pycom15g26200

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008509
Physical Location & Seq
Forward (+)
20933033 .. 20933572
540 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g26200.1

Sequence Viewer

Length: 540 bp
ATGGAATCTTATTCCTCTTCCTCTTCAGCCTCCTACACCGCCACGAAGGGTTCAATTTCAAACTCAAAGCAGCTTCCCTATCACCAGTCATCACTCCACTCGGTTCGAAAATCTTCGTCGAAGCCATGGAAGAAGCCTGCGGTTGCACCAGTCCCACCAACCCCACCAAGAATCTACAAAGTTGACCCCATTAACTGCAGGGAGCTGGTCCAGAGCCTCACATGCGCGCCGGAGTTTATGGAGACTCGGTCTCTCCAGAGCGTAGCGCCTTCTCCGATCGATATCCGTGTGTCTTCTGTACCAAATCATGTCCCTTCTTCTTCACCAAAAATTAGCTCACCATTTTCGGTTATGTACAAGGACTTGTCGGATACTTTGGAGCTGAGTCCGATGCCTCTCCATAAGAAGGTGCATGATAGCACGGTGGACTCGAGCTATCTGAGACTGAATTTGCAGTCCCCATCTTCCCATCATTGGTTTTCTTTCCCTCAGCTCAGCCCAGGGACTTTGTCCAGTATCGAACAAGGCGCAGTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

180

Amino Acids

19.59

Weight (kDa)

9.27

Isoelectric Point (pI)

81.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 227
AciI CCGC 2 cut(s) 39, 140
AcsI RAATTY 1 cut(s) 448
AcuI CTGAAG 1 cut(s) 9
AfaI GTAC 2 cut(s) 300, 356
AfiI CCNNNNNNNGG 2 cut(s) 406, 474
AgsI TTSAA 2 cut(s) 54, 60
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 6 cut(s) 73, 205, 336, 382, 435, 493
AluI AGCT 6 cut(s) 73, 205, 336, 382, 435, 493
Alw26I GTCTC 3 cut(s) 236, 255, 436
Ama87I CYCGRG 1 cut(s) 430
ApeKI GCWGC 1 cut(s) 70
ApoI RAATTY 1 cut(s) 448
Asp700I GAANNNNTTC 1 cut(s) 112
AspLEI GCGC 4 cut(s) 227, 229, 268, 530
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 3 cut(s) 74, 315, 330
AsuII TTCGAA 1 cut(s) 106
AvaI CYCGRG 1 cut(s) 430
AvaII GGWCC 1 cut(s) 208
BbsI GAAGAC 1 cut(s) 285
BbvCI CCTCAGC 1 cut(s) 489
BbvI GCAGC 1 cut(s) 82
BccI CCATC 2 cut(s) 469, 477
BciT130I CCWGG 1 cut(s) 501
BciVI GTATCC 1 cut(s) 364
BcoDI GTCTC 3 cut(s) 236, 255, 436
BfmI CTRYAG 1 cut(s) 196
BfoI RGCGCY 1 cut(s) 269
BfuI GTATCC 1 cut(s) 364
BisI GCNGC 1 cut(s) 71
BlpI GCTNAGC 1 cut(s) 494
BlsI GCNGC 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 1 cut(s) 381
BpiI GAAGAC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 489
Bpu1102I GCTNAGC 1 cut(s) 494
Bpu14I TTCGAA 1 cut(s) 106
Bsa29I ATCGAT 1 cut(s) 279
BsaBI GATNNNNATC 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 255
BsaJI CCNNGG 3 cut(s) 125, 499, 500
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 474
Bse1I ACTGG 3 cut(s) 85, 149, 513
Bse8I GATNNNNATC 1 cut(s) 281
BseBI CCWGG 1 cut(s) 501
BseCI ATCGAT 1 cut(s) 279
BseDI CCNNGG 3 cut(s) 125, 499, 500
BseJI GATNNNNATC 1 cut(s) 281
BseLI CCNNNNNNNGG 2 cut(s) 406, 474
BseMII CTCAG 4 cut(s) 374, 431, 503, 508
BseNI ACTGG 3 cut(s) 85, 149, 513
BsePI GCGCGC 1 cut(s) 225
BseXI GCAGC 1 cut(s) 82
Bsh1236I CGCG 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 279
BshVI ATCGAT 1 cut(s) 279
BsiEI CGRYCG 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 430
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 4 cut(s) 137, 296, 442, 517
BslI CCNNNNNNNGG 2 cut(s) 406, 474
BsmAI GTCTC 3 cut(s) 236, 255, 436
BsmFI GGGAC 4 cut(s) 137, 296, 442, 517
Bso31I GGTCTC 1 cut(s) 255
BsoBI CYCGRG 1 cut(s) 430
Bsp119I TTCGAA 1 cut(s) 106
Bsp1407I TGTACA 1 cut(s) 354
Bsp143I GATC 1 cut(s) 276
Bsp1720I GCTNAGC 1 cut(s) 494
Bsp19I CCATGG 1 cut(s) 125
BspACI CCGC 2 cut(s) 39, 140
BspCNI CTCAG 4 cut(s) 375, 432, 502, 507
BspDI ATCGAT 1 cut(s) 279
BspFNI CGCG 1 cut(s) 227
BspMAI CTGCAG 1 cut(s) 200
BspT104I TTCGAA 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 255
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 3 cut(s) 85, 149, 513
BssECI CCNNGG 3 cut(s) 125, 499, 500
BssHII GCGCGC 1 cut(s) 225
BssMI GATC 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 1 cut(s) 424
Bst6I CTCTTC 2 cut(s) 22, 28
BstAUI TGTACA 1 cut(s) 354
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 138, 227
BstDEI CTNAG 4 cut(s) 383, 440, 489, 494
BstDSI CCRYGG 1 cut(s) 125
BstFNI CGCG 1 cut(s) 227
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 4 cut(s) 227, 229, 268, 530
BstKTI GATC 1 cut(s) 279
BstMAI GTCTC 3 cut(s) 236, 255, 436
BstMBI GATC 1 cut(s) 276
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 1 cut(s) 196
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 285
Bsu15I ATCGAT 1 cut(s) 279
BsuI GTATCC 1 cut(s) 364
BsuTUI ATCGAT 1 cut(s) 279
BtgI CCRYGG 1 cut(s) 125
Cac8I GCNNGC 2 cut(s) 138, 227
CfoI GCGC 4 cut(s) 227, 229, 268, 530
Cfr13I GGNCC 1 cut(s) 208
ClaI ATCGAT 1 cut(s) 279
Csp6I GTAC 2 cut(s) 299, 355
CviAII CATG 4 cut(s) 126, 222, 308, 413
CviQI GTAC 2 cut(s) 299, 355
DdeI CTNAG 4 cut(s) 383, 440, 489, 494
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
Eam1104I CTCTTC 2 cut(s) 22, 28
EarI CTCTTC 2 cut(s) 22, 28
Eco130I CCWWGG 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 255
Eco32I GATATC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 499
EcoRV GATATC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 4 cut(s) 129, 225, 311, 416
FaiI YATR 7 cut(s) 127, 223, 239, 309, 353, 402, 414
FaqI GGGAC 4 cut(s) 137, 296, 442, 517
FatI CATG 4 cut(s) 125, 221, 307, 412
Fnu4HI GCNGC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 71
GlaI GCGC 4 cut(s) 226, 228, 267, 529
GluI GCNGC 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 239
HaeII RGCGCY 1 cut(s) 269
HapII CCGG 1 cut(s) 230
HhaI GCGC 4 cut(s) 227, 229, 268, 530
Hin1II CATG 4 cut(s) 129, 225, 311, 416
Hin6I GCGC 4 cut(s) 225, 227, 266, 528
HinP1I GCGC 4 cut(s) 225, 227, 266, 528
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 5 cut(s) 5, 171, 244, 385, 428
HpaII CCGG 1 cut(s) 230
HphI GGTGA 3 cut(s) 74, 315, 330
Hpy166II GTNNAC 2 cut(s) 184, 427
Hpy188I TCNGA 4 cut(s) 276, 370, 390, 441
Hpy188III TCNNGA 2 cut(s) 211, 256
Hpy8I GTNNAC 2 cut(s) 184, 427
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 4 cut(s) 40, 279, 324, 400
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4V TGCA 4 cut(s) 146, 198, 412, 454
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 4 cut(s) 383, 440, 489, 494
Hsp92II CATG 4 cut(s) 129, 225, 311, 416
HspAI GCGC 4 cut(s) 225, 227, 266, 528
Kzo9I GATC 1 cut(s) 276
LmnI GCTCC 2 cut(s) 202, 379
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 381
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 8 cut(s) 9, 15, 105, 142, 285, 309, 312, 456
MluCI AATT 3 cut(s) 54, 330, 448
MlyI GAGTC 3 cut(s) 238, 394, 422
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 6 cut(s) 25, 31, 40, 227, 405, 498
MroXI GAANNNNTTC 1 cut(s) 112
MseI TTAA 2 cut(s) 192, 538
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 501
MvaI CCWGG 1 cut(s) 501
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 222
NcoI CCATGG 1 cut(s) 125
NdeII GATC 1 cut(s) 276
NlaIII CATG 4 cut(s) 129, 225, 311, 416
NspI RCATGY 1 cut(s) 225
NspV TTCGAA 1 cut(s) 106
PaeR7I CTCGAG 1 cut(s) 430
PasI CCCWGGG 1 cut(s) 500
PauI GCGCGC 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 428
PdmI GAANNNNTTC 1 cut(s) 112
PfeI GAWTC 2 cut(s) 5, 171
PflFI GACNNNGTC 2 cut(s) 247, 508
PkrI GCNGC 1 cut(s) 72
Ple19I CGATCG 1 cut(s) 279
PleI GAGTC 3 cut(s) 238, 393, 422
PpsI GAGTC 3 cut(s) 238, 393, 422
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspPI GGNCC 1 cut(s) 208
PspXI VCTCGAGB 1 cut(s) 430
PstI CTGCAG 1 cut(s) 200
PsyI GACNNNGTC 2 cut(s) 247, 508
PteI GCGCGC 1 cut(s) 225
PvuI CGATCG 1 cut(s) 279
RsaI GTAC 2 cut(s) 300, 356
RsaNI GTAC 2 cut(s) 299, 355
SaqAI TTAA 2 cut(s) 192, 538
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 1 cut(s) 276
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 3 cut(s) 238, 394, 422
ScrFI CCNGG 1 cut(s) 501
SetI ASST 7 cut(s) 75, 207, 338, 384, 411, 437, 495
SfaNI GCATC 1 cut(s) 381
SfcI CTRYAG 1 cut(s) 196
Sfr274I CTCGAG 1 cut(s) 430
SfuI TTCGAA 1 cut(s) 106
SinI GGWCC 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 430
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
Sse9I AATT 3 cut(s) 54, 330, 448
SsiI CCGC 2 cut(s) 39, 140
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 1 cut(s) 125
TaaI ACNGT 1 cut(s) 424
TaqI TCGA 5 cut(s) 106, 119, 279, 431, 519
TaqII GACCGA 1 cut(s) 237
TasI AATT 3 cut(s) 54, 330, 448
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 2 cut(s) 5, 171
Tru1I TTAA 2 cut(s) 192, 538
Tru9I TTAA 2 cut(s) 192, 538
TseI GCWGC 1 cut(s) 70
TspGWI ACGGA 1 cut(s) 275
Tth111I GACNNNGTC 2 cut(s) 247, 508
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 1 cut(s) 448
XceI RCATGY 1 cut(s) 225
XhoI CTCGAG 1 cut(s) 430
XmnI GAANNNNTTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.