Rw2G016210

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0010778
Physical Location & Seq
Reverse (-)
19021922 .. 19024548
2627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G016210.1

Sequence Viewer

Length: 858 bp
ATGCTACTAGCAAACCGTCTGCTATTCACTTCCATATTCTTATCACCATCTTCTTCTTCTTCTCCCTCTCTAAAACCCCAACCTCTCACCCTCACCTTCTCAAACCCAACCCATGCAAAACCCACCCGCCATGTCTCCTCAGCCTCGAAAACCACACCCATCATGGAGAAAGACCGGTCCGTCCTGTTCGTCCCGCCCGGAGTCGACCCGGATGAGGTGACCCCGGACATGGTCCTACCCGGCTCCAACATCGTTATCGGACCCTACGCCGGCGACGCCAAGATTAAGGAGGTGGACTGCCCCAAACATGACCGGCCCGAATTCGCTATATTGGGCCGGTCCAATGTGGGCAAGTCCTCGCTTATCAATGCCTTGGTTAAGAAGAAGGATGTTGCTCTCACATCTAAGAAGCCAGGGAAGACTAAGTTGATCAATCATTTCTTGGTGAACAAAAGTTGGTACTTTGTGGATTTGCCTGGTTATGGGTTTGCTAAAGCTCCAGAAGCTGCTCGGATGGATTGGTCGGCATTCACTAAAGGTTTCTTCTTGAACAGAGATAATCTCGTTGCTGTTCTACTTCTTGTTGATGCTAGTGTTCCACCTCAGAGGATTGACCTAGACTGTGCGACTTGGCTTGGACGAAATAATATACCCATGACTTTTGTCTTCACAAAGTGTGACAAAATGAAAGGGGGCAAAGGTAAGAGGCCTGATGAGAACCTCAGGGATTTTAAGCAGTTCATCGCAGAAAACTACAAGCAGCATCCCCCATGGATCATGACCAGCAGTGTAACTGGTTTGGGCAGGGATGAACTTCTGCTTCACATGTCACAGCTTAGAAACTACTGGGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

285

Amino Acids

31.77

Weight (kDa)

9.53

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 108 - 225 3.4e-19 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22870
fragaria_vesca FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030
malus_domestica MD17G1236700.v1.1
prunus_persica Prupe.6G218100_v2.0.a1
pyrus_communis pycom02g15310 pycom15g26220 pycom17g23980
rosa_chinensis RchiOBHm_Chr2g0108521
rosa_laevigata RLG00000017675
rosa_roxburghii Rroxscaffold_2G00135060
rosa_rugosa Rorug02G0154000
rosa_samantha Rh2AG202900 Rh2BG215900 Rh2CG206900 Rh2DG210100
rosa_wichuraiana Rw2G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AccI GTMKAC 1 cut(s) 204
AciI CCGC 2 cut(s) 127, 194
AclWI GGATC 1 cut(s) 782
AcsI RAATTY 1 cut(s) 320
AcyI GRCGYC 1 cut(s) 276
AdeI CACNNNGTG 1 cut(s) 675
AfaI GTAC 1 cut(s) 461
AfiI CCNNNNNNNGG 4 cut(s) 214, 229, 269, 482
AflIII ACRYGT 1 cut(s) 825
AgeI ACCGGT 1 cut(s) 174
AgsI TTSAA 1 cut(s) 550
AjnI CCWGG 2 cut(s) 412, 475
AluBI AGCT 3 cut(s) 497, 506, 835
AluI AGCT 3 cut(s) 497, 506, 835
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 1 cut(s) 782
AlwNI CAGNNNCTG 1 cut(s) 506
AoxI GGCC 3 cut(s) 314, 334, 707
ApeKI GCWGC 2 cut(s) 506, 760
ApoI RAATTY 1 cut(s) 320
AsiGI ACCGGT 1 cut(s) 174
AspS9I GGNCC 6 cut(s) 177, 232, 260, 315, 334, 339
AsuC2I CCSGG 4 cut(s) 198, 209, 224, 240
AsuHPI GGTGA 5 cut(s) 36, 79, 85, 229, 457
AvaII GGWCC 4 cut(s) 177, 232, 260, 339
AxyI CCTNAGG 1 cut(s) 722
BbsI GAAGAC 2 cut(s) 425, 658
BbvCI CCTCAGC 1 cut(s) 139
BbvI GCAGC 2 cut(s) 493, 772
BccI CCATC 3 cut(s) 55, 167, 508
BciT130I CCWGG 2 cut(s) 414, 477
BclI TGATCA 1 cut(s) 429
BcnI CCSGG 4 cut(s) 198, 209, 224, 240
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 3 cut(s) 8, 591, 617
BisI GCNGC 2 cut(s) 507, 761
BlsI GCNGC 2 cut(s) 508, 762
Bme1390I CCNGG 6 cut(s) 198, 209, 224, 240, 414, 477
Bme18I GGWCC 4 cut(s) 177, 232, 260, 339
BmgT120I GGNCC 6 cut(s) 177, 232, 260, 315, 334, 339
BmiI GGNNCC 2 cut(s) 244, 262
BmrFI CCNGG 6 cut(s) 198, 209, 224, 240, 414, 477
BmrI ACTGGG 1 cut(s) 856
BmsI GCATC 2 cut(s) 577, 772
BmuI ACTGGG 1 cut(s) 856
BoxI GACNNNNGTC 1 cut(s) 662
BpiI GAAGAC 2 cut(s) 425, 658
BplI GAGNNNNNCTC 2 cut(s) 546, 578
BpmI CTGGAG 1 cut(s) 483
Bpu10I CCTNAGC 1 cut(s) 139
BpuMI CCSGG 4 cut(s) 198, 209, 224, 240
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 4 cut(s) 222, 372, 413, 770
BsaWI WCCGGW 1 cut(s) 174
Bsc4I CCNNNNNNNGG 4 cut(s) 214, 229, 269, 482
Bse118I RCCGGY 4 cut(s) 174, 269, 312, 336
Bse1I ACTGG 2 cut(s) 799, 851
Bse21I CCTNAGG 1 cut(s) 722
BseBI CCWGG 2 cut(s) 414, 477
BseDI CCNNGG 4 cut(s) 222, 372, 413, 770
BseGI GGATG 5 cut(s) 217, 394, 519, 763, 814
BseLI CCNNNNNNNGG 4 cut(s) 214, 229, 269, 482
BseMII CTCAG 3 cut(s) 153, 617, 736
BseNI ACTGG 2 cut(s) 799, 851
BseRI GAGGAG 1 cut(s) 127
BseXI GCAGC 2 cut(s) 493, 772
BshFI GGCC 3 cut(s) 316, 336, 709
BshTI ACCGGT 1 cut(s) 174
BsiSI CCGG 8 cut(s) 175, 198, 209, 224, 240, 270, 313, 337
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 4 cut(s) 214, 229, 269, 482
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 176
BsmI GAATGC 1 cut(s) 527
BsnI GGCC 3 cut(s) 316, 336, 709
Bsp143I GATC 3 cut(s) 429, 774, 850
Bsp19I CCATGG 1 cut(s) 770
BspACI CCGC 2 cut(s) 127, 194
BspANI GGCC 3 cut(s) 316, 336, 709
BspCNI CTCAG 3 cut(s) 152, 616, 735
BspHI TCATGA 1 cut(s) 777
BspLI GGNNCC 2 cut(s) 244, 262
BspPI GGATC 1 cut(s) 782
BsrFI RCCGGY 4 cut(s) 174, 269, 312, 336
BsrI ACTGG 2 cut(s) 799, 851
BssAI RCCGGY 4 cut(s) 174, 269, 312, 336
BssECI CCNNGG 4 cut(s) 222, 372, 413, 770
BssMI GATC 3 cut(s) 429, 774, 850
BssNI GRCGYC 1 cut(s) 276
BssT1I CCWWGG 2 cut(s) 372, 770
Bst2UI CCWGG 2 cut(s) 414, 477
Bst4CI ACNGT 2 cut(s) 17, 623
BstACI GRCGYC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 6 cut(s) 139, 405, 423, 603, 722, 836
BstDSI CCRYGG 1 cut(s) 770
BstEII GGTNACC 1 cut(s) 217
BstF5I GGATG 5 cut(s) 217, 394, 519, 763, 814
BstKTI GATC 3 cut(s) 432, 777, 853
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 3 cut(s) 429, 774, 850
BstMWI GCNNNNNNNGC 2 cut(s) 275, 503
BstNI CCWGG 2 cut(s) 414, 477
BstNSI RCATGY 1 cut(s) 829
BstPAI GACNNNNGTC 1 cut(s) 662
BstPI GGTNACC 1 cut(s) 217
BstSCI CCNGG 6 cut(s) 196, 207, 222, 238, 412, 475
BstV1I GCAGC 2 cut(s) 493, 772
BstV2I GAAGAC 2 cut(s) 425, 658
Bsu36I CCTNAGG 1 cut(s) 722
BsuRI GGCC 3 cut(s) 316, 336, 709
BtgI CCRYGG 1 cut(s) 770
BtgZI GCGATG 1 cut(s) 727
BtsCI GGATG 5 cut(s) 217, 394, 519, 763, 814
BtsI GCAGTG 1 cut(s) 793
BtsIMutI CAGTG 1 cut(s) 793
Cac8I GCNNGC 1 cut(s) 271
CaiI CAGNNNCTG 1 cut(s) 506
CciI TCATGA 1 cut(s) 777
Cfr10I RCCGGY 4 cut(s) 174, 269, 312, 336
Cfr13I GGNCC 6 cut(s) 177, 232, 260, 315, 334, 339
CpoI CGGWCCG 1 cut(s) 177
CseI GACGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 460
CspAI ACCGGT 1 cut(s) 174
CspI CGGWCCG 1 cut(s) 177
CviAII CATG 9 cut(s) 113, 131, 163, 229, 308, 655, 771, 778, 826
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 6 cut(s) 139, 405, 423, 603, 722, 836
DpnI GATC 3 cut(s) 431, 776, 852
DpnII GATC 3 cut(s) 429, 774, 850
DraIII CACNNNGTG 1 cut(s) 675
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
Eco130I CCWWGG 2 cut(s) 372, 770
Eco147I AGGCCT 1 cut(s) 709
Eco47I GGWCC 4 cut(s) 177, 232, 260, 339
Eco81I CCTNAGG 1 cut(s) 722
Eco91I GGTNACC 1 cut(s) 217
EcoO65I GGTNACC 1 cut(s) 217
EcoRI GAATTC 1 cut(s) 320
EcoRII CCWGG 2 cut(s) 412, 475
EcoT14I CCWWGG 2 cut(s) 372, 770
ErhI CCWWGG 2 cut(s) 372, 770
FaeI CATG 9 cut(s) 116, 134, 166, 232, 311, 658, 774, 781, 829
FaqI GGGAC 1 cut(s) 176
FatI CATG 9 cut(s) 112, 130, 162, 228, 307, 654, 770, 777, 825
FauI CCCGC 2 cut(s) 134, 201
FbaI TGATCA 1 cut(s) 429
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 507, 761
FokI GGATG 5 cut(s) 224, 401, 526, 750, 821
Fsp4HI GCNGC 2 cut(s) 507, 761
FspBI CTAG 3 cut(s) 8, 591, 617
GluI GCNGC 2 cut(s) 507, 761
GsuI CTGGAG 1 cut(s) 483
HaeIII GGCC 3 cut(s) 316, 336, 709
HapII CCGG 8 cut(s) 175, 198, 209, 224, 240, 270, 313, 337
HgaI GACGC 1 cut(s) 284
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 9 cut(s) 116, 134, 166, 232, 311, 658, 774, 781, 829
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 1 cut(s) 201
HpaII CCGG 8 cut(s) 175, 198, 209, 224, 240, 270, 313, 337
HphI GGTGA 5 cut(s) 36, 79, 85, 229, 457
Hpy166II GTNNAC 3 cut(s) 205, 295, 448
Hpy188I TCNGA 3 cut(s) 260, 513, 606
Hpy188III TCNNGA 3 cut(s) 500, 547, 778
Hpy8I GTNNAC 3 cut(s) 205, 295, 448
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 2 cut(s) 106, 379
HpyCH4III ACNGT 2 cut(s) 17, 623
HpyCH4V TGCA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 503
HpyF3I CTNAG 6 cut(s) 139, 405, 423, 603, 722, 836
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 9 cut(s) 116, 134, 166, 232, 311, 658, 774, 781, 829
KroI GCCGGC 1 cut(s) 269
KroNI GCCGGC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 429
Kzo9I GATC 3 cut(s) 429, 774, 850
LmnI GCTCC 2 cut(s) 248, 502
Lsp1109I GCAGC 2 cut(s) 493, 772
LweI GCATC 2 cut(s) 577, 772
MaeI CTAG 3 cut(s) 8, 591, 617
MaeIII GTNAC 4 cut(s) 217, 677, 790, 828
MalI GATC 3 cut(s) 431, 776, 852
MboI GATC 3 cut(s) 429, 774, 850
MboII GAAGA 8 cut(s) 42, 45, 48, 51, 394, 430, 535, 658
MluCI AATT 1 cut(s) 320
MlyI GAGTC 1 cut(s) 210
MmeI TCCRAC 1 cut(s) 270
MreI CGCCGGCG 1 cut(s) 269
MroNI GCCGGC 1 cut(s) 269
MseI TTAA 3 cut(s) 285, 378, 732
MspI CCGG 8 cut(s) 175, 198, 209, 224, 240, 270, 313, 337
MspR9I CCNGG 6 cut(s) 198, 209, 224, 240, 414, 477
Mva1269I GAATGC 1 cut(s) 527
MvaI CCWGG 2 cut(s) 414, 477
MwoI GCNNNNNNNGC 2 cut(s) 275, 503
NaeI GCCGGC 1 cut(s) 271
NciI CCSGG 4 cut(s) 198, 209, 224, 240
NcoI CCATGG 1 cut(s) 770
NdeII GATC 3 cut(s) 429, 774, 850
NgoMIV GCCGGC 1 cut(s) 269
NlaIII CATG 9 cut(s) 116, 134, 166, 232, 311, 658, 774, 781, 829
NlaIV GGNNCC 2 cut(s) 244, 262
NmuCI GTSAC 3 cut(s) 217, 677, 828
NspI RCATGY 1 cut(s) 829
PagI TCATGA 1 cut(s) 777
PceI AGGCCT 1 cut(s) 709
PciI ACATGT 1 cut(s) 825
PctI GAATGC 1 cut(s) 527
PdiI GCCGGC 1 cut(s) 271
PflFI GACNNNGTC 1 cut(s) 230
PinAI ACCGGT 1 cut(s) 174
PkrI GCNGC 2 cut(s) 508, 762
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PscI ACATGT 1 cut(s) 825
PshAI GACNNNNGTC 1 cut(s) 662
Psp6I CCWGG 2 cut(s) 412, 475
PspEI GGTNACC 1 cut(s) 217
PspGI CCWGG 2 cut(s) 412, 475
PspN4I GGNNCC 2 cut(s) 244, 262
PspPI GGNCC 6 cut(s) 177, 232, 260, 315, 334, 339
PstNI CAGNNNCTG 1 cut(s) 506
PsyI GACNNNGTC 1 cut(s) 230
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
Rsr2I CGGWCCG 1 cut(s) 177
RsrII CGGWCCG 1 cut(s) 177
SalI GTCGAC 1 cut(s) 203
SaqAI TTAA 3 cut(s) 285, 378, 732
SatI GCNGC 2 cut(s) 507, 761
Sau3AI GATC 3 cut(s) 429, 774, 850
Sau96I GGNCC 6 cut(s) 177, 232, 260, 315, 334, 339
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 6 cut(s) 198, 209, 224, 240, 414, 477
SfaNI GCATC 2 cut(s) 577, 772
SgrAI CRCCGGYG 1 cut(s) 269
SinI GGWCC 4 cut(s) 177, 232, 260, 339
Sse9I AATT 1 cut(s) 320
SseBI AGGCCT 1 cut(s) 709
SsiI CCGC 2 cut(s) 127, 194
SspMI CTAG 3 cut(s) 8, 591, 617
StuI AGGCCT 1 cut(s) 709
StyD4I CCNGG 6 cut(s) 196, 207, 222, 238, 412, 475
StyI CCWWGG 2 cut(s) 372, 770
TaaI ACNGT 2 cut(s) 17, 623
TaqI TCGA 2 cut(s) 146, 204
TasI AATT 1 cut(s) 320
Tru1I TTAA 3 cut(s) 285, 378, 732
Tru9I TTAA 3 cut(s) 285, 378, 732
TscAI CASTG 1 cut(s) 793
TseFI GTSAC 3 cut(s) 217, 677, 828
TseI GCWGC 2 cut(s) 506, 760
Tsp45I GTSAC 3 cut(s) 217, 677, 828
TspDTI ATGAA 3 cut(s) 701, 730, 825
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 1 cut(s) 793
Tth111I GACNNNGTC 1 cut(s) 230
VpaK11BI GGWCC 4 cut(s) 177, 232, 260, 339
XapI RAATTY 1 cut(s) 320
XceI RCATGY 1 cut(s) 829
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 3 cut(s) 8, 591, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.