Rmu_sc0007574.1_g000014

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007574.1
OG0008509
Physical Location & Seq
Reverse (-)
88731 .. 90260
1530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007574.1_g000014.1.cds

Sequence Viewer

Length: 465 bp
atggaagctgcttacacttcatcctcttcaattacctccaagcaagcaccactgccttaccaccactcctcactccactccgtcaagaaaaactcagccaagccgtggcgaaagcctgcagtggcgccgctccctccgacccctccacgagtgtacaaagtcgaccccatcaactttcgtggccttgtccagaagctcaccagtgcacccgagtacctgaacgagccgactcggtcgactaacctccaaagcgttactggcagcacttcgcctttttcagttatgtacaaggacttggctgagacattagggatgagtagtactcctcatcatcagaagaaggcagtggatcaaaacatcacgggggactcgagctatctgcggttgaacttgtcgccggcttcgcagcattggttatcttttcctatgttgagccctggaactctgaccagtctggaactctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

154

Amino Acids

16.89

Weight (kDa)

9.66

Isoelectric Point (pI)

52.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 124
AccB7I CCANNNNNTGG 1 cut(s) 105
AccBSI CCGCTC 1 cut(s) 130
AccI GTMKAC 2 cut(s) 162, 236
AciI CCGC 2 cut(s) 128, 382
AclWI GGATC 1 cut(s) 357
AcyI GRCGYC 1 cut(s) 125
AfaI GTAC 4 cut(s) 155, 215, 287, 322
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 2 cut(s) 30, 388
AjnI CCWGG 1 cut(s) 436
AluBI AGCT 3 cut(s) 8, 196, 375
AluI AGCT 3 cut(s) 8, 196, 375
Alw21I GWGCWC 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 296
Alw44I GTGCAC 1 cut(s) 204
AlwI GGATC 1 cut(s) 357
Ama87I CYCGRG 2 cut(s) 209, 370
AoxI GGCC 1 cut(s) 181
ApaLI GTGCAC 1 cut(s) 204
ApeKI GCWGC 3 cut(s) 8, 261, 406
AspLEI GCGC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 190
AvaI CYCGRG 2 cut(s) 209, 370
BaeGI GKGCMC 1 cut(s) 208
BaeI ACNNNNGTAYC 2 cut(s) 197, 230
BanI GGYRCC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 437
BauI CACGAG 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 208
BbvI GCAGC 2 cut(s) 273, 418
BccI CCATC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 361, 395
BciT130I CCWGG 1 cut(s) 438
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 1 cut(s) 463
BfmI CTRYAG 1 cut(s) 117
BfoI RGCGCY 1 cut(s) 128
BisI GCNGC 4 cut(s) 9, 128, 262, 407
BlsI GCNGC 4 cut(s) 10, 129, 263, 408
BmcAI AGTACT 1 cut(s) 322
Bme1390I CCNGG 1 cut(s) 438
BmeT110I CYCGRG 2 cut(s) 209, 370
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 438
BplI GAGNNNNNCTC 2 cut(s) 307, 339
BsaHI GRCGYC 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 104, 436
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 397
Bse1I ACTGG 3 cut(s) 201, 262, 450
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 104, 436
BseGI GGATG 2 cut(s) 20, 318
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMII CTCAG 2 cut(s) 108, 291
BseNI ACTGG 3 cut(s) 201, 262, 450
BseRI GAGGAG 2 cut(s) 58, 315
BseSI GKGCMC 1 cut(s) 208
BseXI GCAGC 2 cut(s) 273, 418
Bsh1285I CGRYCG 1 cut(s) 236
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 124
BsiEI CGRYCG 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 208
BsiHKCI CYCGRG 2 cut(s) 209, 370
BsiSI CCGG 1 cut(s) 398
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 1 cut(s) 183
BsoBI CYCGRG 2 cut(s) 209, 370
Bsp1286I GDGCHC 2 cut(s) 208, 437
Bsp1407I TGTACA 2 cut(s) 153, 285
Bsp143I GATC 1 cut(s) 349
BspACI CCGC 2 cut(s) 128, 382
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 2 cut(s) 107, 292
BspLI GGNNCC 1 cut(s) 126
BspMAI CTGCAG 1 cut(s) 121
BspPI GGATC 1 cut(s) 357
BspT107I GGYRCC 1 cut(s) 124
BsrBI CCGCTC 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 397
BsrGI TGTACA 2 cut(s) 153, 285
BsrI ACTGG 3 cut(s) 201, 262, 450
BssAI RCCGGY 1 cut(s) 397
BssECI CCNNGG 2 cut(s) 104, 436
BssMI GATC 1 cut(s) 349
BssNI GRCGYC 1 cut(s) 125
BssSI CACGAG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 438
Bst6I CTCTTC 1 cut(s) 31
BstACI GRCGYC 1 cut(s) 125
BstAUI TGTACA 2 cut(s) 153, 285
BstC8I GCNNGC 3 cut(s) 45, 117, 399
BstDEI CTNAG 2 cut(s) 94, 300
BstDSI CCRYGG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 20, 318
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 1 cut(s) 352
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 1 cut(s) 349
BstMCI CGRYCG 1 cut(s) 236
BstMWI GCNNNNNNNGC 2 cut(s) 258, 403
BstNI CCWGG 1 cut(s) 438
BstSCI CCNGG 1 cut(s) 436
BstSFI CTRYAG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 208
BstV1I GCAGC 2 cut(s) 273, 418
BsuRI GGCC 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 104
BtsCI GGATG 2 cut(s) 20, 318
BtsI GCAGTG 3 cut(s) 50, 126, 351
BtsIMutI CAGTG 4 cut(s) 50, 126, 208, 351
Cac8I GCNNGC 3 cut(s) 45, 117, 399
CfoI GCGC 1 cut(s) 127
Cfr10I RCCGGY 1 cut(s) 397
Csp6I GTAC 4 cut(s) 154, 214, 286, 321
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviQI GTAC 4 cut(s) 154, 214, 286, 321
DdeI CTNAG 2 cut(s) 94, 300
DinI GGCGCC 1 cut(s) 126
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 437
Eco88I CYCGRG 2 cut(s) 209, 370
EcoRII CCWGG 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 437
EgeI GGCGCC 1 cut(s) 126
EheI GGCGCC 1 cut(s) 126
FaiI YATR 2 cut(s) 284, 428
FaqI GGGAC 1 cut(s) 380
FblI GTMKAC 2 cut(s) 162, 236
Fnu4HI GCNGC 4 cut(s) 9, 128, 262, 407
FokI GGATG 2 cut(s) 7, 325
FriOI GRGCYC 1 cut(s) 437
Fsp4HI GCNGC 4 cut(s) 9, 128, 262, 407
FspBI CTAG 1 cut(s) 463
GlaI GCGC 1 cut(s) 126
GluI GCNGC 4 cut(s) 9, 128, 262, 407
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 1 cut(s) 183
HapII CCGG 1 cut(s) 398
HhaI GCGC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 125
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HincII GTYRAC 2 cut(s) 163, 237
HindII GTYRAC 2 cut(s) 163, 237
HinfI GANTC 2 cut(s) 229, 368
HpaII CCGG 1 cut(s) 398
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 4 cut(s) 154, 163, 206, 237
Hpy188I TCNGA 3 cut(s) 138, 336, 447
Hpy188III TCNNGA 3 cut(s) 85, 190, 455
Hpy8I GTNNAC 4 cut(s) 154, 163, 206, 237
HpyAV CCTTC 1 cut(s) 334
HpyCH4V TGCA 2 cut(s) 119, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 403
HpyF3I CTNAG 2 cut(s) 94, 300
Hsp92I GRCGYC 1 cut(s) 125
HspAI GCGC 1 cut(s) 125
KasI GGCGCC 1 cut(s) 124
KroI GCCGGC 1 cut(s) 397
KroNI GCCGGC 1 cut(s) 399
Kzo9I GATC 1 cut(s) 349
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 9 cut(s) 129, 203, 214, 230, 243, 411, 423, 440, 450
Lsp1109I GCAGC 2 cut(s) 273, 418
MaeI CTAG 1 cut(s) 463
MaeIII GTNAC 1 cut(s) 253
MalI GATC 1 cut(s) 351
MbiI CCGCTC 1 cut(s) 130
MboI GATC 1 cut(s) 349
MboII GAAGA 2 cut(s) 18, 349
MhlI GDGCHC 2 cut(s) 208, 437
MluCI AATT 1 cut(s) 30
Mly113I GGCGCC 1 cut(s) 125
MlyI GAGTC 2 cut(s) 223, 362
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 7 cut(s) 34, 46, 79, 144, 153, 254, 336
MroNI GCCGGC 1 cut(s) 397
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 438
MwoI GCNNNNNNNGC 2 cut(s) 258, 403
NaeI GCCGGC 1 cut(s) 399
NarI GGCGCC 1 cut(s) 125
NdeII GATC 1 cut(s) 349
NgoMIV GCCGGC 1 cut(s) 397
NlaIV GGNNCC 1 cut(s) 126
PaeR7I CTCGAG 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PdiI GCCGGC 1 cut(s) 399
PflFI GACNNNGTC 1 cut(s) 232
PflMI CCANNNNNTGG 1 cut(s) 105
PkrI GCNGC 4 cut(s) 10, 129, 263, 408
PleI GAGTC 2 cut(s) 223, 362
PluTI GGCGCC 1 cut(s) 128
PpsI GAGTC 2 cut(s) 223, 362
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 1 cut(s) 126
PspXI VCTCGAGB 1 cut(s) 370
PstI CTGCAG 1 cut(s) 121
PsyI GACNNNGTC 1 cut(s) 232
RsaI GTAC 4 cut(s) 155, 215, 287, 322
RsaNI GTAC 4 cut(s) 154, 214, 286, 321
SalI GTCGAC 2 cut(s) 161, 235
SatI GCNGC 4 cut(s) 9, 128, 262, 407
Sau3AI GATC 1 cut(s) 349
ScaI AGTACT 1 cut(s) 322
SchI GAGTC 2 cut(s) 223, 362
ScrFI CCNGG 1 cut(s) 438
SduI GDGCHC 2 cut(s) 208, 437
SetI ASST 6 cut(s) 10, 38, 198, 219, 246, 377
SfcI CTRYAG 1 cut(s) 117
SfoI GGCGCC 1 cut(s) 126
Sfr274I CTCGAG 1 cut(s) 370
SlaI CTCGAG 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
Sse9I AATT 1 cut(s) 30
SsiI CCGC 2 cut(s) 128, 382
SspDI GGCGCC 1 cut(s) 124
SspMI CTAG 1 cut(s) 463
StyD4I CCNGG 1 cut(s) 436
TaqI TCGA 3 cut(s) 162, 236, 371
TaqII GACCGA 1 cut(s) 222
TasI AATT 1 cut(s) 30
TatI WGTACW 3 cut(s) 153, 285, 320
TauI GCSGC 1 cut(s) 130
TscAI CASTG 4 cut(s) 57, 126, 208, 351
TseI GCWGC 3 cut(s) 8, 261, 406
TspDTI ATGAA 1 cut(s) 9
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 4 cut(s) 57, 126, 208, 351
Tth111I GACNNNGTC 1 cut(s) 232
Van91I CCANNNNNTGG 1 cut(s) 105
VneI GTGCAC 1 cut(s) 204
XcmI CCANNNNNNNNNTGG 1 cut(s) 254
XhoI CTCGAG 1 cut(s) 370
XmiI GTMKAC 2 cut(s) 162, 236
XspI CTAG 1 cut(s) 463
ZrmI AGTACT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.