FvH4_1g18030

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010778
Physical Location & Seq
Reverse (-)
10491996 .. 10494843
2848 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18030.t3

Sequence Viewer

Length: 882 bp
ATGGTACTTCGAAACCGTCTGCTTTTCACTTCCATATTCTTATCGCCACCTCCCTCTCCCTCTCTAAAACCCCAACCTCTCACACTCACCTTCCCAACCTCAACCACCCCAAAACCCTCCCGGCATGTCTCCTCAGCCTCGAAAACCACACCCATCTTGGAGAAAGACCGCGCCGTCCTCTTCGTCCCGCCCGGAGTCGACCATGATGAGGTGACCCAAGACACGGTCCTACCCGGGTCCAACATCGTCATCGGACCCTACGCTGGCGATGCCAAGATTAAGGAGGTGGTGTTTGTGAAGAGCAGTAGTAGAGCTAAGGACTGCCCCAAACATGACCGCCCCGAGTTTGCTATACTGGGCCGGTCCAATGTGGGAAAGTCTTCGCTTATCAATGCCTTGGTTAAGAAGAAGGATGTTGCTCTCACTTCTAAGAAGCCAGGGAAGACTAAGTTGATCAATCATTTCTTGGTGAACAAAAGTTGGTACATTGTGGATTTGCCTGGTTATGGGTTCGCTAAAGCTCCAGAAGCTGCACGGATGGATTGGTCTGCATTCACAAAAGGTTTCTTTTTAAACAGAGATAATCTTGTTGCTGTTCTACTTCTTGTTGATGCCAGTGTTCCACCTCAGAGGATTGACCTAGACTGTGCGAATTGGCTTGGACGAAACAATATACCAGTGACTTTTGTCTTCACGAAGTGCGACAAAATGAAAGGGGGCAAAGGTAAAAGGCCTGACGAGAACCTCAGGGATTTCAAGCAGTTCATTGCAGAAAACTACAAGCAACATCCCCCATGGATCATGACTAGCAGCGTAACTGGTTTGGGCAGGGATGAACTTCTGCTTCACATGTCACAGCTTAGAAATTACTGGGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

294

Amino Acids

32.69

Weight (kDa)

9.74

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 116 - 148 4e-08 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22870
fragaria_vesca FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030
malus_domestica MD17G1236700.v1.1
prunus_persica Prupe.6G218100_v2.0.a1
pyrus_communis pycom02g15310 pycom15g26220 pycom17g23980
rosa_chinensis RchiOBHm_Chr2g0108521
rosa_laevigata RLG00000017675
rosa_roxburghii Rroxscaffold_2G00135060
rosa_rugosa Rorug02G0154000
rosa_samantha Rh2AG202900 Rh2BG215900 Rh2CG206900 Rh2DG210100
rosa_wichuraiana Rw2G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 173
AccI GTMKAC 1 cut(s) 198
AccII CGCG 1 cut(s) 171
AciI CCGC 3 cut(s) 169, 188, 337
AclWI GGATC 1 cut(s) 806
AdeI CACNNNGTG 1 cut(s) 699
AfaI GTAC 2 cut(s) 6, 485
AfiI CCNNNNNNNGG 4 cut(s) 208, 223, 263, 506
AflIII ACRYGT 1 cut(s) 849
AgsI TTSAA 1 cut(s) 757
AjnI CCWGG 2 cut(s) 436, 499
AluBI AGCT 4 cut(s) 314, 521, 530, 859
AluI AGCT 4 cut(s) 314, 521, 530, 859
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 806
AlwNI CAGNNNCTG 1 cut(s) 530
Ama87I CYCGRG 2 cut(s) 233, 341
AoxI GGCC 2 cut(s) 358, 731
ApeKI GCWGC 2 cut(s) 530, 810
Asp700I GAANNNNTTC 1 cut(s) 379
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 5 cut(s) 226, 237, 254, 358, 363
AsuC2I CCSGG 4 cut(s) 121, 192, 234, 235
AsuHPI GGTGA 3 cut(s) 79, 223, 481
AsuII TTCGAA 1 cut(s) 10
AvaI CYCGRG 2 cut(s) 233, 341
AvaII GGWCC 4 cut(s) 226, 237, 254, 363
AxyI CCTNAGG 1 cut(s) 746
BbsI GAAGAC 3 cut(s) 372, 449, 682
BbvCI CCTCAGC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 517, 822
BccI CCATC 2 cut(s) 161, 532
BceAI ACGGC 1 cut(s) 158
BciT130I CCWGG 2 cut(s) 438, 501
BclI TGATCA 1 cut(s) 453
BcnI CCSGG 4 cut(s) 121, 192, 234, 235
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 2 cut(s) 641, 807
BisI GCNGC 2 cut(s) 531, 811
BlsI GCNGC 2 cut(s) 532, 812
Bme1390I CCNGG 6 cut(s) 121, 192, 234, 235, 438, 501
Bme18I GGWCC 4 cut(s) 226, 237, 254, 363
BmeT110I CYCGRG 2 cut(s) 233, 341
BmgT120I GGNCC 5 cut(s) 226, 237, 254, 358, 363
BmiI GGNNCC 2 cut(s) 238, 256
BmrFI CCNGG 6 cut(s) 121, 192, 234, 235, 438, 501
BmrI ACTGGG 2 cut(s) 365, 880
BmsI GCATC 2 cut(s) 259, 601
BmuI ACTGGG 2 cut(s) 365, 880
BoxI GACNNNNGTC 1 cut(s) 686
BpiI GAAGAC 3 cut(s) 372, 449, 682
BpmI CTGGAG 1 cut(s) 507
Bpu10I CCTNAGC 2 cut(s) 133, 315
Bpu14I TTCGAA 1 cut(s) 10
BpuMI CCSGG 4 cut(s) 121, 192, 234, 235
BsaJI CCNNGG 4 cut(s) 233, 396, 437, 794
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 4 cut(s) 208, 223, 263, 506
Bse118I RCCGGY 1 cut(s) 360
Bse1I ACTGG 5 cut(s) 360, 615, 677, 823, 875
Bse21I CCTNAGG 1 cut(s) 746
Bse3DI GCAATG 1 cut(s) 765
BseBI CCWGG 2 cut(s) 438, 501
BseDI CCNNGG 4 cut(s) 233, 396, 437, 794
BseGI GGATG 4 cut(s) 418, 543, 787, 838
BseLI CCNNNNNNNGG 4 cut(s) 208, 223, 263, 506
BseMI GCAATG 1 cut(s) 765
BseMII CTCAG 3 cut(s) 147, 641, 760
BseNI ACTGG 5 cut(s) 360, 615, 677, 823, 875
BseRI GAGGAG 1 cut(s) 121
BseXI GCAGC 2 cut(s) 517, 822
BsgI GTGCAG 1 cut(s) 516
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 2 cut(s) 360, 733
BsiHKCI CYCGRG 2 cut(s) 233, 341
BsiSI CCGG 4 cut(s) 121, 192, 234, 361
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 4 cut(s) 208, 223, 263, 506
BsmAI GTCTC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 551
BsnI GGCC 2 cut(s) 360, 733
BsoBI CYCGRG 2 cut(s) 233, 341
Bsp119I TTCGAA 1 cut(s) 10
Bsp143I GATC 3 cut(s) 453, 798, 874
Bsp19I CCATGG 1 cut(s) 794
BspACI CCGC 3 cut(s) 169, 188, 337
BspANI GGCC 2 cut(s) 360, 733
BspCNI CTCAG 3 cut(s) 146, 640, 759
BspFNI CGCG 1 cut(s) 171
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 2 cut(s) 238, 256
BspPI GGATC 1 cut(s) 806
BspQI GCTCTTC 1 cut(s) 293
BspT104I TTCGAA 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 765
BsrFI RCCGGY 1 cut(s) 360
BsrI ACTGG 5 cut(s) 360, 615, 677, 823, 875
BssAI RCCGGY 1 cut(s) 360
BssECI CCNNGG 4 cut(s) 233, 396, 437, 794
BssMI GATC 3 cut(s) 453, 798, 874
BssT1I CCWWGG 2 cut(s) 396, 794
Bst2UI CCWGG 2 cut(s) 438, 501
Bst4CI ACNGT 3 cut(s) 17, 226, 647
Bst6I CTCTTC 2 cut(s) 185, 293
BstBI TTCGAA 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 7 cut(s) 133, 315, 429, 447, 627, 746, 860
BstDSI CCRYGG 1 cut(s) 794
BstEII GGTNACC 1 cut(s) 211
BstF5I GGATG 4 cut(s) 418, 543, 787, 838
BstFNI CGCG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 3 cut(s) 456, 801, 877
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 3 cut(s) 453, 798, 874
BstMWI GCNNNNNNNGC 2 cut(s) 269, 527
BstNI CCWGG 2 cut(s) 438, 501
BstNSI RCATGY 2 cut(s) 128, 853
BstPAI GACNNNNGTC 1 cut(s) 686
BstPI GGTNACC 1 cut(s) 211
BstSCI CCNGG 6 cut(s) 119, 190, 232, 233, 436, 499
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 517, 822
BstV2I GAAGAC 3 cut(s) 372, 449, 682
Bsu36I CCTNAGG 1 cut(s) 746
BsuRI GGCC 2 cut(s) 360, 733
BtgI CCRYGG 1 cut(s) 794
BtgZI GCGATG 1 cut(s) 282
BtsCI GGATG 4 cut(s) 418, 543, 787, 838
BtsIMutI CAGTG 2 cut(s) 622, 684
Cac8I GCNNGC 1 cut(s) 265
CaiI CAGNNNCTG 1 cut(s) 530
CciI TCATGA 1 cut(s) 801
CfoI GCGC 1 cut(s) 173
Cfr10I RCCGGY 1 cut(s) 360
Cfr13I GGNCC 5 cut(s) 226, 237, 254, 358, 363
Cfr9I CCCGGG 1 cut(s) 233
Csp6I GTAC 2 cut(s) 5, 484
CviAII CATG 6 cut(s) 125, 203, 332, 795, 802, 850
CviJI RGCY 9 cut(s) 137, 314, 360, 436, 521, 530, 658, 733, 859
CviKI_1 RGCY 9 cut(s) 137, 314, 360, 436, 521, 530, 658, 733, 859
CviQI GTAC 2 cut(s) 5, 484
DdeI CTNAG 7 cut(s) 133, 315, 429, 447, 627, 746, 860
DpnI GATC 3 cut(s) 455, 800, 876
DpnII GATC 3 cut(s) 453, 798, 874
DraI TTTAAA 1 cut(s) 573
DraIII CACNNNGTG 1 cut(s) 699
DrdI GACNNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 173
Eam1104I CTCTTC 2 cut(s) 185, 293
EarI CTCTTC 2 cut(s) 185, 293
Eco130I CCWWGG 2 cut(s) 396, 794
Eco147I AGGCCT 1 cut(s) 733
Eco47I GGWCC 4 cut(s) 226, 237, 254, 363
Eco81I CCTNAGG 1 cut(s) 746
Eco88I CYCGRG 2 cut(s) 233, 341
Eco91I GGTNACC 1 cut(s) 211
EcoO65I GGTNACC 1 cut(s) 211
EcoRII CCWGG 2 cut(s) 436, 499
EcoT14I CCWWGG 2 cut(s) 396, 794
ErhI CCWWGG 2 cut(s) 396, 794
FaeI CATG 6 cut(s) 128, 206, 335, 798, 805, 853
FaqI GGGAC 1 cut(s) 170
FatI CATG 6 cut(s) 124, 202, 331, 794, 801, 849
FauI CCCGC 1 cut(s) 195
FbaI TGATCA 1 cut(s) 453
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 531, 811
FokI GGATG 4 cut(s) 425, 550, 774, 845
Fsp4HI GCNGC 2 cut(s) 531, 811
FspBI CTAG 2 cut(s) 641, 807
GlaI GCGC 1 cut(s) 172
GluI GCNGC 2 cut(s) 531, 811
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 2 cut(s) 360, 733
HapII CCGG 4 cut(s) 121, 192, 234, 361
HhaI GCGC 1 cut(s) 173
Hin1II CATG 6 cut(s) 128, 206, 335, 798, 805, 853
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 1 cut(s) 195
HpaII CCGG 4 cut(s) 121, 192, 234, 361
HphI GGTGA 3 cut(s) 79, 223, 481
Hpy166II GTNNAC 2 cut(s) 199, 472
Hpy188I TCNGA 2 cut(s) 254, 630
Hpy188III TCNNGA 3 cut(s) 524, 694, 802
Hpy8I GTNNAC 2 cut(s) 199, 472
HpyAV CCTTC 2 cut(s) 100, 403
HpyCH4III ACNGT 3 cut(s) 17, 226, 647
HpyCH4V TGCA 3 cut(s) 533, 551, 770
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 527
HpyF3I CTNAG 7 cut(s) 133, 315, 429, 447, 627, 746, 860
Hsp92II CATG 6 cut(s) 128, 206, 335, 798, 805, 853
HspAI GCGC 1 cut(s) 171
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 3 cut(s) 453, 798, 874
LguI GCTCTTC 1 cut(s) 293
LmnI GCTCC 1 cut(s) 526
Lsp1109I GCAGC 2 cut(s) 517, 822
LweI GCATC 2 cut(s) 259, 601
MaeI CTAG 2 cut(s) 641, 807
MaeIII GTNAC 4 cut(s) 211, 679, 814, 852
MalI GATC 3 cut(s) 455, 800, 876
MboI GATC 3 cut(s) 453, 798, 874
MboII GAAGA 6 cut(s) 172, 310, 372, 418, 454, 682
MluCI AATT 2 cut(s) 652, 865
MlyI GAGTC 1 cut(s) 204
MmeI TCCRAC 1 cut(s) 264
MroXI GAANNNNTTC 1 cut(s) 379
MseI TTAA 3 cut(s) 279, 402, 572
MspI CCGG 4 cut(s) 121, 192, 234, 361
MspR9I CCNGG 6 cut(s) 121, 192, 234, 235, 438, 501
Mva1269I GAATGC 1 cut(s) 551
MvaI CCWGG 2 cut(s) 438, 501
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 269, 527
NciI CCSGG 4 cut(s) 121, 192, 234, 235
NcoI CCATGG 1 cut(s) 794
NdeII GATC 3 cut(s) 453, 798, 874
NlaIII CATG 6 cut(s) 128, 206, 335, 798, 805, 853
NlaIV GGNNCC 2 cut(s) 238, 256
NmuCI GTSAC 3 cut(s) 211, 679, 852
NspI RCATGY 2 cut(s) 128, 853
NspV TTCGAA 1 cut(s) 10
PagI TCATGA 1 cut(s) 801
PceI AGGCCT 1 cut(s) 733
PciI ACATGT 1 cut(s) 849
PciSI GCTCTTC 1 cut(s) 293
PctI GAATGC 1 cut(s) 551
PdmI GAANNNNTTC 1 cut(s) 379
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 2 cut(s) 532, 812
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PscI ACATGT 1 cut(s) 849
PshAI GACNNNNGTC 1 cut(s) 686
Psp6I CCWGG 2 cut(s) 436, 499
PspEI GGTNACC 1 cut(s) 211
PspGI CCWGG 2 cut(s) 436, 499
PspN4I GGNNCC 2 cut(s) 238, 256
PspPI GGNCC 5 cut(s) 226, 237, 254, 358, 363
PstNI CAGNNNCTG 1 cut(s) 530
PsyI GACNNNGTC 1 cut(s) 224
RsaI GTAC 2 cut(s) 6, 485
RsaNI GTAC 2 cut(s) 5, 484
SalI GTCGAC 1 cut(s) 197
SapI GCTCTTC 1 cut(s) 293
SaqAI TTAA 3 cut(s) 279, 402, 572
SatI GCNGC 2 cut(s) 531, 811
Sau3AI GATC 3 cut(s) 453, 798, 874
Sau96I GGNCC 5 cut(s) 226, 237, 254, 358, 363
SchI GAGTC 1 cut(s) 204
ScrFI CCNGG 6 cut(s) 121, 192, 234, 235, 438, 501
SfaNI GCATC 2 cut(s) 259, 601
SfuI TTCGAA 1 cut(s) 10
SinI GGWCC 4 cut(s) 226, 237, 254, 363
SmaI CCCGGG 1 cut(s) 235
Sse9I AATT 2 cut(s) 652, 865
SseBI AGGCCT 1 cut(s) 733
SsiI CCGC 3 cut(s) 169, 188, 337
SspMI CTAG 2 cut(s) 641, 807
StuI AGGCCT 1 cut(s) 733
StyD4I CCNGG 6 cut(s) 119, 190, 232, 233, 436, 499
StyI CCWWGG 2 cut(s) 396, 794
TaaI ACNGT 3 cut(s) 17, 226, 647
TaqI TCGA 3 cut(s) 10, 140, 198
TasI AATT 2 cut(s) 652, 865
Tru1I TTAA 3 cut(s) 279, 402, 572
Tru9I TTAA 3 cut(s) 279, 402, 572
TscAI CASTG 2 cut(s) 622, 684
TseFI GTSAC 3 cut(s) 211, 679, 852
TseI GCWGC 2 cut(s) 530, 810
Tsp45I GTSAC 3 cut(s) 211, 679, 852
TspDTI ATGAA 3 cut(s) 725, 754, 849
TspGWI ACGGA 1 cut(s) 550
TspMI CCCGGG 1 cut(s) 233
TspRI CASTG 2 cut(s) 622, 684
Tth111I GACNNNGTC 1 cut(s) 224
VpaK11BI GGWCC 4 cut(s) 226, 237, 254, 363
XceI RCATGY 2 cut(s) 128, 853
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XmaI CCCGGG 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 379
XspI CTAG 2 cut(s) 641, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.