Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008509

Physical Location & Seq

Genomic Coordinates Reverse (-)

22498702 .. 22499601

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G218300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAATCTCATTTCTCTTCTTCTTCAGCCTCTTCCACCACCACTTACTTGTCCCAAACCATGCAACCAACAAAGGGTTTAATCTCAACTTCAAATTCACTTCCTTATCACCAATCTTCACTTCACTCTGTTCGGAGGCCTTCTTCGAAGCCATGGCGGAAGCCAGCGGTGGCTCCGCTGCCGCCGACCCCGCCAAGAATCTACAAAGTGGACCCCATTAACTTCAAAGACCTTGTTCAAAGCCTCACCAGCGGGCCGGGGTTTTTGGAGGCTCGATCTCTGCAGAGCGTTGCACCGGCGCCGATTGATGTTCAGAGAAATGCCTCTGTTCTGAACAATGTTCTTTCTTCTTCTTCTGCTTCTTCTCCGGCATCGAAAATTATTTCACCATTTTCAGCCATGTACAAGGACTTGGCTGAAACACTGGAAATGAGTTCTACACCTCATCATCAGAAGGCGCATGATAGCAATGTGGACCCTAGTTATCTGAGTCTGAACTTGCAGTCACCTTCTTCCCATCATTGGTTTTCTTTTCCTCTGCTCAGCCCAGGAACTATGTCCAGTCTGGAACAGAGCACAATGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

196

Amino Acids

21.14

Weight (kDa)

9.26

Isoelectric Point (pI)

71.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22880 AT4G37710 AT4G37710
fragaria_vesca	FvH4_1g18020
malus_domestica	MD02G1188600.v1.1 MD02G1188700.v1.1
prunus_persica	Prupe.6G218200_v2.0.a1 Prupe.6G218300_v2.0.a1
pyrus_communis	pycom02g15290 pycom02g15300 pycom15g26200 pycom17g23970
rosa_chinensis	RchiOBHm_Chr2g0108511
rosa_laevigata	RLG00000017674
rosa_multiflora	Rmu_co8481527.1_g000001 Rmu_sc0007574.1_g000014
rosa_roxburghii	Rroxscaffold_2G00135070
rosa_rugosa	Rorug02G0153800
rosa_samantha	Rh2AG202800 Rh2BG215800 Rh2CG206800 Rh2DG210000
rosa_wichuraiana	Rw2G016200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	298
AciI	CCGC	6 cut(s)	157, 167, 176, 182, 191, 252
AcsI	RAATTY	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	9
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	2 cut(s)	74, 522
AgsI	TTSAA	3 cut(s)	93, 226, 239
AjnI	CCWGG	1 cut(s)	547
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
Alw21I	GWGCWC	1 cut(s)	578
AoxI	GGCC	2 cut(s)	137, 254
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	94
AspLEI	GCGC	2 cut(s)	301, 460
AspS9I	GGNCC	3 cut(s)	211, 254, 475
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	4 cut(s)	101, 238, 378, 498
AsuII	TTCGAA	1 cut(s)	146
AvaII	GGWCC	2 cut(s)	211, 475
BanI	GGYRCC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	578
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	1 cut(s)	525
BciT130I	CCWGG	1 cut(s)	549
BcnI	CCSGG	1 cut(s)	258
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	1 cut(s)	281
BfoI	RGCGCY	1 cut(s)	302
BisI	GCNGC	2 cut(s)	179, 182
BlpI	GCTNAGC	1 cut(s)	542
BlsI	GCNGC	2 cut(s)	180, 183
Bme1390I	CCNGG	2 cut(s)	258, 549
Bme18I	GGWCC	2 cut(s)	211, 475
BmgT120I	GGNCC	3 cut(s)	211, 254, 475
BmiI	GGNNCC	4 cut(s)	174, 213, 300, 477
BmrFI	CCNGG	2 cut(s)	258, 549
BmsI	GCATC	1 cut(s)	380
Bpu1102I	GCTNAGC	1 cut(s)	542
Bpu14I	TTCGAA	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	299
BsaJI	CCNNGG	3 cut(s)	152, 257, 547
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 522
Bse118I	RCCGGY	1 cut(s)	295
Bse1I	ACTGG	2 cut(s)	429, 561
Bse3DI	GCAATG	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	3 cut(s)	152, 257, 547
BseLI	CCNNNNNNNGG	2 cut(s)	74, 522
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	2 cut(s)	479, 556
BseNI	ACTGG	2 cut(s)	429, 561
BseXI	GCAGC	1 cut(s)	165
BshFI	GGCC	2 cut(s)	139, 256
BshNI	GGYRCC	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	578
BsiSI	CCGG	3 cut(s)	257, 296, 368
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	2 cut(s)	74, 522
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	2 cut(s)	139, 256
Bsp119I	TTCGAA	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	578
Bsp1407I	TGTACA	1 cut(s)	402
Bsp143I	GATC	1 cut(s)	275
Bsp1720I	GCTNAGC	1 cut(s)	542
Bsp19I	CCATGG	1 cut(s)	152
BspACI	CCGC	6 cut(s)	157, 167, 176, 182, 191, 252
BspANI	GGCC	2 cut(s)	139, 256
BspCNI	CTCAG	2 cut(s)	480, 555
BspLI	GGNNCC	4 cut(s)	174, 213, 300, 477
BspMAI	CTGCAG	1 cut(s)	285
BspT104I	TTCGAA	1 cut(s)	146
BspT107I	GGYRCC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	475
BsrFI	RCCGGY	1 cut(s)	295
BsrGI	TGTACA	1 cut(s)	402
BsrI	ACTGG	2 cut(s)	429, 561
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	3 cut(s)	152, 257, 547
BssMI	GATC	1 cut(s)	275
BssNI	GRCGYC	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	549
Bst6I	CTCTTC	2 cut(s)	22, 37
BstACI	GRCGYC	1 cut(s)	299
BstAUI	TGTACA	1 cut(s)	402
BstBI	TTCGAA	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	165, 254
BstDEI	CTNAG	2 cut(s)	488, 542
BstDSI	CCRYGG	1 cut(s)	152
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	2 cut(s)	301, 460
BstKTI	GATC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 249
BstNI	CCWGG	1 cut(s)	549
BstSCI	CCNGG	2 cut(s)	256, 547
BstSFI	CTRYAG	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	139, 256
BtgI	CCRYGG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	422
Cac8I	GCNNGC	2 cut(s)	165, 254
CfoI	GCGC	2 cut(s)	301, 460
Cfr10I	RCCGGY	1 cut(s)	295
Cfr13I	GGNCC	3 cut(s)	211, 254, 475
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	4 cut(s)	61, 153, 400, 461
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	2 cut(s)	488, 542
DinI	GGCGCC	1 cut(s)	300
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
Eam1104I	CTCTTC	2 cut(s)	22, 37
EarI	CTCTTC	2 cut(s)	22, 37
EciI	GGCGGA	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	152
Eco147I	AGGCCT	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	211, 475
Eco57I	CTGAAG	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	547
EcoT14I	CCWWGG	1 cut(s)	152
EgeI	GGCGCC	1 cut(s)	300
EheI	GGCGCC	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	4 cut(s)	64, 156, 403, 464
FaiI	YATR	5 cut(s)	62, 154, 401, 462, 557
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	4 cut(s)	60, 152, 399, 460
FauI	CCCGC	2 cut(s)	198, 245
Fnu4HI	GCNGC	2 cut(s)	179, 182
Fsp4HI	GCNGC	2 cut(s)	179, 182
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	2 cut(s)	300, 459
GluI	GCNGC	2 cut(s)	179, 182
HaeII	RGCGCY	1 cut(s)	302
HaeIII	GGCC	2 cut(s)	139, 256
HapII	CCGG	3 cut(s)	257, 296, 368
HhaI	GCGC	2 cut(s)	301, 460
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	4 cut(s)	64, 156, 403, 464
Hin6I	GCGC	2 cut(s)	299, 458
HinP1I	GCGC	2 cut(s)	299, 458
HinfI	GANTC	3 cut(s)	5, 198, 490
HpaII	CCGG	3 cut(s)	257, 296, 368
HphI	GGTGA	4 cut(s)	101, 238, 378, 498
Hpy166II	GTNNAC	2 cut(s)	211, 475
Hpy188I	TCNGA	6 cut(s)	135, 315, 333, 453, 489, 495
Hpy188III	TCNNGA	1 cut(s)	566
Hpy8I	GTNNAC	2 cut(s)	211, 475
HpyAV	CCTTC	3 cut(s)	150, 448, 519
HpyCH4V	TGCA	4 cut(s)	64, 283, 293, 502
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 249
HpyF3I	CTNAG	2 cut(s)	488, 542
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	4 cut(s)	64, 156, 403, 464
HspAI	GCGC	2 cut(s)	299, 458
KasI	GGCGCC	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	275
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	1 cut(s)	380
MaeI	CTAG	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	504
MalI	GATC	1 cut(s)	277
MboI	GATC	1 cut(s)	275
MhlI	GDGCHC	1 cut(s)	578
MluCI	AATT	2 cut(s)	94, 378
Mly113I	GGCGCC	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	499
MnlI	CCTC	7 cut(s)	40, 129, 254, 262, 334, 453, 546
MseI	TTAA	2 cut(s)	80, 219
MspA1I	CMGCKG	3 cut(s)	167, 178, 252
MspI	CCGG	3 cut(s)	257, 296, 368
MspR9I	CCNGG	2 cut(s)	258, 549
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	2 cut(s)	190, 249
NarI	GGCGCC	1 cut(s)	299
NciI	CCSGG	1 cut(s)	258
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	1 cut(s)	275
NlaIII	CATG	4 cut(s)	64, 156, 403, 464
NlaIV	GGNNCC	4 cut(s)	174, 213, 300, 477
NmuCI	GTSAC	1 cut(s)	504
NspV	TTCGAA	1 cut(s)	146
PceI	AGGCCT	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	5, 198
PkrI	GCNGC	2 cut(s)	180, 183
PleI	GAGTC	1 cut(s)	498
PluTI	GGCGCC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	4 cut(s)	174, 213, 300, 477
PspPI	GGNCC	3 cut(s)	211, 254, 475
PstI	CTGCAG	1 cut(s)	285
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	2 cut(s)	80, 219
SatI	GCNGC	2 cut(s)	179, 182
Sau3AI	GATC	1 cut(s)	275
Sau96I	GGNCC	3 cut(s)	211, 254, 475
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	2 cut(s)	258, 549
SduI	GDGCHC	1 cut(s)	578
SetI	ASST	3 cut(s)	234, 445, 511
SfaNI	GCATC	1 cut(s)	380
SfcI	CTRYAG	1 cut(s)	281
SfoI	GGCGCC	1 cut(s)	300
SfuI	TTCGAA	1 cut(s)	146
SgrAI	CRCCGGYG	1 cut(s)	295
SinI	GGWCC	2 cut(s)	211, 475
Sse9I	AATT	2 cut(s)	94, 378
SseBI	AGGCCT	1 cut(s)	139
SsiI	CCGC	6 cut(s)	157, 167, 176, 182, 191, 252
SspDI	GGCGCC	1 cut(s)	298
SspMI	CTAG	1 cut(s)	480
StuI	AGGCCT	1 cut(s)	139
StyD4I	CCNGG	2 cut(s)	256, 547
StyI	CCWWGG	1 cut(s)	152
TaqI	TCGA	3 cut(s)	146, 274, 374
TasI	AATT	2 cut(s)	94, 378
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	2 cut(s)	5, 198
Tru1I	TTAA	2 cut(s)	80, 219
Tru9I	TTAA	2 cut(s)	80, 219
TscAI	CASTG	1 cut(s)	429
TseFI	GTSAC	1 cut(s)	504
TseI	GCWGC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	504
TspRI	CASTG	1 cut(s)	429
VpaK11BI	GGWCC	2 cut(s)	211, 475
XapI	RAATTY	1 cut(s)	94
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.