3 cut(s) 293, 576, 669
Hpy188III TCNNGA 4 cut(s) 337, 563, 610, 841
Hpy8I GTNNAC 2 cut(s) 238, 511
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 3 cut(s) 139, 196, 442
HpyCH4III ACNGT 3 cut(s) 53, 84, 686
HpyCH4IV ACGT 1 cut(s) 464
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 566
HpyF3I CTNAG 6 cut(s) 354, 468, 486, 666, 785, 899
HpySE526I ACGT 1 cut(s) 464
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 9 cut(s) 149, 167, 199, 265, 374, 721, 837, 844, 892
KroI GCCGGC 1 cut(s) 302
KroNI GCCGGC 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 3 cut(s) 492, 837, 913
LmnI GCTCC 3 cut(s) 26, 281, 565
Lsp1109I GCAGC 2 cut(s) 556, 835
LweI GCATC 2 cut(s) 640, 835
MaeI CTAG 4 cut(s) 44, 654, 680, 846
MaeII ACGT 1 cut(s) 464
MaeIII GTNAC 4 cut(s) 250, 740, 853, 891
MalI GATC 3 cut(s) 494, 839, 915
MboI GATC 3 cut(s) 492, 837, 913
MboII GAAGA 7 cut(s) 78, 81, 84, 457, 493, 598, 721
MfeI CAATTG 1 cut(s) 691
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 2 cut(s) 383, 691
MmeI TCCRAC 1 cut(s) 303
MreI CGCCGGCG 1 cut(s) 302
MroNI GCCGGC 1 cut(s) 302
MseI TTAA 3 cut(s) 318, 441, 795
MspI CCGG 8 cut(s) 208, 231, 242, 257, 273, 303, 376, 400
MspR9I CCNGG 7 cut(s) 23, 231, 242, 257, 273, 477, 540
MunI CAATTG 1 cut(s) 691
Mva1269I GAATGC 1 cut(s) 590
MvaI CCWGG 3 cut(s) 23, 477, 540
MwoI GCNNNNNNNGC 2 cut(s) 308, 566
NaeI GCCGGC 1 cut(s) 304
NciI CCSGG 4 cut(s) 231, 242, 257, 273
NcoI CCATGG 1 cut(s) 833
NdeII GATC 3 cut(s) 492, 837, 913
NgoMIV GCCGGC 1 cut(s) 302
NlaIII CATG 9 cut(s) 149, 167, 199, 265, 374, 721, 837, 844, 892
NlaIV GGNNCC 3 cut(s) 28, 277, 295
NmuCI GTSAC 3 cut(s) 250, 740, 891
NspI RCATGY 1 cut(s) 892
PagI TCATGA 1 cut(s) 840
PasI CCCWGGG 1 cut(s) 22
PceI AGGCCT 1 cut(s) 772
PciI ACATGT 1 cut(s) 888
PctI GAATGC 1 cut(s) 590
PdiI GCCGGC 1 cut(s) 304
PflFI GACNNNGTC 1 cut(s) 263
PinAI ACCGGT 1 cut(s) 207
PkrI GCNGC 2 cut(s) 571, 825
PscI ACATGT 1 cut(s) 888
PshAI GACNNNNGTC 1 cut(s) 725
Psp6I CCWGG 3 cut(s) 21, 475, 538
PspEI GGTNACC 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 3 cut(s) 21, 475, 538
PspN4I GGNNCC 3 cut(s) 28, 277, 295
PspPI GGNCC 7 cut(s) 205, 210, 265, 293, 378, 397, 402
PstNI CAGNNNCTG 1 cut(s) 569
PsyI GACNNNGTC 1 cut(s) 263
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
Rsr2I CGGWCCG 1 cut(s) 210
RsrII CGGWCCG 1 cut(s) 210
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 3 cut(s) 318, 441, 795
SatI GCNGC 2 cut(s) 570, 824
Sau3AI GATC 3 cut(s) 492, 837, 913
Sau96I GGNCC 7 cut(s) 205, 210, 265, 293, 378, 397, 402
ScrFI CCNGG 7 cut(s) 23, 231, 242, 257, 273, 477, 540
SduI GDGCHC 1 cut(s) 31
SfaNI GCATC 2 cut(s) 640, 835
SgrAI CRCCGGYG 1 cut(s) 302
SinI GGWCC 5 cut(s) 205, 210, 265, 293, 402
Sse9I AATT 2 cut(s) 383, 691
SseBI AGGCCT 1 cut(s) 772
SsiI CCGC 2 cut(s) 160, 227
SspMI CTAG 4 cut(s) 44, 654, 680, 846
StuI AGGCCT 1 cut(s) 772
StyD4I CCNGG 7 cut(s) 21, 229, 240, 255, 271, 475, 538
StyI CCWWGG 2 cut(s) 435, 833
TaaI ACNGT 3 cut(s) 53, 84, 686
TaiI ACGT 1 cut(s) 467
TaqI TCGA 2 cut(s) 179, 237
TasI AATT 2 cut(s) 383, 691
Tru1I TTAA 3 cut(s) 318, 441, 795
Tru9I TTAA 3 cut(s) 318, 441, 795
TscAI CASTG 1 cut(s) 856
TseFI GTSAC 3 cut(s) 250, 740, 891
TseI GCWGC 2 cut(s) 569, 823
Tsp45I GTSAC 3 cut(s) 250, 740, 891
TspDTI ATGAA 3 cut(s) 764, 793, 888
TspGWI ACGGA 1 cut(s) 202
TspRI CASTG 1 cut(s) 856
Tth111I GACNNNGTC 1 cut(s) 263
VpaK11BI GGWCC 5 cut(s) 205, 210, 265, 293, 402
XapI RAATTY 1 cut(s) 383
XceI RCATGY 1 cut(s) 892
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 4 cut(s) 44, 654, 680, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.