pycom17g23980

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0010778
Physical Location & Seq
Reverse (-)
22219748 .. 22221833
2086 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g23980.1

Sequence Viewer

Length: 915 bp
ATGTTACTCAGAAACCGCCTCCTAACCCTGCAAATCACTTCCTTCTTATCACTGCCTCTTTCCCCACCTATCAAAACCCGACCTTCCACCCTCTCCTTCCGAACCCTCCTCTCAAACCCAACCCATCCGAGCCAAAACCCAAACCCAAAACGCCATGTCCTTGCTCCAAAGGCCAAGGCTAACTCAACAATCCTGGACAAGAACGTCCTGTTCATGTCACCCGGGGTCGACCCAGCCGAGGAGGTGACCGAAAATATGGTCCTACCCAGTTCGAACATCGTGCTCGGACCGTACGCTGGTGACGCCAAGATTAAGGAGGTGGAGTTCGTGAAAAGCAGTGCCAGAGCTAAGGATTGCCCAAAACATGATCGACCCGAATTCGCTATTCTGGGTCGGTCCAATGTGGGCAAGTCCTCACTCATTAATTCCTTGGTTCGCAAGAAGGATGTTGCTCTTACATCTAAGAAACCAGGGAAGACTAAGCTCATCAATCATTTCTTGGTCAACAAAAGTTGGTACTTTGTGGATTTGCCTGGTTATGGGTTTGCTAAAGCTCCAGATGCTGCTCGAATGGATTGGTCTGCATTCACAAAAGGTTTCTTTTTGAGCAGAGATACTCTTGTTACCGTCCTACTCCTTGTTGATGCTAGTGTTCCGCCTCAGAAAATCGACCTAGACTGCGCTAATTGGCTTGGACGTAACAATATACCCATGACTTTTGTCTTCACCAAGTGTGACAAAATGAGGGCGGGCAAAGGTAAAAGGGCAGATGAGAACCTCAGGGATTTTCAACAGTTTATCAAAGACAACTACCGCGTACCTCCTCCGTGGATCATGACTAGCAGTGTAACTGGCTTGGGCAGGGATGAACTTTTGCTCCACATGTCGCAACTTAGAAACTACTGGGACCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

305

Amino Acids

34.12

Weight (kDa)

9.87

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 127 - 244 1.1e-18 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22870
fragaria_vesca FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030
malus_domestica MD17G1236700.v1.1
prunus_persica Prupe.6G218100_v2.0.a1
pyrus_communis pycom02g15310 pycom15g26220 pycom17g23980
rosa_chinensis RchiOBHm_Chr2g0108521
rosa_laevigata RLG00000017675
rosa_roxburghii Rroxscaffold_2G00135060
rosa_rugosa Rorug02G0154000
rosa_samantha Rh2AG202900 Rh2BG215900 Rh2CG206900 Rh2DG210100
rosa_wichuraiana Rw2G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 228
AccII CGCG 1 cut(s) 816
AciI CCGC 4 cut(s) 16, 656, 749, 814
AclWI GGATC 1 cut(s) 839
AcsI RAATTY 1 cut(s) 377
AcyI GRCGYC 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 732
AfaI GTAC 3 cut(s) 293, 518, 819
AfiI CCNNNNNNNGG 3 cut(s) 238, 296, 539
AflIII ACRYGT 1 cut(s) 882
AgsI TTSAA 1 cut(s) 791
AjnI CCWGG 3 cut(s) 192, 469, 532
AloI GAACNNNNNNTCC 4 cut(s) 308, 340, 861, 893
AluBI AGCT 3 cut(s) 347, 484, 554
AluI AGCT 3 cut(s) 347, 484, 554
Alw21I GWGCWC 1 cut(s) 285
AlwI GGATC 1 cut(s) 839
AlwNI CAGNNNCTG 1 cut(s) 563
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 563
ApoI RAATTY 1 cut(s) 377
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
AseI ATTAAT 1 cut(s) 423
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 4 cut(s) 259, 287, 396, 907
AsuC2I CCSGG 2 cut(s) 222, 223
AsuHPI GGTGA 4 cut(s) 210, 256, 311, 718
AsuII TTCGAA 1 cut(s) 272
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 4 cut(s) 259, 287, 396, 907
AxyI CCTNAGG 1 cut(s) 779
BaeI ACNNNNGTAYC 2 cut(s) 606, 639
BbsI GAAGAC 2 cut(s) 482, 715
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 550
BccI CCATC 1 cut(s) 132
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 3 cut(s) 194, 471, 534
BcnI CCSGG 2 cut(s) 222, 223
BfaI CTAG 3 cut(s) 648, 674, 840
BisI GCNGC 1 cut(s) 564
BlsI GCNGC 1 cut(s) 565
Bme1390I CCNGG 5 cut(s) 194, 222, 223, 471, 534
Bme18I GGWCC 4 cut(s) 259, 287, 396, 907
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 4 cut(s) 259, 287, 396, 907
BmiI GGNNCC 1 cut(s) 908
BmrFI CCNGG 5 cut(s) 194, 222, 223, 471, 534
BmrI ACTGGG 2 cut(s) 261, 913
BmsI GCATC 2 cut(s) 550, 634
BmuI ACTGGG 2 cut(s) 261, 913
BoxI GACNNNNGTC 1 cut(s) 719
BpiI GAAGAC 2 cut(s) 482, 715
BpmI CTGGAG 1 cut(s) 540
Bpu10I CCTNAGC 1 cut(s) 348
Bpu14I TTCGAA 1 cut(s) 272
BpuMI CCSGG 2 cut(s) 222, 223
BsaHI GRCGYC 1 cut(s) 303
BsaJI CCNNGG 7 cut(s) 174, 221, 222, 237, 429, 470, 827
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 861, 891
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 296, 539
Bse1I ACTGG 3 cut(s) 267, 856, 908
Bse21I CCTNAGG 1 cut(s) 779
BseBI CCWGG 3 cut(s) 194, 471, 534
BseDI CCNNGG 7 cut(s) 174, 221, 222, 237, 429, 470, 827
BseGI GGATG 3 cut(s) 124, 451, 871
BseLI CCNNNNNNNGG 3 cut(s) 238, 296, 539
BseMII CTCAG 3 cut(s) 22, 674, 793
BseNI ACTGG 3 cut(s) 267, 856, 908
BseRI GAGGAG 3 cut(s) 98, 254, 813
BseXI GCAGC 1 cut(s) 550
BseYI CCCAGC 1 cut(s) 232
Bsh1236I CGCG 1 cut(s) 816
BshFI GGCC 1 cut(s) 173
BsiHKAI GWGCWC 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 1 cut(s) 222
BsiWI CGTACG 1 cut(s) 291
BslI CCNNNNNNNGG 3 cut(s) 238, 296, 539
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 1 cut(s) 173
BsoBI CYCGRG 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 2 cut(s) 367, 831
BspACI CCGC 4 cut(s) 16, 656, 749, 814
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 3 cut(s) 21, 673, 792
BspFNI CGCG 1 cut(s) 816
BspHI TCATGA 1 cut(s) 834
BspLI GGNNCC 1 cut(s) 908
BspPI GGATC 1 cut(s) 839
BspT104I TTCGAA 1 cut(s) 272
BsrI ACTGG 3 cut(s) 267, 856, 908
BssECI CCNNGG 7 cut(s) 174, 221, 222, 237, 429, 470, 827
BssMI GATC 2 cut(s) 367, 831
BssNI GRCGYC 1 cut(s) 303
BssT1I CCWWGG 2 cut(s) 174, 429
Bst2UI CCWGG 3 cut(s) 194, 471, 534
Bst4CI ACNGT 3 cut(s) 291, 628, 795
BstACI GRCGYC 1 cut(s) 303
BstBI TTCGAA 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 751
BstDEI CTNAG 7 cut(s) 8, 348, 462, 480, 660, 779, 893
BstDSI CCRYGG 1 cut(s) 827
BstEII GGTNACC 1 cut(s) 244
BstF5I GGATG 3 cut(s) 124, 451, 871
BstFNI CGCG 1 cut(s) 816
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 2 cut(s) 370, 834
BstMBI GATC 2 cut(s) 367, 831
BstMWI GCNNNNNNNGC 3 cut(s) 170, 302, 560
BstNI CCWGG 3 cut(s) 194, 471, 534
BstNSI RCATGY 1 cut(s) 886
BstPAI GACNNNNGTC 1 cut(s) 719
BstPI GGTNACC 1 cut(s) 244
BstSCI CCNGG 5 cut(s) 192, 220, 221, 469, 532
BstUI CGCG 1 cut(s) 816
BstV1I GCAGC 1 cut(s) 550
BstV2I GAAGAC 2 cut(s) 482, 715
Bsu36I CCTNAGG 1 cut(s) 779
BsuRI GGCC 1 cut(s) 173
BtgI CCRYGG 1 cut(s) 827
BtsCI GGATG 3 cut(s) 124, 451, 871
BtsI GCAGTG 3 cut(s) 50, 343, 850
BtsIMutI CAGTG 3 cut(s) 50, 343, 850
Cac8I GCNNGC 1 cut(s) 751
CaiI CAGNNNCTG 1 cut(s) 563
CciI TCATGA 1 cut(s) 834
CfoI GCGC 1 cut(s) 683
Cfr13I GGNCC 4 cut(s) 259, 287, 396, 907
Cfr9I CCCGGG 1 cut(s) 221
CpoI CGGWCCG 1 cut(s) 287
CseI GACGC 1 cut(s) 311
Csp6I GTAC 3 cut(s) 292, 517, 818
CspI CGGWCCG 1 cut(s) 287
CviAII CATG 6 cut(s) 155, 214, 365, 712, 835, 883
CviJI RGCY 9 cut(s) 132, 173, 179, 236, 347, 484, 554, 691, 855
CviKI_1 RGCY 9 cut(s) 132, 173, 179, 236, 347, 484, 554, 691, 855
CviQI GTAC 3 cut(s) 292, 517, 818
DdeI CTNAG 7 cut(s) 8, 348, 462, 480, 660, 779, 893
DpnI GATC 2 cut(s) 369, 833
DpnII GATC 2 cut(s) 367, 831
DraIII CACNNNGTG 1 cut(s) 732
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
EciI GGCGGA 1 cut(s) 645
Eco130I CCWWGG 2 cut(s) 174, 429
Eco47I GGWCC 4 cut(s) 259, 287, 396, 907
Eco81I CCTNAGG 1 cut(s) 779
Eco88I CYCGRG 1 cut(s) 221
Eco91I GGTNACC 1 cut(s) 244
EcoO65I GGTNACC 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 377
EcoRII CCWGG 3 cut(s) 192, 469, 532
EcoT14I CCWWGG 2 cut(s) 174, 429
ErhI CCWWGG 2 cut(s) 174, 429
FaeI CATG 6 cut(s) 158, 217, 368, 715, 838, 886
FaiI YATR 9 cut(s) 156, 215, 257, 366, 540, 707, 713, 836, 884
FatI CATG 6 cut(s) 154, 213, 364, 711, 834, 882
FauI CCCGC 1 cut(s) 742
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 564
FokI GGATG 3 cut(s) 111, 458, 878
Fsp4HI GCNGC 1 cut(s) 564
FspBI CTAG 3 cut(s) 648, 674, 840
GlaI GCGC 1 cut(s) 682
GluI GCNGC 1 cut(s) 564
GsaI CCCAGC 1 cut(s) 236
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 1 cut(s) 173
HapII CCGG 1 cut(s) 222
HgaI GACGC 1 cut(s) 311
HhaI GCGC 1 cut(s) 683
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 6 cut(s) 158, 217, 368, 715, 838, 886
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HincII GTYRAC 2 cut(s) 229, 505
HindII GTYRAC 2 cut(s) 229, 505
HpaII CCGG 1 cut(s) 222
HphI GGTGA 4 cut(s) 210, 256, 311, 718
Hpy166II GTNNAC 2 cut(s) 229, 505
Hpy188I TCNGA 5 cut(s) 11, 101, 129, 287, 663
Hpy188III TCNNGA 3 cut(s) 328, 557, 835
Hpy8I GTNNAC 2 cut(s) 229, 505
HpyAV CCTTC 4 cut(s) 52, 93, 106, 436
HpyCH4III ACNGT 3 cut(s) 291, 628, 795
HpyCH4IV ACGT 2 cut(s) 204, 697
HpyCH4V TGCA 2 cut(s) 31, 584
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 302, 560
HpyF3I CTNAG 7 cut(s) 8, 348, 462, 480, 660, 779, 893
HpySE526I ACGT 2 cut(s) 204, 697
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 6 cut(s) 158, 217, 368, 715, 838, 886
HspAI GCGC 1 cut(s) 681
Kzo9I GATC 2 cut(s) 367, 831
LmnI GCTCC 3 cut(s) 169, 559, 882
Lsp1109I GCAGC 1 cut(s) 550
LweI GCATC 2 cut(s) 550, 634
MaeI CTAG 3 cut(s) 648, 674, 840
MaeII ACGT 2 cut(s) 204, 697
MaeIII GTNAC 8 cut(s) 3, 216, 244, 299, 622, 698, 734, 847
MalI GATC 2 cut(s) 369, 833
MboI GATC 2 cut(s) 367, 831
MboII GAAGA 2 cut(s) 487, 715
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 3 cut(s) 377, 424, 685
MseI TTAA 2 cut(s) 312, 423
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 5 cut(s) 194, 222, 223, 471, 534
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 3 cut(s) 194, 471, 534
MvnI CGCG 1 cut(s) 816
MwoI GCNNNNNNNGC 3 cut(s) 170, 302, 560
NciI CCSGG 2 cut(s) 222, 223
NdeII GATC 2 cut(s) 367, 831
NlaIII CATG 6 cut(s) 158, 217, 368, 715, 838, 886
NlaIV GGNNCC 1 cut(s) 908
NmeAIII GCCGAG 1 cut(s) 262
NmuCI GTSAC 4 cut(s) 216, 244, 299, 734
NspI RCATGY 1 cut(s) 886
NspV TTCGAA 1 cut(s) 272
PagI TCATGA 1 cut(s) 834
PciI ACATGT 1 cut(s) 882
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PctI GAATGC 1 cut(s) 584
Pfl23II CGTACG 1 cut(s) 291
PfoI TCCNGGA 1 cut(s) 192
PkrI GCNGC 1 cut(s) 565
PscI ACATGT 1 cut(s) 882
PshAI GACNNNNGTC 1 cut(s) 719
PshBI ATTAAT 1 cut(s) 423
Psp6I CCWGG 3 cut(s) 192, 469, 532
PspEI GGTNACC 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 232
PspGI CCWGG 3 cut(s) 192, 469, 532
PspLI CGTACG 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 908
PspPI GGNCC 4 cut(s) 259, 287, 396, 907
PstNI CAGNNNCTG 1 cut(s) 563
RsaI GTAC 3 cut(s) 293, 518, 819
RsaNI GTAC 3 cut(s) 292, 517, 818
Rsr2I CGGWCCG 1 cut(s) 287
RsrII CGGWCCG 1 cut(s) 287
SalI GTCGAC 1 cut(s) 227
SaqAI TTAA 2 cut(s) 312, 423
SatI GCNGC 1 cut(s) 564
Sau3AI GATC 2 cut(s) 367, 831
Sau96I GGNCC 4 cut(s) 259, 287, 396, 907
ScrFI CCNGG 5 cut(s) 194, 222, 223, 471, 534
SduI GDGCHC 1 cut(s) 285
SfaNI GCATC 2 cut(s) 550, 634
SfuI TTCGAA 1 cut(s) 272
SinI GGWCC 4 cut(s) 259, 287, 396, 907
SmaI CCCGGG 1 cut(s) 223
Sse9I AATT 3 cut(s) 377, 424, 685
SsiI CCGC 4 cut(s) 16, 656, 749, 814
SspMI CTAG 3 cut(s) 648, 674, 840
StyD4I CCNGG 5 cut(s) 192, 220, 221, 469, 532
StyI CCWWGG 2 cut(s) 174, 429
TaaI ACNGT 3 cut(s) 291, 628, 795
TaiI ACGT 2 cut(s) 207, 700
TaqI TCGA 5 cut(s) 228, 272, 370, 568, 669
TaqII GACCGA 2 cut(s) 263, 384
TasI AATT 3 cut(s) 377, 424, 685
Tru1I TTAA 2 cut(s) 312, 423
Tru9I TTAA 2 cut(s) 312, 423
TscAI CASTG 3 cut(s) 57, 343, 850
TseFI GTSAC 4 cut(s) 216, 244, 299, 734
TseI GCWGC 1 cut(s) 563
Tsp45I GTSAC 4 cut(s) 216, 244, 299, 734
TspDTI ATGAA 2 cut(s) 202, 882
TspGWI ACGGA 1 cut(s) 816
TspMI CCCGGG 1 cut(s) 221
TspRI CASTG 3 cut(s) 57, 343, 850
VpaK11BI GGWCC 4 cut(s) 259, 287, 396, 907
VspI ATTAAT 1 cut(s) 423
XapI RAATTY 1 cut(s) 377
XceI RCATGY 1 cut(s) 886
XmaI CCCGGG 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 3 cut(s) 648, 674, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.