MD17G1236700.v1.1

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0010778
Physical Location & Seq
Reverse (-)
28537453 .. 28541238
3786 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1236700.v1.1.491

Sequence Viewer

Length: 915 bp
ATGTTACTCAGAAACCGCCTCCTAACCCTGCAAATCACTTCCTTCTTATCACCGCTTCCTTCCCCACCTATCAAAACCCGACCTTCCACCCTCTCCTTCCGAACTCTCCTCTCAAACCCAACTCATCCGAGCCAAAACCCAAACCCAAAACGCAATGTCCTAGCTCCAAAAGCCACGGCTAACTCAACAATCCTGGACAAGAACGTCCTGTTCATGTCGCCTGGGGTCGACCCGGCCGAGGAGGTGACTGAAAATATGGTCCTACCCGGTTCGAACATCGTGCTCGGACCCTATGCCGGCGATGCCAAGATTAAGGAGGTGGAGTTCGTGAAAAGCAGTGCCAGAGCTAAGGATTGCCCAAAACATGATCGACCCGAATTCGCTATTCTGGGTCGATCCAATGTGGGCAAGTCCTCACTCATTAATTCCTTGGTTCGCAAGAAGGATGTTGCTCTTACATCTAAGAAACCAGGGAAGACTAAGCTCATCAATCATTTCTTGGTCAACAAAAGTTGGTACTTTGTGGATTTGCCTGGTTATGGGTTTGCTAAAGCTCCAGATGCTGCTCGAATGGATTGGTCTGCATTCACAAAAGGTTTCTTTTTGAGCAGAGATACTCTTGTTACCGTCCTACTCCTTGTTGATGCTAGTGTTCCACCTCAGAAAATCGACCTAGACTGCGCTAATTGGCTTGGACGTAACAATATACCCATGACTTTTGTCTTCACCAAGTGTGACAAAATGAGGGCGGGCAAAGGTAAAAGGGCAGATGAGAACCTCAGTGATTTTCAACAGTTTATCAAAGACAACTACCGCGTACCTCCTCCGTGGATCATGACTAGCAGTGTAACTGGCTTGGGCAGGGATGAACTTTTGCTCCACATGTCGCAACTTAGAAACTACTGGGACCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

305

Amino Acids

33.96

Weight (kDa)

9.78

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 127 - 244 1.1e-18 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22870
fragaria_vesca FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030
malus_domestica MD17G1236700.v1.1
prunus_persica Prupe.6G218100_v2.0.a1
pyrus_communis pycom02g15310 pycom15g26220 pycom17g23980
rosa_chinensis RchiOBHm_Chr2g0108521
rosa_laevigata RLG00000017675
rosa_roxburghii Rroxscaffold_2G00135060
rosa_rugosa Rorug02G0154000
rosa_samantha Rh2AG202900 Rh2BG215900 Rh2CG206900 Rh2DG210100
rosa_wichuraiana Rw2G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 228
AccII CGCG 1 cut(s) 816
AciI CCGC 4 cut(s) 16, 53, 749, 814
AclWI GGATC 2 cut(s) 390, 839
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 1 cut(s) 377
AdeI CACNNNGTG 1 cut(s) 732
AfaI GTAC 2 cut(s) 518, 819
AfiI CCNNNNNNNGG 3 cut(s) 238, 296, 539
AflIII ACRYGT 1 cut(s) 882
AgsI TTSAA 1 cut(s) 791
AjnI CCWGG 4 cut(s) 192, 220, 469, 532
AloI GAACNNNNNNTCC 4 cut(s) 308, 340, 861, 893
AluBI AGCT 4 cut(s) 164, 347, 484, 554
AluI AGCT 4 cut(s) 164, 347, 484, 554
Alw21I GWGCWC 1 cut(s) 285
AlwI GGATC 2 cut(s) 390, 839
AlwNI CAGNNNCTG 1 cut(s) 563
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 563
ApoI RAATTY 1 cut(s) 377
AseI ATTAAT 1 cut(s) 423
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 3 cut(s) 259, 287, 907
AsuC2I CCSGG 2 cut(s) 233, 267
AsuHPI GGTGA 3 cut(s) 42, 256, 718
AsuII TTCGAA 1 cut(s) 272
AvaII GGWCC 3 cut(s) 259, 287, 907
BaeI ACNNNNGTAYC 2 cut(s) 606, 639
BbsI GAAGAC 2 cut(s) 482, 715
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 550
BceAI ACGGC 1 cut(s) 192
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 4 cut(s) 194, 222, 471, 534
BcnI CCSGG 2 cut(s) 233, 267
BfaI CTAG 4 cut(s) 161, 648, 674, 840
BisI GCNGC 1 cut(s) 564
BlsI GCNGC 1 cut(s) 565
Bme1390I CCNGG 6 cut(s) 194, 222, 233, 267, 471, 534
Bme18I GGWCC 3 cut(s) 259, 287, 907
BmgT120I GGNCC 3 cut(s) 259, 287, 907
BmiI GGNNCC 2 cut(s) 289, 908
BmrFI CCNGG 6 cut(s) 194, 222, 233, 267, 471, 534
BmrI ACTGGG 1 cut(s) 913
BmsI GCATC 3 cut(s) 292, 550, 634
BmuI ACTGGG 1 cut(s) 913
BoxI GACNNNNGTC 1 cut(s) 719
BpiI GAAGAC 2 cut(s) 482, 715
BpmI CTGGAG 1 cut(s) 540
Bpu10I CCTNAGC 1 cut(s) 348
Bpu14I TTCGAA 1 cut(s) 272
BpuMI CCSGG 2 cut(s) 233, 267
BsaJI CCNNGG 6 cut(s) 174, 221, 237, 429, 470, 827
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 861, 891
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 296, 539
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 2 cut(s) 856, 908
Bse3DI GCAATG 1 cut(s) 160
BseBI CCWGG 4 cut(s) 194, 222, 471, 534
BseDI CCNNGG 6 cut(s) 174, 221, 237, 429, 470, 827
BseGI GGATG 3 cut(s) 124, 451, 871
BseLI CCNNNNNNNGG 3 cut(s) 238, 296, 539
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 3 cut(s) 22, 674, 793
BseNI ACTGG 2 cut(s) 856, 908
BseRI GAGGAG 3 cut(s) 98, 254, 813
BseX3I CGGCCG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 550
Bsh1236I CGCG 1 cut(s) 816
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 3 cut(s) 233, 267, 297
BslI CCNNNNNNNGG 3 cut(s) 238, 296, 539
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 1 cut(s) 236
Bsp119I TTCGAA 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 3 cut(s) 367, 395, 831
BspACI CCGC 4 cut(s) 16, 53, 749, 814
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 3 cut(s) 21, 673, 792
BspFNI CGCG 1 cut(s) 816
BspHI TCATGA 1 cut(s) 834
BspLI GGNNCC 2 cut(s) 289, 908
BspPI GGATC 2 cut(s) 390, 839
BspT104I TTCGAA 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 2 cut(s) 856, 908
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 6 cut(s) 174, 221, 237, 429, 470, 827
BssMI GATC 3 cut(s) 367, 395, 831
BssT1I CCWWGG 1 cut(s) 429
Bst2UI CCWGG 4 cut(s) 194, 222, 471, 534
Bst4CI ACNGT 2 cut(s) 628, 795
BstBI TTCGAA 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 298, 751
BstDEI CTNAG 7 cut(s) 8, 348, 462, 480, 660, 779, 893
BstDSI CCRYGG 2 cut(s) 174, 827
BstF5I GGATG 3 cut(s) 124, 451, 871
BstFNI CGCG 1 cut(s) 816
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 3 cut(s) 370, 398, 834
BstMBI GATC 3 cut(s) 367, 395, 831
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 3 cut(s) 170, 302, 560
BstNI CCWGG 4 cut(s) 194, 222, 471, 534
BstNSI RCATGY 1 cut(s) 886
BstPAI GACNNNNGTC 1 cut(s) 719
BstSCI CCNGG 6 cut(s) 192, 220, 231, 265, 469, 532
BstUI CGCG 1 cut(s) 816
BstV1I GCAGC 1 cut(s) 550
BstV2I GAAGAC 2 cut(s) 482, 715
BstZI CGGCCG 1 cut(s) 234
BsuRI GGCC 1 cut(s) 236
BtgI CCRYGG 2 cut(s) 174, 827
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 3 cut(s) 124, 451, 871
BtsI GCAGTG 2 cut(s) 343, 850
BtsIMutI CAGTG 3 cut(s) 343, 787, 850
Cac8I GCNNGC 2 cut(s) 298, 751
CaiI CAGNNNCTG 1 cut(s) 563
CciI TCATGA 1 cut(s) 834
CfoI GCGC 1 cut(s) 683
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 3 cut(s) 259, 287, 907
Csp6I GTAC 2 cut(s) 517, 818
CviAII CATG 5 cut(s) 214, 365, 712, 835, 883
CviQI GTAC 2 cut(s) 517, 818
DdeI CTNAG 7 cut(s) 8, 348, 462, 480, 660, 779, 893
DpnI GATC 3 cut(s) 369, 397, 833
DpnII GATC 3 cut(s) 367, 395, 831
DraIII CACNNNGTG 1 cut(s) 732
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
EaeI YGGCCR 1 cut(s) 234
EagI CGGCCG 1 cut(s) 234
EclXI CGGCCG 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 429
Eco47I GGWCC 3 cut(s) 259, 287, 907
Eco52I CGGCCG 1 cut(s) 234
EcoRI GAATTC 1 cut(s) 377
EcoRII CCWGG 4 cut(s) 192, 220, 469, 532
EcoT14I CCWWGG 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 5 cut(s) 217, 368, 715, 838, 886
FaiI YATR 9 cut(s) 215, 257, 294, 366, 540, 707, 713, 836, 884
FatI CATG 5 cut(s) 213, 364, 711, 834, 882
FauI CCCGC 1 cut(s) 742
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 564
FokI GGATG 3 cut(s) 111, 458, 878
Fsp4HI GCNGC 1 cut(s) 564
FspBI CTAG 4 cut(s) 161, 648, 674, 840
GlaI GCGC 1 cut(s) 682
GluI GCNGC 1 cut(s) 564
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 1 cut(s) 236
HapII CCGG 3 cut(s) 233, 267, 297
HhaI GCGC 1 cut(s) 683
Hin1II CATG 5 cut(s) 217, 368, 715, 838, 886
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HincII GTYRAC 2 cut(s) 229, 505
HindII GTYRAC 2 cut(s) 229, 505
HpaII CCGG 3 cut(s) 233, 267, 297
HphI GGTGA 3 cut(s) 42, 256, 718
Hpy166II GTNNAC 2 cut(s) 229, 505
Hpy188I TCNGA 5 cut(s) 11, 101, 129, 287, 663
Hpy188III TCNNGA 3 cut(s) 328, 557, 835
Hpy8I GTNNAC 2 cut(s) 229, 505
HpyAV CCTTC 5 cut(s) 52, 69, 93, 106, 436
HpyCH4III ACNGT 2 cut(s) 628, 795
HpyCH4IV ACGT 2 cut(s) 204, 697
HpyCH4V TGCA 2 cut(s) 31, 584
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 302, 560
HpyF3I CTNAG 7 cut(s) 8, 348, 462, 480, 660, 779, 893
HpySE526I ACGT 2 cut(s) 204, 697
Hsp92II CATG 5 cut(s) 217, 368, 715, 838, 886
HspAI GCGC 1 cut(s) 681
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
Kzo9I GATC 3 cut(s) 367, 395, 831
LmnI GCTCC 3 cut(s) 169, 559, 882
Lsp1109I GCAGC 1 cut(s) 550
LweI GCATC 3 cut(s) 292, 550, 634
MaeI CTAG 4 cut(s) 161, 648, 674, 840
MaeII ACGT 2 cut(s) 204, 697
MaeIII GTNAC 6 cut(s) 3, 244, 622, 698, 734, 847
MalI GATC 3 cut(s) 369, 397, 833
MboI GATC 3 cut(s) 367, 395, 831
MboII GAAGA 2 cut(s) 487, 715
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 3 cut(s) 377, 424, 685
MroNI GCCGGC 1 cut(s) 296
MseI TTAA 2 cut(s) 312, 423
MspI CCGG 3 cut(s) 233, 267, 297
MspR9I CCNGG 6 cut(s) 194, 222, 233, 267, 471, 534
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 4 cut(s) 194, 222, 471, 534
MvnI CGCG 1 cut(s) 816
MwoI GCNNNNNNNGC 3 cut(s) 170, 302, 560
NaeI GCCGGC 1 cut(s) 298
NciI CCSGG 2 cut(s) 233, 267
NdeII GATC 3 cut(s) 367, 395, 831
NgoMIV GCCGGC 1 cut(s) 296
NlaIII CATG 5 cut(s) 217, 368, 715, 838, 886
NlaIV GGNNCC 2 cut(s) 289, 908
NmeAIII GCCGAG 1 cut(s) 262
NmuCI GTSAC 2 cut(s) 244, 734
NspI RCATGY 1 cut(s) 886
NspV TTCGAA 1 cut(s) 272
PagI TCATGA 1 cut(s) 834
PciI ACATGT 1 cut(s) 882
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PctI GAATGC 1 cut(s) 584
PdiI GCCGGC 1 cut(s) 298
PfoI TCCNGGA 1 cut(s) 192
PkrI GCNGC 1 cut(s) 565
PscI ACATGT 1 cut(s) 882
PshAI GACNNNNGTC 1 cut(s) 719
PshBI ATTAAT 1 cut(s) 423
Psp6I CCWGG 4 cut(s) 192, 220, 469, 532
PspGI CCWGG 4 cut(s) 192, 220, 469, 532
PspN4I GGNNCC 2 cut(s) 289, 908
PspPI GGNCC 3 cut(s) 259, 287, 907
PstNI CAGNNNCTG 1 cut(s) 563
RsaI GTAC 2 cut(s) 518, 819
RsaNI GTAC 2 cut(s) 517, 818
SalI GTCGAC 1 cut(s) 227
SaqAI TTAA 2 cut(s) 312, 423
SatI GCNGC 1 cut(s) 564
Sau3AI GATC 3 cut(s) 367, 395, 831
Sau96I GGNCC 3 cut(s) 259, 287, 907
ScrFI CCNGG 6 cut(s) 194, 222, 233, 267, 471, 534
SduI GDGCHC 1 cut(s) 285
SfaNI GCATC 3 cut(s) 292, 550, 634
SfuI TTCGAA 1 cut(s) 272
SinI GGWCC 3 cut(s) 259, 287, 907
Sse9I AATT 3 cut(s) 377, 424, 685
SsiI CCGC 4 cut(s) 16, 53, 749, 814
SspMI CTAG 4 cut(s) 161, 648, 674, 840
StyD4I CCNGG 6 cut(s) 192, 220, 231, 265, 469, 532
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 2 cut(s) 628, 795
TaiI ACGT 2 cut(s) 207, 700
TaqI TCGA 6 cut(s) 228, 272, 370, 394, 568, 669
TasI AATT 3 cut(s) 377, 424, 685
Tru1I TTAA 2 cut(s) 312, 423
Tru9I TTAA 2 cut(s) 312, 423
TscAI CASTG 3 cut(s) 343, 787, 850
TseFI GTSAC 2 cut(s) 244, 734
TseI GCWGC 1 cut(s) 563
Tsp45I GTSAC 2 cut(s) 244, 734
TspDTI ATGAA 2 cut(s) 202, 882
TspGWI ACGGA 1 cut(s) 816
TspRI CASTG 3 cut(s) 343, 787, 850
VpaK11BI GGWCC 3 cut(s) 259, 287, 907
VspI ATTAAT 1 cut(s) 423
XapI RAATTY 1 cut(s) 377
XceI RCATGY 1 cut(s) 886
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 4 cut(s) 161, 648, 674, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.