Rh2CG206800

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0008509
Physical Location & Seq
Forward (+)
20142815 .. 20143345
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG206800.1

Sequence Viewer

Length: 531 bp
ATGGAAGCTGCTTACACTTCATCCTCTTCAATTACCTCCAAGCAAGCACCACTGCCTTACCACCACTCCTCACTCCACTCCGTCAAGAAAAACTCAGCCAAGCCGTGGCGAAAGCCTGCAGTGGCACCGCTCCCTCCGACCCCTCCACGAGTGTACAAAGTCGACCCCATCAACTTTCGTGGCCTTGTCCAGAAGCTCACCAGTGCACCCGAGTACCTGAACGAGCCGACTCGGTCGACTAACCTCCAAAGCGTGGCGCCTCCACCGATCGAAATCCAAAGAGGACCACCACATGTTCCTTCTCCGGTTTCAGCTAAGGTTACTGGCAGCACTTCGCCTTTTTCAGTTATGTACAAGGACTTGGCTGAGACATTAGGGCTGAGTAGTACTCCTCATCATCAGAAGAAGGCAGTGGATCAAAACATCACGGGGGACTCGAGCTATCTGCGGTTGAACTTGTCGCCGGCTTCGCAGCATTGGTTATCTTTTCCTATGTTGAGCCCTGGAACTCTGACCAGTCTGGAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

176

Amino Acids

19.13

Weight (kDa)

9.73

Isoelectric Point (pI)

57.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 47 - 67 1.3e-06 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 124, 256
AccB7I CCANNNNNTGG 2 cut(s) 105, 253
AccBSI CCGCTC 1 cut(s) 130
AccI GTMKAC 2 cut(s) 162, 236
AciI CCGC 2 cut(s) 128, 448
AclWI GGATC 1 cut(s) 423
AcyI GRCGYC 1 cut(s) 257
AfaI GTAC 4 cut(s) 155, 215, 353, 388
AfiI CCNNNNNNNGG 2 cut(s) 105, 253
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 2 cut(s) 30, 454
AjnI CCWGG 1 cut(s) 502
AluBI AGCT 4 cut(s) 8, 196, 314, 441
AluI AGCT 4 cut(s) 8, 196, 314, 441
Alw21I GWGCWC 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 362
Alw44I GTGCAC 1 cut(s) 204
AlwI GGATC 1 cut(s) 423
Ama87I CYCGRG 2 cut(s) 209, 436
AoxI GGCC 1 cut(s) 181
ApaLI GTGCAC 1 cut(s) 204
ApeKI GCWGC 3 cut(s) 8, 327, 472
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 190
AvaI CYCGRG 2 cut(s) 209, 436
AvaII GGWCC 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 208
BaeI ACNNNNGTAYC 2 cut(s) 197, 230
BanI GGYRCC 2 cut(s) 124, 256
BanII GRGCYC 1 cut(s) 503
BauI CACGAG 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 208
BbvI GCAGC 2 cut(s) 339, 484
BccI CCATC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BciT130I CCWGG 1 cut(s) 504
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 1 cut(s) 529
BfmI CTRYAG 1 cut(s) 117
BfoI RGCGCY 1 cut(s) 260
BisI GCNGC 3 cut(s) 9, 328, 473
BlsI GCNGC 3 cut(s) 10, 329, 474
BmcAI AGTACT 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 504
Bme18I GGWCC 1 cut(s) 284
BmeT110I CYCGRG 2 cut(s) 209, 436
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 126, 258
BmrFI CCNGG 1 cut(s) 504
BplI GAGNNNNNCTC 2 cut(s) 373, 405
Bpu10I CCTNAGC 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 272
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 104, 502
BsaWI WCCGGW 1 cut(s) 304
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 253
Bse118I RCCGGY 1 cut(s) 463
Bse1I ACTGG 3 cut(s) 201, 328, 516
Bse8I GATNNNNATC 1 cut(s) 272
BseBI CCWGG 1 cut(s) 504
BseDI CCNNGG 2 cut(s) 104, 502
BseGI GGATG 1 cut(s) 20
BseJI GATNNNNATC 1 cut(s) 272
BseLI CCNNNNNNNGG 2 cut(s) 105, 253
BseMII CTCAG 3 cut(s) 108, 357, 371
BseNI ACTGG 3 cut(s) 201, 328, 516
BseRI GAGGAG 2 cut(s) 58, 381
BseSI GKGCMC 1 cut(s) 208
BseXI GCAGC 2 cut(s) 339, 484
Bsh1285I CGRYCG 2 cut(s) 236, 270
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 2 cut(s) 124, 256
BsiEI CGRYCG 2 cut(s) 236, 270
BsiHKAI GWGCWC 1 cut(s) 208
BsiHKCI CYCGRG 2 cut(s) 209, 436
BsiSI CCGG 2 cut(s) 305, 464
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 2 cut(s) 105, 253
BsmAI GTCTC 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 446
BsnI GGCC 1 cut(s) 183
BsoBI CYCGRG 2 cut(s) 209, 436
Bsp1286I GDGCHC 2 cut(s) 208, 503
Bsp1407I TGTACA 2 cut(s) 153, 351
Bsp143I GATC 2 cut(s) 267, 415
BspACI CCGC 2 cut(s) 128, 448
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 3 cut(s) 107, 358, 372
BspLI GGNNCC 2 cut(s) 126, 258
BspMAI CTGCAG 1 cut(s) 121
BspPI GGATC 1 cut(s) 423
BspT107I GGYRCC 2 cut(s) 124, 256
BsrBI CCGCTC 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 463
BsrGI TGTACA 2 cut(s) 153, 351
BsrI ACTGG 3 cut(s) 201, 328, 516
BssAI RCCGGY 1 cut(s) 463
BssECI CCNNGG 2 cut(s) 104, 502
BssMI GATC 2 cut(s) 267, 415
BssNI GRCGYC 1 cut(s) 257
BssSI CACGAG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 504
Bst6I CTCTTC 1 cut(s) 31
BstACI GRCGYC 1 cut(s) 257
BstAUI TGTACA 2 cut(s) 153, 351
BstC8I GCNNGC 3 cut(s) 45, 117, 465
BstDEI CTNAG 4 cut(s) 94, 315, 366, 380
BstDSI CCRYGG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 20
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 2 cut(s) 270, 418
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 2 cut(s) 267, 415
BstMCI CGRYCG 2 cut(s) 236, 270
BstMWI GCNNNNNNNGC 1 cut(s) 469
BstNI CCWGG 1 cut(s) 504
BstNSI RCATGY 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 502
BstSFI CTRYAG 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 208
BstV1I GCAGC 2 cut(s) 339, 484
BsuRI GGCC 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 104
BtsCI GGATG 1 cut(s) 20
BtsI GCAGTG 3 cut(s) 50, 126, 417
BtsIMutI CAGTG 4 cut(s) 50, 126, 208, 417
Cac8I GCNNGC 3 cut(s) 45, 117, 465
CfoI GCGC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 463
Cfr13I GGNCC 1 cut(s) 284
Csp6I GTAC 4 cut(s) 154, 214, 352, 387
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 1 cut(s) 293
CviQI GTAC 4 cut(s) 154, 214, 352, 387
DdeI CTNAG 4 cut(s) 94, 315, 366, 380
DinI GGCGCC 1 cut(s) 258
DpnI GATC 2 cut(s) 269, 417
DpnII GATC 2 cut(s) 267, 415
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 503
Eco47I GGWCC 1 cut(s) 284
Eco88I CYCGRG 2 cut(s) 209, 436
EcoRII CCWGG 1 cut(s) 502
EcoT38I GRGCYC 1 cut(s) 503
EgeI GGCGCC 1 cut(s) 258
EheI GGCGCC 1 cut(s) 258
FaeI CATG 1 cut(s) 296
FaiI YATR 3 cut(s) 294, 350, 494
FaqI GGGAC 1 cut(s) 446
FatI CATG 1 cut(s) 292
FblI GTMKAC 2 cut(s) 162, 236
Fnu4HI GCNGC 3 cut(s) 9, 328, 473
FokI GGATG 1 cut(s) 7
FriOI GRGCYC 1 cut(s) 503
Fsp4HI GCNGC 3 cut(s) 9, 328, 473
FspBI CTAG 1 cut(s) 529
GlaI GCGC 1 cut(s) 258
GluI GCNGC 3 cut(s) 9, 328, 473
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 1 cut(s) 183
HapII CCGG 2 cut(s) 305, 464
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 1 cut(s) 296
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HincII GTYRAC 2 cut(s) 163, 237
HindII GTYRAC 2 cut(s) 163, 237
HinfI GANTC 2 cut(s) 229, 434
HpaII CCGG 2 cut(s) 305, 464
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 4 cut(s) 154, 163, 206, 237
Hpy188I TCNGA 3 cut(s) 138, 402, 513
Hpy188III TCNNGA 3 cut(s) 85, 190, 521
Hpy8I GTNNAC 4 cut(s) 154, 163, 206, 237
HpyAV CCTTC 2 cut(s) 309, 400
HpyCH4V TGCA 2 cut(s) 119, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 469
HpyF3I CTNAG 4 cut(s) 94, 315, 366, 380
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 1 cut(s) 296
HspAI GCGC 1 cut(s) 257
KasI GGCGCC 1 cut(s) 256
KroI GCCGGC 1 cut(s) 463
KroNI GCCGGC 1 cut(s) 465
Kzo9I GATC 2 cut(s) 267, 415
LmnI GCTCC 1 cut(s) 135
Lsp1109I GCAGC 2 cut(s) 339, 484
MaeI CTAG 1 cut(s) 529
MaeIII GTNAC 1 cut(s) 319
MalI GATC 2 cut(s) 269, 417
MbiI CCGCTC 1 cut(s) 130
MboI GATC 2 cut(s) 267, 415
MboII GAAGA 2 cut(s) 18, 415
MhlI GDGCHC 2 cut(s) 208, 503
MluCI AATT 1 cut(s) 30
Mly113I GGCGCC 1 cut(s) 257
MlyI GAGTC 2 cut(s) 223, 428
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 9 cut(s) 34, 46, 79, 144, 153, 254, 270, 275, 402
MroNI GCCGGC 1 cut(s) 463
MspI CCGG 2 cut(s) 305, 464
MspR9I CCNGG 1 cut(s) 504
MvaI CCWGG 1 cut(s) 504
MwoI GCNNNNNNNGC 1 cut(s) 469
NaeI GCCGGC 1 cut(s) 465
NarI GGCGCC 1 cut(s) 257
NdeII GATC 2 cut(s) 267, 415
NgoMIV GCCGGC 1 cut(s) 463
NlaIII CATG 1 cut(s) 296
NlaIV GGNNCC 2 cut(s) 126, 258
NspI RCATGY 1 cut(s) 296
PaeR7I CTCGAG 1 cut(s) 436
PciI ACATGT 1 cut(s) 292
PcsI WCGNNNNNNNCGW 1 cut(s) 434
PdiI GCCGGC 1 cut(s) 465
PflFI GACNNNGTC 1 cut(s) 232
PflMI CCANNNNNTGG 2 cut(s) 105, 253
PkrI GCNGC 3 cut(s) 10, 329, 474
Ple19I CGATCG 1 cut(s) 270
PleI GAGTC 2 cut(s) 223, 428
PluTI GGCGCC 1 cut(s) 260
PpsI GAGTC 2 cut(s) 223, 428
PscI ACATGT 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 502
PspGI CCWGG 1 cut(s) 502
PspN4I GGNNCC 2 cut(s) 126, 258
PspPI GGNCC 1 cut(s) 284
PspXI VCTCGAGB 1 cut(s) 436
PstI CTGCAG 1 cut(s) 121
PsyI GACNNNGTC 1 cut(s) 232
PvuI CGATCG 1 cut(s) 270
RsaI GTAC 4 cut(s) 155, 215, 353, 388
RsaNI GTAC 4 cut(s) 154, 214, 352, 387
SalI GTCGAC 2 cut(s) 161, 235
SatI GCNGC 3 cut(s) 9, 328, 473
Sau3AI GATC 2 cut(s) 267, 415
Sau96I GGNCC 1 cut(s) 284
ScaI AGTACT 1 cut(s) 388
SchI GAGTC 2 cut(s) 223, 428
ScrFI CCNGG 1 cut(s) 504
SduI GDGCHC 2 cut(s) 208, 503
SetI ASST 8 cut(s) 10, 38, 198, 219, 246, 316, 321, 443
SfcI CTRYAG 1 cut(s) 117
SfoI GGCGCC 1 cut(s) 258
Sfr274I CTCGAG 1 cut(s) 436
SinI GGWCC 1 cut(s) 284
SlaI CTCGAG 1 cut(s) 436
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
Sse9I AATT 1 cut(s) 30
SsiI CCGC 2 cut(s) 128, 448
SspDI GGCGCC 1 cut(s) 256
SspMI CTAG 1 cut(s) 529
StyD4I CCNGG 1 cut(s) 502
TaqI TCGA 4 cut(s) 162, 236, 270, 437
TaqII GACCGA 1 cut(s) 222
TasI AATT 1 cut(s) 30
TatI WGTACW 3 cut(s) 153, 351, 386
TscAI CASTG 4 cut(s) 57, 126, 208, 417
TseI GCWGC 3 cut(s) 8, 327, 472
TspDTI ATGAA 1 cut(s) 9
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 4 cut(s) 57, 126, 208, 417
Tth111I GACNNNGTC 1 cut(s) 232
Van91I CCANNNNNTGG 2 cut(s) 105, 253
VneI GTGCAC 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 284
XceI RCATGY 1 cut(s) 296
XhoI CTCGAG 1 cut(s) 436
XmiI GTMKAC 2 cut(s) 162, 236
XspI CTAG 1 cut(s) 529
ZrmI AGTACT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.