AT2G22880

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008509
Physical Location & Seq
Reverse (-)
9741119 .. 9741463
345 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G22880.1

Sequence Viewer

Length: 345 bp
ATGGAAGCTACTTCACAACCATGTTTCTCTCATAACTCCTCACTTCATTCGACCCGTAAGCAACCGGCAAAGCCATGGAAAAAACCCGTAACGGGCTTGCCTCAGAGGATGCATCCTAAAGTTTACAGAGTCGAGCCTGTTAACTTCAAGGAGTTAGTTCAGAGGCTAACTGGTGCAGAAGACGTTGAGCAAGAGGTACATCAAGTTGAAGCTAAACCAGTCAAGATTTCTGATGATACAACAACAGCTAAGGATAATCCGTTCGCGTTTGATCTTTCACCTTCGTCATCTCGGTTCTGGGAAGCTTTCCCTCTGCTTAGTCCTGCTAATCTATCAAGATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

114

Amino Acids

12.97

Weight (kDa)

8.82

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 36 - 60 7.6e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 266
AfaI GTAC 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 2 cut(s) 148, 209
AloI GAACNNNNNNTCC 2 cut(s) 245, 277
AluBI AGCT 4 cut(s) 8, 212, 248, 305
AluI AGCT 4 cut(s) 8, 212, 248, 305
AsuHPI GGTGA 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 186
BccI CCATC 1 cut(s) 333
BmsI GCATC 2 cut(s) 99, 121
BpiI GAAGAC 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 2 cut(s) 175, 218
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 2 cut(s) 112, 114
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 2 cut(s) 175, 218
BseRI GAGGAG 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 266
BsiSI CCGG 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 92
Bsp143I GATC 1 cut(s) 271
Bsp19I CCATGG 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 115
BspFNI CGCG 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 64
BsrI ACTGG 2 cut(s) 175, 218
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 1 cut(s) 271
BssT1I CCWWGG 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 3 cut(s) 102, 249, 317
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 2 cut(s) 112, 114
BstFNI CGCG 1 cut(s) 266
BstKTI GATC 1 cut(s) 274
BstMBI GATC 1 cut(s) 271
BstUI CGCG 1 cut(s) 266
BstV2I GAAGAC 1 cut(s) 186
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 2 cut(s) 112, 114
Cac8I GCNNGC 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 64
Csp6I GTAC 1 cut(s) 197
CviAII CATG 2 cut(s) 21, 75
CviJI RGCY 8 cut(s) 8, 73, 96, 136, 166, 212, 248, 305
CviKI_1 RGCY 8 cut(s) 8, 73, 96, 136, 166, 212, 248, 305
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 3 cut(s) 102, 249, 317
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 74
EcoT22I ATGCAT 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 2 cut(s) 24, 78
FaiI YATR 3 cut(s) 22, 33, 76
FatI CATG 2 cut(s) 20, 74
FokI GGATG 2 cut(s) 99, 121
HapII CCGG 1 cut(s) 65
Hin1II CATG 2 cut(s) 24, 78
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 1 cut(s) 129
HpaI GTTAAC 1 cut(s) 142
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 270
Hpy166II GTNNAC 2 cut(s) 124, 142
Hpy188I TCNGA 3 cut(s) 105, 162, 232
Hpy188III TCNNGA 2 cut(s) 223, 336
Hpy8I GTNNAC 2 cut(s) 124, 142
HpyAV CCTTC 1 cut(s) 291
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 2 cut(s) 112, 176
HpyF3I CTNAG 3 cut(s) 102, 249, 317
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 2 cut(s) 24, 78
KspAI GTTAAC 1 cut(s) 142
Kzo9I GATC 1 cut(s) 271
LpnPI CCDG 6 cut(s) 78, 150, 156, 231, 283, 336
LweI GCATC 2 cut(s) 99, 121
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 1 cut(s) 191
MlyI GAGTC 1 cut(s) 138
MnlI CCTC 6 cut(s) 49, 99, 111, 156, 187, 321
Mph1103I ATGCAT 1 cut(s) 114
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 19
MspI CCGG 1 cut(s) 65
MvnI CGCG 1 cut(s) 266
NcoI CCATGG 1 cut(s) 74
NdeII GATC 1 cut(s) 271
NlaIII CATG 2 cut(s) 24, 78
NsiI ATGCAT 1 cut(s) 114
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 19
SaqAI TTAA 1 cut(s) 141
Sau3AI GATC 1 cut(s) 271
SchI GAGTC 1 cut(s) 138
SetI ASST 7 cut(s) 10, 186, 198, 214, 250, 283, 307
SfaNI GCATC 2 cut(s) 99, 121
SmiMI CAYNNNNRTG 1 cut(s) 19
StyI CCWWGG 1 cut(s) 74
TaiI ACGT 1 cut(s) 186
TaqI TCGA 2 cut(s) 50, 132
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TspDTI ATGAA 1 cut(s) 35
TspGWI ACGGA 1 cut(s) 249
Zsp2I ATGCAT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.