AT4G37710

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008509
Physical Location & Seq
Forward (+)
17718118 .. 17718771
654 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37710.1

Sequence Viewer

Length: 372 bp
ATGGAAGCAACATCACAACAATTTATGTCTCAGAGTTACCTTAACGCTCAAGAAACCACCACAAGGGCAACGAAAAATTACCTAACTTCGCTCCATTCGACACGTAAACAACCTTCAAAGCCCTTGAAGAGGCCTGCAATATCATCACCTTTGAATCCAATGCATCCTCATGTCTACCGAGTCGAGCCAGTAAACTTCAAAGTGTTGGTTCAGAGGCTAACCGGTGCACCTGAGCACGAGACTGTGCAGGCTAAACCGCTCAAGACTTCGGATGATGCAGCAAAGCAGAGTTCTTCGTCATTTGCGTTTGATCCATCATCATCTTGGGGAGATTTCTCATTCCAAAATCCTGCAAATATTTCCAGATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

123

Amino Acids

13.81

Weight (kDa)

9.75

Isoelectric Point (pI)

64.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 53 - 79 2e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 259
AccI GTMKAC 1 cut(s) 174
AciI CCGC 1 cut(s) 257
AclWI GGATC 1 cut(s) 305
AfiI CCNNNNNNNGG 2 cut(s) 63, 129
AflIII ACRYGT 1 cut(s) 101
AgeI ACCGGT 1 cut(s) 221
AgsI TTSAA 4 cut(s) 117, 127, 154, 199
Alw21I GWGCWC 2 cut(s) 229, 237
Alw26I GTCTC 2 cut(s) 33, 233
Alw44I GTGCAC 1 cut(s) 225
AlwI GGATC 1 cut(s) 305
AoxI GGCC 1 cut(s) 131
ApaLI GTGCAC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 278
AsiGI ACCGGT 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 138
BaeGI GKGCMC 1 cut(s) 229
BarI GAAGNNNNNNTAC 2 cut(s) 97, 129
BauI CACGAG 1 cut(s) 236
Bbv12I GWGCWC 2 cut(s) 229, 237
BbvI GCAGC 1 cut(s) 290
BccI CCATC 2 cut(s) 322, 360
BcoDI GTCTC 2 cut(s) 33, 233
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
BmsI GCATC 2 cut(s) 172, 265
Bpu10I CCTNAGC 1 cut(s) 231
BpuEI CTTGAG 2 cut(s) 33, 245
BsaAI YACGTR 1 cut(s) 104
BsaWI WCCGGW 1 cut(s) 221
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 129
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 188
BseGI GGATG 2 cut(s) 163, 277
BseLI CCNNNNNNNGG 2 cut(s) 63, 129
BseMII CTCAG 2 cut(s) 44, 222
BseNI ACTGG 1 cut(s) 188
BseSI GKGCMC 1 cut(s) 229
BseXI GCAGC 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 266
BshFI GGCC 1 cut(s) 133
BshTI ACCGGT 1 cut(s) 221
BsiHKAI GWGCWC 2 cut(s) 229, 237
BsiSI CCGG 1 cut(s) 222
BslI CCNNNNNNNGG 2 cut(s) 63, 129
BsmAI GTCTC 2 cut(s) 33, 233
BsnI GGCC 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 229, 237
Bsp143I GATC 1 cut(s) 310
BspACI CCGC 1 cut(s) 257
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 2 cut(s) 43, 223
BspPI GGATC 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 221
BssMI GATC 1 cut(s) 310
BssSI CACGAG 1 cut(s) 236
Bst2BI CACGAG 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 122
BstBAI YACGTR 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 135, 249
BstDEI CTNAG 2 cut(s) 30, 231
BstENI CCTNNNNNAGG 1 cut(s) 127
BstF5I GGATG 2 cut(s) 163, 277
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 2 cut(s) 33, 233
BstMBI GATC 1 cut(s) 310
BstSLI GKGCMC 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 133
BtsCI GGATG 2 cut(s) 163, 277
Cac8I GCNNGC 2 cut(s) 135, 249
Cfr10I RCCGGY 1 cut(s) 221
CspAI ACCGGT 1 cut(s) 221
CviAII CATG 1 cut(s) 170
CviJI RGCY 5 cut(s) 121, 133, 187, 217, 251
CviKI_1 RGCY 5 cut(s) 121, 133, 187, 217, 251
DdeI CTNAG 2 cut(s) 30, 231
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco147I AGGCCT 1 cut(s) 133
EcoNI CCTNNNNNAGG 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 165
FaeI CATG 1 cut(s) 173
FaiI YATR 2 cut(s) 26, 171
FatI CATG 1 cut(s) 169
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 2 cut(s) 150, 284
Fsp4HI GCNGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 279
HaeIII GGCC 1 cut(s) 133
HapII CCGG 1 cut(s) 222
Hin1II CATG 1 cut(s) 173
HinfI GANTC 2 cut(s) 154, 180
HpaII CCGG 1 cut(s) 222
HphI GGTGA 1 cut(s) 138
Hpy166II GTNNAC 4 cut(s) 107, 175, 193, 227
Hpy188I TCNGA 3 cut(s) 33, 213, 271
Hpy188III TCNNGA 3 cut(s) 50, 262, 363
Hpy8I GTNNAC 4 cut(s) 107, 175, 193, 227
HpyAV CCTTC 1 cut(s) 123
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 6 cut(s) 137, 163, 227, 247, 278, 353
HpyF3I CTNAG 2 cut(s) 30, 231
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 1 cut(s) 173
Kzo9I GATC 1 cut(s) 310
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 6 cut(s) 147, 201, 233, 235, 243, 363
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 2 cut(s) 172, 265
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 35
MalI GATC 1 cut(s) 312
MbiI CCGCTC 1 cut(s) 259
MboI GATC 1 cut(s) 310
MboII GAAGA 2 cut(s) 139, 285
MhlI GDGCHC 2 cut(s) 229, 237
MluCI AATT 2 cut(s) 20, 76
MlyI GAGTC 1 cut(s) 189
MnlI CCTC 3 cut(s) 123, 177, 207
Mph1103I ATGCAT 1 cut(s) 165
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 168
MspI CCGG 1 cut(s) 222
NdeII GATC 1 cut(s) 310
NlaIII CATG 1 cut(s) 173
NsiI ATGCAT 1 cut(s) 165
PceI AGGCCT 1 cut(s) 133
PcsI WCGNNNNNNNCGW 2 cut(s) 95, 302
PfeI GAWTC 1 cut(s) 154
PinAI ACCGGT 1 cut(s) 221
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Ppu21I YACGTR 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 168
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 1 cut(s) 310
SchI GAGTC 1 cut(s) 189
SduI GDGCHC 2 cut(s) 229, 237
SetI ASST 6 cut(s) 42, 84, 106, 115, 151, 232
SfaNI GCATC 2 cut(s) 172, 265
SmiMI CAYNNNNRTG 1 cut(s) 168
SmlI CTYRAG 2 cut(s) 48, 260
SmoI CTYRAG 2 cut(s) 48, 260
Sse9I AATT 2 cut(s) 20, 76
SseBI AGGCCT 1 cut(s) 133
SsiI CCGC 1 cut(s) 257
SspI AATATT 1 cut(s) 358
StuI AGGCCT 1 cut(s) 133
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 106
TaqI TCGA 2 cut(s) 98, 183
TasI AATT 2 cut(s) 20, 76
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TseI GCWGC 1 cut(s) 278
VneI GTGCAC 1 cut(s) 225
XagI CCTNNNNNAGG 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 1 cut(s) 321
XmiI GTMKAC 1 cut(s) 174
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.