Rroxscaffold_2G00135060

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010778
Physical Location & Seq
Forward (+)
72685506 .. 72688737
3232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00135060.1

Sequence Viewer

Length: 894 bp
ATGCTACTAGCAAACCGTCTGCTATTCACTTCCATTTTCTTATCACCATCTTCTTCTTCTTCTCCTTCTCCCTCTCTAAAACCCCAACCTCTCACCCTCACCTTCTCAAACCCAACCCATGCAAAACCCACCCGCCATGTCTCCTCAGCCTCGAAAACCACACCCATCATGGAGAAGGACCGGTCCGTCCTGTTCATCCCGCCCGGAGTCGACCCGGATGAGGTGACCCCGGACATGGTCCTACCCGGGTCCAACATCGTTATCGGACCCTACGCCGGCGACGCCAAGATTAAGGAGGTGGTGTTTGTCAAGAGCAGTAGTAGAGCTAAGGACTGCCCCAAACATGACCGGCCCGAATTCGCTATATTGGGCCGGTCCAATGTGGGCAAGTCCTCGCTTATTAATGCCTTGGTTAAGAAGAAGGATGTTGCTCTCACGTCTAAGAAGCCAGGGAAGACTAAGTTGATCAATCATTTCTTGGTGAACAAAAGTTGGTACTTTGTGGATTTGCCTGGTTATGGGTTTGCTAAAGCTCCAGAAGCTGCTCGGATGGATTGGTCGGCATTCACTAAAGGTTTCTTTTTGAACAGAGATAATCTCGTTGCTGTTCTACTTCTTGTTGATGCTAGTGTTCCACCTCAGAGGATTGACCTGGACTGTGCGAATTGGCTTGGACGAAATAATATACCCATGACTTTTGTCTTCACAAAGTGTGACAAAATGAAAGGGGGCAAAGGTAAGAGGCCTGATGAGAACCTCAGGGATTTTAAGCAGTTCATCGCAGAAAACTACAAGCAGCATCCCCCATGGATCATGACTAGCAGTGTAACTGGTTTGGGCAGGGATGAACTTCTGCTTCACATGTCACAGCTTAGAAACTACTGGGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

297

Amino Acids

33.07

Weight (kDa)

9.69

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 120 - 237 2.2e-19 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22870
fragaria_vesca FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030 FvH4_1g18030
malus_domestica MD17G1236700.v1.1
prunus_persica Prupe.6G218100_v2.0.a1
pyrus_communis pycom02g15310 pycom15g26220 pycom17g23980
rosa_chinensis RchiOBHm_Chr2g0108521
rosa_laevigata RLG00000017675
rosa_roxburghii Rroxscaffold_2G00135060
rosa_rugosa Rorug02G0154000
rosa_samantha Rh2AG202900 Rh2BG215900 Rh2CG206900 Rh2DG210100
rosa_wichuraiana Rw2G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 185
AccI GTMKAC 1 cut(s) 210
AciI CCGC 2 cut(s) 133, 200
AclWI GGATC 1 cut(s) 818
AcsI RAATTY 1 cut(s) 356
AcyI GRCGYC 1 cut(s) 282
AdeI CACNNNGTG 1 cut(s) 711
AfaI GTAC 1 cut(s) 497
AfiI CCNNNNNNNGG 4 cut(s) 220, 235, 275, 518
AflIII ACRYGT 1 cut(s) 861
AgeI ACCGGT 1 cut(s) 180
AgsI TTSAA 1 cut(s) 586
AjiI CACGTC 1 cut(s) 438
AjnI CCWGG 3 cut(s) 448, 511, 651
AluBI AGCT 4 cut(s) 326, 533, 542, 871
AluI AGCT 4 cut(s) 326, 533, 542, 871
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 1 cut(s) 818
AlwNI CAGNNNCTG 1 cut(s) 542
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 3 cut(s) 350, 370, 743
ApeKI GCWGC 2 cut(s) 542, 796
ApoI RAATTY 1 cut(s) 356
AseI ATTAAT 1 cut(s) 402
AsiGI ACCGGT 1 cut(s) 180
AspS9I GGNCC 8 cut(s) 178, 183, 238, 249, 266, 351, 370, 375
AsuC2I CCSGG 5 cut(s) 204, 215, 230, 246, 247
AsuHPI GGTGA 5 cut(s) 36, 85, 91, 235, 493
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 6 cut(s) 178, 183, 238, 249, 266, 375
AxyI CCTNAGG 1 cut(s) 758
BbsI GAAGAC 2 cut(s) 461, 694
BbvCI CCTCAGC 1 cut(s) 145
BbvI GCAGC 2 cut(s) 529, 808
BccI CCATC 3 cut(s) 55, 173, 544
BciT130I CCWGG 3 cut(s) 450, 513, 653
BclI TGATCA 1 cut(s) 465
BcnI CCSGG 5 cut(s) 204, 215, 230, 246, 247
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 3 cut(s) 8, 627, 819
BisI GCNGC 2 cut(s) 543, 797
BlsI GCNGC 2 cut(s) 544, 798
Bme1390I CCNGG 8 cut(s) 204, 215, 230, 246, 247, 450, 513, 653
Bme18I GGWCC 6 cut(s) 178, 183, 238, 249, 266, 375
BmeT110I CYCGRG 1 cut(s) 245
BmgBI CACGTC 1 cut(s) 438
BmgT120I GGNCC 8 cut(s) 178, 183, 238, 249, 266, 351, 370, 375
BmiI GGNNCC 2 cut(s) 250, 268
BmrFI CCNGG 8 cut(s) 204, 215, 230, 246, 247, 450, 513, 653
BmrI ACTGGG 1 cut(s) 892
BmsI GCATC 2 cut(s) 613, 808
BmuI ACTGGG 1 cut(s) 892
BoxI GACNNNNGTC 1 cut(s) 698
BpiI GAAGAC 2 cut(s) 461, 694
BplI GAGNNNNNCTC 2 cut(s) 582, 614
BpmI CTGGAG 1 cut(s) 519
Bpu10I CCTNAGC 2 cut(s) 145, 327
BpuMI CCSGG 5 cut(s) 204, 215, 230, 246, 247
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 5 cut(s) 228, 245, 408, 449, 806
BsaWI WCCGGW 1 cut(s) 180
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 4 cut(s) 220, 235, 275, 518
Bse118I RCCGGY 4 cut(s) 180, 275, 348, 372
Bse1I ACTGG 2 cut(s) 835, 887
Bse21I CCTNAGG 1 cut(s) 758
BseBI CCWGG 3 cut(s) 450, 513, 653
BseDI CCNNGG 5 cut(s) 228, 245, 408, 449, 806
BseGI GGATG 6 cut(s) 195, 223, 430, 555, 799, 850
BseLI CCNNNNNNNGG 4 cut(s) 220, 235, 275, 518
BseMII CTCAG 3 cut(s) 159, 653, 772
BseNI ACTGG 2 cut(s) 835, 887
BseRI GAGGAG 1 cut(s) 133
BseXI GCAGC 2 cut(s) 529, 808
BshFI GGCC 3 cut(s) 352, 372, 745
BshTI ACCGGT 1 cut(s) 180
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 8 cut(s) 181, 204, 215, 230, 246, 276, 349, 373
BslI CCNNNNNNNGG 4 cut(s) 220, 235, 275, 518
BsmAI GTCTC 1 cut(s) 145
BsmI GAATGC 1 cut(s) 563
BsnI GGCC 3 cut(s) 352, 372, 745
BsoBI CYCGRG 1 cut(s) 245
Bsp143I GATC 3 cut(s) 465, 810, 886
Bsp19I CCATGG 1 cut(s) 806
BspACI CCGC 2 cut(s) 133, 200
BspANI GGCC 3 cut(s) 352, 372, 745
BspCNI CTCAG 3 cut(s) 158, 652, 771
BspHI TCATGA 1 cut(s) 813
BspLI GGNNCC 2 cut(s) 250, 268
BspPI GGATC 1 cut(s) 818
BsrFI RCCGGY 4 cut(s) 180, 275, 348, 372
BsrI ACTGG 2 cut(s) 835, 887
BssAI RCCGGY 4 cut(s) 180, 275, 348, 372
BssECI CCNNGG 5 cut(s) 228, 245, 408, 449, 806
BssMI GATC 3 cut(s) 465, 810, 886
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 2 cut(s) 408, 806
Bst2UI CCWGG 3 cut(s) 450, 513, 653
Bst4CI ACNGT 2 cut(s) 17, 659
BstACI GRCGYC 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 7 cut(s) 145, 327, 441, 459, 639, 758, 872
BstDSI CCRYGG 1 cut(s) 806
BstEII GGTNACC 1 cut(s) 223
BstF5I GGATG 6 cut(s) 195, 223, 430, 555, 799, 850
BstKTI GATC 3 cut(s) 468, 813, 889
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 3 cut(s) 465, 810, 886
BstMWI GCNNNNNNNGC 2 cut(s) 281, 539
BstNI CCWGG 3 cut(s) 450, 513, 653
BstNSI RCATGY 1 cut(s) 865
BstPAI GACNNNNGTC 1 cut(s) 698
BstPI GGTNACC 1 cut(s) 223
BstSCI CCNGG 8 cut(s) 202, 213, 228, 244, 245, 448, 511, 651
BstV1I GCAGC 2 cut(s) 529, 808
BstV2I GAAGAC 2 cut(s) 461, 694
Bsu36I CCTNAGG 1 cut(s) 758
BsuRI GGCC 3 cut(s) 352, 372, 745
BtgI CCRYGG 1 cut(s) 806
BtgZI GCGATG 1 cut(s) 763
BtrI CACGTC 1 cut(s) 438
BtsCI GGATG 6 cut(s) 195, 223, 430, 555, 799, 850
BtsI GCAGTG 1 cut(s) 829
BtsIMutI CAGTG 1 cut(s) 829
Cac8I GCNNGC 1 cut(s) 277
CaiI CAGNNNCTG 1 cut(s) 542
CciI TCATGA 1 cut(s) 813
Cfr10I RCCGGY 4 cut(s) 180, 275, 348, 372
Cfr13I GGNCC 8 cut(s) 178, 183, 238, 249, 266, 351, 370, 375
Cfr9I CCCGGG 1 cut(s) 245
CpoI CGGWCCG 1 cut(s) 183
CseI GACGC 1 cut(s) 290
Csp6I GTAC 1 cut(s) 496
CspAI ACCGGT 1 cut(s) 180
CspI CGGWCCG 1 cut(s) 183
CviAII CATG 9 cut(s) 119, 137, 169, 235, 344, 691, 807, 814, 862
CviQI GTAC 1 cut(s) 496
DdeI CTNAG 7 cut(s) 145, 327, 441, 459, 639, 758, 872
DpnI GATC 3 cut(s) 467, 812, 888
DpnII GATC 3 cut(s) 465, 810, 886
DraIII CACNNNGTG 1 cut(s) 711
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
Eco130I CCWWGG 2 cut(s) 408, 806
Eco147I AGGCCT 1 cut(s) 745
Eco47I GGWCC 6 cut(s) 178, 183, 238, 249, 266, 375
Eco81I CCTNAGG 1 cut(s) 758
Eco88I CYCGRG 1 cut(s) 245
Eco91I GGTNACC 1 cut(s) 223
EcoO65I GGTNACC 1 cut(s) 223
EcoRI GAATTC 1 cut(s) 356
EcoRII CCWGG 3 cut(s) 448, 511, 651
EcoT14I CCWWGG 2 cut(s) 408, 806
ErhI CCWWGG 2 cut(s) 408, 806
FaeI CATG 9 cut(s) 122, 140, 172, 238, 347, 694, 810, 817, 865
FatI CATG 9 cut(s) 118, 136, 168, 234, 343, 690, 806, 813, 861
FauI CCCGC 2 cut(s) 140, 207
FbaI TGATCA 1 cut(s) 465
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 2 cut(s) 543, 797
FokI GGATG 6 cut(s) 182, 230, 437, 562, 786, 857
Fsp4HI GCNGC 2 cut(s) 543, 797
FspBI CTAG 3 cut(s) 8, 627, 819
GluI GCNGC 2 cut(s) 543, 797
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 3 cut(s) 352, 372, 745
HapII CCGG 8 cut(s) 181, 204, 215, 230, 246, 276, 349, 373
HgaI GACGC 1 cut(s) 290
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 9 cut(s) 122, 140, 172, 238, 347, 694, 810, 817, 865
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 1 cut(s) 207
HpaII CCGG 8 cut(s) 181, 204, 215, 230, 246, 276, 349, 373
HphI GGTGA 5 cut(s) 36, 85, 91, 235, 493
Hpy166II GTNNAC 2 cut(s) 211, 484
Hpy188I TCNGA 3 cut(s) 266, 549, 642
Hpy188III TCNNGA 3 cut(s) 310, 536, 814
Hpy8I GTNNAC 2 cut(s) 211, 484
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 4 cut(s) 75, 112, 169, 415
HpyCH4III ACNGT 2 cut(s) 17, 659
HpyCH4IV ACGT 1 cut(s) 437
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 539
HpyF3I CTNAG 7 cut(s) 145, 327, 441, 459, 639, 758, 872
HpySE526I ACGT 1 cut(s) 437
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 9 cut(s) 122, 140, 172, 238, 347, 694, 810, 817, 865
KroI GCCGGC 1 cut(s) 275
KroNI GCCGGC 1 cut(s) 277
Ksp22I TGATCA 1 cut(s) 465
Kzo9I GATC 3 cut(s) 465, 810, 886
LmnI GCTCC 1 cut(s) 538
Lsp1109I GCAGC 2 cut(s) 529, 808
LweI GCATC 2 cut(s) 613, 808
MaeI CTAG 3 cut(s) 8, 627, 819
MaeII ACGT 1 cut(s) 437
MaeIII GTNAC 4 cut(s) 223, 713, 826, 864
MalI GATC 3 cut(s) 467, 812, 888
MboI GATC 3 cut(s) 465, 810, 886
MboII GAAGA 7 cut(s) 42, 45, 48, 51, 430, 466, 694
MluCI AATT 2 cut(s) 356, 664
MlyI GAGTC 1 cut(s) 216
MmeI TCCRAC 1 cut(s) 276
MreI CGCCGGCG 1 cut(s) 275
MroNI GCCGGC 1 cut(s) 275
MseI TTAA 4 cut(s) 291, 402, 414, 768
MspI CCGG 8 cut(s) 181, 204, 215, 230, 246, 276, 349, 373
MspR9I CCNGG 8 cut(s) 204, 215, 230, 246, 247, 450, 513, 653
Mva1269I GAATGC 1 cut(s) 563
MvaI CCWGG 3 cut(s) 450, 513, 653
MwoI GCNNNNNNNGC 2 cut(s) 281, 539
NaeI GCCGGC 1 cut(s) 277
NciI CCSGG 5 cut(s) 204, 215, 230, 246, 247
NcoI CCATGG 1 cut(s) 806
NdeII GATC 3 cut(s) 465, 810, 886
NgoMIV GCCGGC 1 cut(s) 275
NlaIII CATG 9 cut(s) 122, 140, 172, 238, 347, 694, 810, 817, 865
NlaIV GGNNCC 2 cut(s) 250, 268
NmuCI GTSAC 3 cut(s) 223, 713, 864
NspI RCATGY 1 cut(s) 865
PagI TCATGA 1 cut(s) 813
PceI AGGCCT 1 cut(s) 745
PciI ACATGT 1 cut(s) 861
PctI GAATGC 1 cut(s) 563
PdiI GCCGGC 1 cut(s) 277
PflFI GACNNNGTC 1 cut(s) 236
PinAI ACCGGT 1 cut(s) 180
PkrI GCNGC 2 cut(s) 544, 798
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PscI ACATGT 1 cut(s) 861
PshAI GACNNNNGTC 1 cut(s) 698
PshBI ATTAAT 1 cut(s) 402
Psp6I CCWGG 3 cut(s) 448, 511, 651
PspEI GGTNACC 1 cut(s) 223
PspGI CCWGG 3 cut(s) 448, 511, 651
PspN4I GGNNCC 2 cut(s) 250, 268
PspPI GGNCC 8 cut(s) 178, 183, 238, 249, 266, 351, 370, 375
PstNI CAGNNNCTG 1 cut(s) 542
PsyI GACNNNGTC 1 cut(s) 236
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
Rsr2I CGGWCCG 1 cut(s) 183
RsrII CGGWCCG 1 cut(s) 183
SalI GTCGAC 1 cut(s) 209
SaqAI TTAA 4 cut(s) 291, 402, 414, 768
SatI GCNGC 2 cut(s) 543, 797
Sau3AI GATC 3 cut(s) 465, 810, 886
Sau96I GGNCC 8 cut(s) 178, 183, 238, 249, 266, 351, 370, 375
SchI GAGTC 1 cut(s) 216
ScrFI CCNGG 8 cut(s) 204, 215, 230, 246, 247, 450, 513, 653
SfaNI GCATC 2 cut(s) 613, 808
SgrAI CRCCGGYG 1 cut(s) 275
SinI GGWCC 6 cut(s) 178, 183, 238, 249, 266, 375
SmaI CCCGGG 1 cut(s) 247
Sse9I AATT 2 cut(s) 356, 664
SseBI AGGCCT 1 cut(s) 745
SsiI CCGC 2 cut(s) 133, 200
SspMI CTAG 3 cut(s) 8, 627, 819
StuI AGGCCT 1 cut(s) 745
StyD4I CCNGG 8 cut(s) 202, 213, 228, 244, 245, 448, 511, 651
StyI CCWWGG 2 cut(s) 408, 806
TaaI ACNGT 2 cut(s) 17, 659
TaiI ACGT 1 cut(s) 440
TaqI TCGA 2 cut(s) 152, 210
TasI AATT 2 cut(s) 356, 664
Tru1I TTAA 4 cut(s) 291, 402, 414, 768
Tru9I TTAA 4 cut(s) 291, 402, 414, 768
TscAI CASTG 1 cut(s) 829
TseFI GTSAC 3 cut(s) 223, 713, 864
TseI GCWGC 2 cut(s) 542, 796
Tsp45I GTSAC 3 cut(s) 223, 713, 864
TspDTI ATGAA 4 cut(s) 184, 737, 766, 861
TspGWI ACGGA 1 cut(s) 175
TspMI CCCGGG 1 cut(s) 245
TspRI CASTG 1 cut(s) 829
Tth111I GACNNNGTC 1 cut(s) 236
VpaK11BI GGWCC 6 cut(s) 178, 183, 238, 249, 266, 375
VspI ATTAAT 1 cut(s) 402
XapI RAATTY 1 cut(s) 356
XceI RCATGY 1 cut(s) 865
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XmaI CCCGGG 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 3 cut(s) 8, 627, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.