Prupe.6G218200_v2.0.a1

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0008509
Physical Location & Seq
Reverse (-)
22485430 .. 22486482
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G218200.1

Sequence Viewer

Length: 585 bp
ATGGAATCTCATTCCTCTTCTTCTTCTTCAGCCTCTTCCACCACCACATACTTGTCCCAAACTATGCAACCAACAAAGGGTTCAATCTCAAATTCAACTTCACTTCCATATCAGCAATCCTCACTCCACTCTGTTCGGAGGTCTTCGTCGAAGCCATGGCGGAAGCCGGCAGTGGCTCCACTACCGCCAACTCCGCCAAGAATCTACAAAGTGGACCCCATTAACTTCAAAGACCTTGTTCAGAGCCTCACCGGCCCCACGGAGTCTTTGGAGGCTGGAACTCTCCAAAGCGTTGCGTCGGCACCGATTGATGTTCATAGAAACGCCTCTGTTCTAAACCATGTTCCTTCTTCTGCTTCTTCCCCTGAATCAAAAATTATTTCACCATTTTCAGCCATGTACAAGGACTTGGCTGATACATTGGAGCTGAGCTCTACGCCTCATCATCAGAAGGTGCATGATAGCATGGTGAACCAGAGTTATACGAGACTGAACTTGCAGTCACCATCTTCCCATAATTGGTTTTCTTTTCCCCTGCTCAGTCCAGGGACTCTGTCCAGCCTGGAACAGAGCACTGTGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

195

Amino Acids

20.98

Weight (kDa)

8.93

Isoelectric Point (pI)

70.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 301
AciI CCGC 3 cut(s) 160, 185, 194
AcsI RAATTY 1 cut(s) 91
AcuI CTGAAG 1 cut(s) 12
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 2 cut(s) 77, 519
AgsI TTSAA 3 cut(s) 84, 96, 229
AjnI CCWGG 2 cut(s) 544, 561
AjuI GAANNNNNNNTTGG 2 cut(s) 64, 96
AluBI AGCT 2 cut(s) 427, 432
AluI AGCT 2 cut(s) 427, 432
Alw21I GWGCWC 2 cut(s) 434, 575
Alw26I GTCTC 1 cut(s) 481
AoxI GGCC 1 cut(s) 253
ApoI RAATTY 1 cut(s) 91
AspS9I GGNCC 2 cut(s) 214, 254
AsuHPI GGTGA 4 cut(s) 241, 375, 481, 495
AvaII GGWCC 1 cut(s) 214
BanI GGYRCC 1 cut(s) 301
BanII GRGCYC 1 cut(s) 434
BbsI GAAGAC 1 cut(s) 135
Bbv12I GWGCWC 2 cut(s) 434, 575
BccI CCATC 1 cut(s) 514
BciT130I CCWGG 2 cut(s) 546, 563
BcoDI GTCTC 1 cut(s) 481
BglI GCCNNNNNGGC 1 cut(s) 252
BlpI GCTNAGC 1 cut(s) 428
Bme1390I CCNGG 2 cut(s) 546, 563
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 214, 254
BmiI GGNNCC 4 cut(s) 177, 216, 256, 303
BmrFI CCNGG 2 cut(s) 546, 563
BpiI GAAGAC 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 416, 448
Bpu1102I GCTNAGC 1 cut(s) 428
BsaJI CCNNGG 3 cut(s) 155, 258, 545
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 519
Bse118I RCCGGY 2 cut(s) 166, 251
BseBI CCWGG 2 cut(s) 546, 563
BseDI CCNNGG 3 cut(s) 155, 258, 545
BseLI CCNNNNNNNGG 2 cut(s) 77, 519
BseMII CTCAG 2 cut(s) 419, 553
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 301
BsiHKAI GWGCWC 2 cut(s) 434, 575
BsiSI CCGG 2 cut(s) 167, 252
BslFI GGGAC 2 cut(s) 40, 562
BslI CCNNNNNNNGG 2 cut(s) 77, 519
BsmAI GTCTC 1 cut(s) 481
BsmFI GGGAC 2 cut(s) 40, 562
BsnI GGCC 1 cut(s) 255
Bsp1286I GDGCHC 2 cut(s) 434, 575
Bsp1407I TGTACA 1 cut(s) 399
Bsp1720I GCTNAGC 1 cut(s) 428
Bsp19I CCATGG 1 cut(s) 155
BspACI CCGC 3 cut(s) 160, 185, 194
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 2 cut(s) 420, 552
BspLI GGNNCC 4 cut(s) 177, 216, 256, 303
BspT107I GGYRCC 1 cut(s) 301
BsrFI RCCGGY 2 cut(s) 166, 251
BsrGI TGTACA 1 cut(s) 399
BssAI RCCGGY 2 cut(s) 166, 251
BssECI CCNNGG 3 cut(s) 155, 258, 545
BssT1I CCWWGG 1 cut(s) 155
Bst2UI CCWGG 2 cut(s) 546, 563
Bst4CI ACNGT 1 cut(s) 577
Bst6I CTCTTC 2 cut(s) 22, 40
BstAUI TGTACA 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 428, 539
BstDSI CCRYGG 2 cut(s) 155, 258
BstMAI GTCTC 1 cut(s) 481
BstMWI GCNNNNNNNGC 2 cut(s) 193, 252
BstNI CCWGG 2 cut(s) 546, 563
BstSCI CCNGG 2 cut(s) 544, 561
BstV2I GAAGAC 1 cut(s) 135
BsuRI GGCC 1 cut(s) 255
BtgI CCRYGG 2 cut(s) 155, 258
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 2 cut(s) 177, 573
Cac8I GCNNGC 1 cut(s) 168
Cfr10I RCCGGY 2 cut(s) 166, 251
Cfr13I GGNCC 2 cut(s) 214, 254
CseI GACGC 1 cut(s) 285
Csp6I GTAC 1 cut(s) 400
CviAII CATG 5 cut(s) 156, 341, 397, 458, 466
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 2 cut(s) 428, 539
Eam1104I CTCTTC 2 cut(s) 22, 40
EarI CTCTTC 2 cut(s) 22, 40
EciI GGCGGA 2 cut(s) 175, 183
Ecl136II GAGCTC 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 434
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 432
Eco57I CTGAAG 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 432
EcoRII CCWGG 2 cut(s) 544, 561
EcoT14I CCWWGG 1 cut(s) 155
EcoT38I GRGCYC 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 155
FaeI CATG 5 cut(s) 159, 344, 400, 461, 469
FaqI GGGAC 2 cut(s) 40, 562
FatI CATG 5 cut(s) 155, 340, 396, 457, 465
FriOI GRGCYC 1 cut(s) 434
HaeIII GGCC 1 cut(s) 255
HapII CCGG 2 cut(s) 167, 252
HgaI GACGC 1 cut(s) 285
Hin1II CATG 5 cut(s) 159, 344, 400, 461, 469
HinfI GANTC 5 cut(s) 5, 201, 263, 368, 550
HpaII CCGG 2 cut(s) 167, 252
HphI GGTGA 4 cut(s) 241, 375, 481, 495
Hpy166II GTNNAC 2 cut(s) 214, 472
Hpy188I TCNGA 3 cut(s) 138, 243, 450
Hpy8I GTNNAC 2 cut(s) 214, 472
Hpy99I CGWCG 2 cut(s) 151, 301
HpyAV CCTTC 2 cut(s) 357, 445
HpyCH4III ACNGT 1 cut(s) 577
HpyCH4V TGCA 3 cut(s) 67, 457, 499
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 252
HpyF3I CTNAG 2 cut(s) 428, 539
Hsp92II CATG 5 cut(s) 159, 344, 400, 461, 469
KroI GCCGGC 1 cut(s) 166
KroNI GCCGGC 1 cut(s) 168
LmnI GCTCC 2 cut(s) 181, 424
MaeIII GTNAC 1 cut(s) 501
MboII GAAGA 9 cut(s) 9, 12, 15, 18, 27, 135, 342, 351, 501
MhlI GDGCHC 2 cut(s) 434, 575
MluCI AATT 3 cut(s) 91, 375, 517
MlyI GAGTC 2 cut(s) 272, 544
MnlI CCTC 8 cut(s) 25, 43, 130, 132, 257, 265, 337, 450
MroNI GCCGGC 1 cut(s) 166
MseI TTAA 1 cut(s) 222
MspI CCGG 2 cut(s) 167, 252
MspR9I CCNGG 2 cut(s) 546, 563
MvaI CCWGG 2 cut(s) 546, 563
MwoI GCNNNNNNNGC 2 cut(s) 193, 252
NaeI GCCGGC 1 cut(s) 168
NcoI CCATGG 1 cut(s) 155
NgoMIV GCCGGC 1 cut(s) 166
NlaIII CATG 5 cut(s) 159, 344, 400, 461, 469
NlaIV GGNNCC 4 cut(s) 177, 216, 256, 303
NmuCI GTSAC 1 cut(s) 501
PdiI GCCGGC 1 cut(s) 168
PfeI GAWTC 3 cut(s) 5, 201, 368
PflFI GACNNNGTC 1 cut(s) 553
PleI GAGTC 2 cut(s) 271, 544
PpsI GAGTC 2 cut(s) 271, 544
Psp124BI GAGCTC 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 544, 561
PspGI CCWGG 2 cut(s) 544, 561
PspN4I GGNNCC 4 cut(s) 177, 216, 256, 303
PspPI GGNCC 2 cut(s) 214, 254
PsyI GACNNNGTC 1 cut(s) 553
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SacI GAGCTC 1 cut(s) 434
SaqAI TTAA 1 cut(s) 222
Sau96I GGNCC 2 cut(s) 214, 254
SchI GAGTC 2 cut(s) 272, 544
ScrFI CCNGG 2 cut(s) 546, 563
SduI GDGCHC 2 cut(s) 434, 575
SetI ASST 5 cut(s) 143, 237, 429, 434, 456
SinI GGWCC 1 cut(s) 214
Sse9I AATT 3 cut(s) 91, 375, 517
SsiI CCGC 3 cut(s) 160, 185, 194
SstI GAGCTC 1 cut(s) 434
StyD4I CCNGG 2 cut(s) 544, 561
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 1 cut(s) 577
TaqI TCGA 1 cut(s) 149
TasI AATT 3 cut(s) 91, 375, 517
TatI WGTACW 1 cut(s) 399
TfiI GAWTC 3 cut(s) 5, 201, 368
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 2 cut(s) 177, 580
TseFI GTSAC 1 cut(s) 501
Tsp45I GTSAC 1 cut(s) 501
TspDTI ATGAA 1 cut(s) 305
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 2 cut(s) 177, 580
Tth111I GACNNNGTC 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.