Rorug02G0153800

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008509
Physical Location & Seq
Forward (+)
13615227 .. 13616823
1597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0153800.1

Sequence Viewer

Length: 1098 bp
ATGAGCTGTGTGAATCTGAGCTCATGGGGCCAAACCTGTTCAATGTTGAACCGATCCAGATCCCCATCTCTCCACCTCCTCCACAGCCTCAACACCCGACCCGTTTCCTTCGCTTCTCCGAAAGGACGCCGACCCAGTTCCGTCACGGCAACCCTGACCAAGCAGGAGACTGTGAAGGAGCAGCGGAAGGAAGAGGAATCCGGGAAGCCCAGTTTCAATTTCAAGACCTACATGGTGGAGAAGGCCGAGTCCGTCAACCGGGCCTTAGACGCCGCCGTTTCGCTGAAAGACCCGATTACGATCCACGAAGCGATGCGGTACTCTTTGCTCGCCGGAGGCAAAAGGGTCCGACCCGTTCTGTGTGTCGCGGCGTGCGAGCTCGTCGGAGGGTCTGAGTCCCTCGCCATGCCGGCGGCCTGCGCCGTCGAGATGATCCACACCATGTCGTTGATCCACGACGACTTGCCGTGCATGGATAACGACGACCTCCGCCGCGGGAAGCCCACCAACCACAAGGTTTTCGGCGAAGACGTCGCCGTTTTGGCCGGCGACGCGCTTCTATCATTCGCGTTCGAGCACCTCGCCGTCTCCACCGTCGGCGTCGAGCCTTCTAGAATCGTCCGAGCCGTGGAGGAGCTTGCCCGGTCAATCGGGTCGGAGGGATTGGTGGCGGGTCAAGTCGTGGATATCCACTCCGAGGGGTTATCCGATGTGGGACTGGAGCACCTGGAGTACATACACCTCCACAAAACTGCGGCTCTTCTTGAATGTGCAGTTGTTCTCGGGTCGATTTTGGGAGGCGGGTCGGACTCGGAAATCGAAAAGCTCCGGACTTTTGCGAGGTACATTGGGCTGTTGTTTCAAGTTGTGGATGACATTCTGGATGTGACGAAGTCTTCACAGGAATTGGGGAAGACTGCTGGGAAGGACTTGGTGGCTGATAAGGTGACTTATCCTAAGCTAATGGGGATTGAGAAATCGAAGGAATTTGCGGAGAAACTTAATAGGGATGCACAAGAACAGCTCGTCGGATTCGACCCGGAAAAGGCTGCTCCTTTGATTGCTTTGGCTAATTACATTGCTTACAGGCAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

365

Amino Acids

39.63

Weight (kDa)

5.92

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
polyprenyl_synt PF00348 101 - 334 4.7e-60 Polyprenyl synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 534
AccII CGCG 4 cut(s) 368, 495, 554, 569
AccIII TCCGGA 1 cut(s) 828
AclWI GGATC 5 cut(s) 48, 54, 295, 427, 445
AcoI YGGCCR 1 cut(s) 543
AcsI RAATTY 1 cut(s) 986
AcyI GRCGYC 4 cut(s) 127, 270, 531, 600
AfaI GTAC 3 cut(s) 320, 734, 845
AfiI CCNNNNNNNGG 4 cut(s) 258, 628, 697, 1045
AgsI TTSAA 6 cut(s) 42, 49, 217, 223, 767, 863
AjnI CCWGG 1 cut(s) 726
AluBI AGCT 7 cut(s) 6, 21, 379, 637, 826, 961, 1024
AluI AGCT 7 cut(s) 6, 21, 379, 637, 826, 961, 1024
Alw21I GWGCWC 4 cut(s) 23, 381, 579, 726
Alw26I GTCTC 2 cut(s) 161, 592
AlwI GGATC 5 cut(s) 48, 54, 295, 427, 445
Ama87I CYCGRG 1 cut(s) 782
Aor13HI TCCGGA 1 cut(s) 828
AoxI GGCC 5 cut(s) 28, 243, 261, 414, 543
ApeKI GCWGC 2 cut(s) 181, 1049
ApoI RAATTY 1 cut(s) 986
AspLEI GCGC 2 cut(s) 422, 556
AspS9I GGNCC 3 cut(s) 28, 261, 346
AsuC2I CCSGG 4 cut(s) 202, 260, 643, 1040
AsuHPI GGTGA 1 cut(s) 958
AvaI CYCGRG 1 cut(s) 782
AvaII GGWCC 1 cut(s) 346
BanII GRGCYC 2 cut(s) 23, 381
BbsI GAAGAC 3 cut(s) 534, 888, 920
Bbv12I GWGCWC 4 cut(s) 23, 381, 579, 726
BbvI GCAGC 2 cut(s) 193, 1036
BccI CCATC 1 cut(s) 73
BceAI ACGGC 7 cut(s) 162, 260, 407, 451, 521, 569, 611
BciT130I CCWGG 1 cut(s) 728
BcnI CCSGG 4 cut(s) 202, 260, 643, 1040
BcoDI GTCTC 2 cut(s) 161, 592
BfaI CTAG 1 cut(s) 612
BglI GCCNNNNNGGC 2 cut(s) 410, 542
BisI GCNGC 7 cut(s) 182, 273, 369, 414, 493, 756, 1050
BlsI GCNGC 7 cut(s) 183, 274, 370, 415, 494, 757, 1051
Bme1390I CCNGG 5 cut(s) 202, 260, 643, 728, 1040
Bme18I GGWCC 1 cut(s) 346
BmeT110I CYCGRG 1 cut(s) 782
BmgT120I GGNCC 3 cut(s) 28, 261, 346
BmiI GGNNCC 2 cut(s) 29, 347
BmrFI CCNGG 5 cut(s) 202, 260, 643, 728, 1040
BmrI ACTGGG 2 cut(s) 129, 204
BmsI GCATC 2 cut(s) 303, 1000
BmuI ACTGGG 2 cut(s) 129, 204
BpiI GAAGAC 3 cut(s) 534, 888, 920
BpmI CTGGAG 2 cut(s) 740, 749
Bpu10I CCTNAGC 1 cut(s) 957
BpuMI CCSGG 4 cut(s) 202, 260, 643, 1040
BsaBI GATNNNNATC 3 cut(s) 58, 64, 299
BsaHI GRCGYC 4 cut(s) 127, 270, 531, 600
BsaJI CCNNGG 3 cut(s) 493, 627, 696
BsaWI WCCGGW 1 cut(s) 828
Bsc4I CCNNNNNNNGG 4 cut(s) 258, 628, 697, 1045
Bse118I RCCGGY 2 cut(s) 409, 545
Bse1I ACTGG 3 cut(s) 135, 210, 723
Bse3DI GCAATG 1 cut(s) 1077
Bse8I GATNNNNATC 3 cut(s) 58, 64, 299
BseAI TCCGGA 1 cut(s) 828
BseBI CCWGG 1 cut(s) 728
BseDI CCNNGG 3 cut(s) 493, 627, 696
BseGI GGATG 3 cut(s) 877, 889, 1015
BseJI GATNNNNATC 3 cut(s) 58, 64, 299
BseLI CCNNNNNNNGG 4 cut(s) 258, 628, 697, 1045
BseMI GCAATG 1 cut(s) 1077
BseMII CTCAG 2 cut(s) 8, 384
BseNI ACTGG 3 cut(s) 135, 210, 723
BseRI GAGGAG 2 cut(s) 68, 647
BseXI GCAGC 2 cut(s) 193, 1036
BseYI CCCAGC 1 cut(s) 920
BsgI GTGCAG 1 cut(s) 792
Bsh1236I CGCG 4 cut(s) 368, 495, 554, 569
BshFI GGCC 5 cut(s) 30, 245, 263, 416, 545
BsiHKAI GWGCWC 4 cut(s) 23, 381, 579, 726
BsiHKCI CYCGRG 1 cut(s) 782
BsiSI CCGG 8 cut(s) 201, 259, 333, 410, 546, 643, 829, 1040
BslFI GGGAC 2 cut(s) 382, 729
BslI CCNNNNNNNGG 4 cut(s) 258, 628, 697, 1045
BsmAI GTCTC 2 cut(s) 161, 592
BsmBI CGTCTC 1 cut(s) 592
BsmFI GGGAC 2 cut(s) 382, 729
BsnI GGCC 5 cut(s) 30, 245, 263, 416, 545
BsoBI CYCGRG 1 cut(s) 782
Bsp1286I GDGCHC 4 cut(s) 23, 381, 579, 726
Bsp13I TCCGGA 1 cut(s) 828
Bsp143I GATC 5 cut(s) 53, 59, 300, 432, 450
BspANI GGCC 5 cut(s) 30, 245, 263, 416, 545
BspCNI CTCAG 2 cut(s) 9, 385
BspEI TCCGGA 1 cut(s) 828
BspFNI CGCG 4 cut(s) 368, 495, 554, 569
BspLI GGNNCC 2 cut(s) 29, 347
BspPI GGATC 5 cut(s) 48, 54, 295, 427, 445
BspQI GCTCTTC 1 cut(s) 765
BsrDI GCAATG 1 cut(s) 1077
BsrFI RCCGGY 2 cut(s) 409, 545
BsrI ACTGG 3 cut(s) 135, 210, 723
BssAI RCCGGY 2 cut(s) 409, 545
BssECI CCNNGG 3 cut(s) 493, 627, 696
BssMI GATC 5 cut(s) 53, 59, 300, 432, 450
BssNI GRCGYC 4 cut(s) 127, 270, 531, 600
Bst2UI CCWGG 1 cut(s) 728
Bst4CI ACNGT 2 cut(s) 172, 595
Bst6I CTCTTC 2 cut(s) 186, 765
BstACI GRCGYC 4 cut(s) 127, 270, 531, 600
BstC8I GCNNGC 7 cut(s) 330, 373, 377, 411, 418, 547, 639
BstDEI CTNAG 4 cut(s) 17, 265, 393, 957
BstDSI CCRYGG 2 cut(s) 493, 627
BstF5I GGATG 3 cut(s) 877, 889, 1015
BstFNI CGCG 4 cut(s) 368, 495, 554, 569
BstHHI GCGC 2 cut(s) 422, 556
BstKTI GATC 5 cut(s) 56, 62, 303, 435, 453
BstMAI GTCTC 2 cut(s) 161, 592
BstMBI GATC 5 cut(s) 53, 59, 300, 432, 450
BstMWI GCNNNNNNNGC 6 cut(s) 27, 269, 410, 419, 542, 551
BstNI CCWGG 1 cut(s) 728
BstSCI CCNGG 5 cut(s) 200, 258, 641, 726, 1038
BstUI CGCG 4 cut(s) 368, 495, 554, 569
BstV1I GCAGC 2 cut(s) 193, 1036
BstV2I GAAGAC 3 cut(s) 534, 888, 920
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
BsuRI GGCC 5 cut(s) 30, 245, 263, 416, 545
BtgI CCRYGG 2 cut(s) 493, 627
BtgZI GCGATG 1 cut(s) 326
BtsCI GGATG 3 cut(s) 877, 889, 1015
Cac8I GCNNGC 7 cut(s) 330, 373, 377, 411, 418, 547, 639
CfoI GCGC 2 cut(s) 422, 556
Cfr10I RCCGGY 2 cut(s) 409, 545
Cfr13I GGNCC 3 cut(s) 28, 261, 346
Cfr42I CCGCGG 1 cut(s) 496
CseI GACGC 4 cut(s) 135, 278, 560, 589
Csp6I GTAC 3 cut(s) 319, 733, 844
CviAII CATG 5 cut(s) 24, 232, 406, 442, 472
CviQI GTAC 3 cut(s) 319, 733, 844
DdeI CTNAG 4 cut(s) 17, 265, 393, 957
DpnI GATC 5 cut(s) 55, 61, 302, 434, 452
DpnII GATC 5 cut(s) 53, 59, 300, 432, 450
EaeI YGGCCR 1 cut(s) 543
Eam1104I CTCTTC 2 cut(s) 186, 765
EarI CTCTTC 2 cut(s) 186, 765
EciI GGCGGA 1 cut(s) 479
Ecl136II GAGCTC 2 cut(s) 21, 379
Eco24I GRGCYC 2 cut(s) 23, 381
Eco32I GATATC 1 cut(s) 688
Eco47I GGWCC 1 cut(s) 346
Eco53kI GAGCTC 2 cut(s) 21, 379
Eco88I CYCGRG 1 cut(s) 782
EcoICRI GAGCTC 2 cut(s) 21, 379
EcoRII CCWGG 1 cut(s) 726
EcoRV GATATC 1 cut(s) 688
EcoT38I GRGCYC 2 cut(s) 23, 381
Esp3I CGTCTC 1 cut(s) 592
FaeI CATG 5 cut(s) 27, 235, 409, 445, 475
FaiI YATR 6 cut(s) 25, 233, 407, 443, 473, 737
FaqI GGGAC 2 cut(s) 382, 729
FatI CATG 5 cut(s) 23, 231, 405, 441, 471
FauI CCCGC 3 cut(s) 488, 664, 794
Fnu4HI GCNGC 7 cut(s) 182, 273, 369, 414, 493, 756, 1050
FokI GGATG 3 cut(s) 884, 896, 1022
FriOI GRGCYC 2 cut(s) 23, 381
Fsp4HI GCNGC 7 cut(s) 182, 273, 369, 414, 493, 756, 1050
FspBI CTAG 1 cut(s) 612
GlaI GCGC 2 cut(s) 421, 555
GluI GCNGC 7 cut(s) 182, 273, 369, 414, 493, 756, 1050
GsaI CCCAGC 1 cut(s) 924
GsuI CTGGAG 2 cut(s) 740, 749
HaeIII GGCC 5 cut(s) 30, 245, 263, 416, 545
HapII CCGG 8 cut(s) 201, 259, 333, 410, 546, 643, 829, 1040
HgaI GACGC 4 cut(s) 135, 278, 560, 589
HhaI GCGC 2 cut(s) 422, 556
Hin1I GRCGYC 4 cut(s) 127, 270, 531, 600
Hin1II CATG 5 cut(s) 27, 235, 409, 445, 475
Hin6I GCGC 2 cut(s) 420, 554
HinP1I GCGC 2 cut(s) 420, 554
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 7 cut(s) 13, 197, 248, 395, 615, 809, 1032
HpaII CCGG 8 cut(s) 201, 259, 333, 410, 546, 643, 829, 1040
HphI GGTGA 1 cut(s) 958
Hpy166II GTNNAC 1 cut(s) 256
Hpy188III TCNNGA 7 cut(s) 57, 223, 427, 612, 764, 829, 881
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 9 cut(s) 386, 428, 461, 485, 536, 554, 599, 605, 1031
HpyAV CCTTC 7 cut(s) 118, 169, 181, 235, 618, 919, 976
HpyCH4III ACNGT 2 cut(s) 172, 595
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 3 cut(s) 471, 773, 1013
HpyF10VI GCNNNNNNNGC 6 cut(s) 27, 269, 410, 419, 542, 551
HpyF3I CTNAG 4 cut(s) 17, 265, 393, 957
HpySE526I ACGT 1 cut(s) 531
Hsp92I GRCGYC 4 cut(s) 127, 270, 531, 600
Hsp92II CATG 5 cut(s) 27, 235, 409, 445, 475
HspAI GCGC 2 cut(s) 420, 554
Kpn2I TCCGGA 1 cut(s) 828
KroI GCCGGC 2 cut(s) 409, 545
KroNI GCCGGC 2 cut(s) 411, 547
KspI CCGCGG 1 cut(s) 496
Kzo9I GATC 5 cut(s) 53, 59, 300, 432, 450
LguI GCTCTTC 1 cut(s) 765
LmnI GCTCC 5 cut(s) 178, 634, 721, 831, 1057
Lsp1109I GCAGC 2 cut(s) 193, 1036
LweI GCATC 2 cut(s) 303, 1000
MaeI CTAG 1 cut(s) 612
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 3 cut(s) 142, 886, 946
MalI GATC 5 cut(s) 55, 61, 302, 434, 452
MboI GATC 5 cut(s) 53, 59, 300, 432, 450
MboII GAAGA 5 cut(s) 203, 539, 752, 888, 925
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 4 cut(s) 23, 381, 579, 726
MluCI AATT 5 cut(s) 217, 905, 986, 1072, 1093
MlyI GAGTC 3 cut(s) 257, 404, 803
MmeI TCCRAC 5 cut(s) 364, 373, 636, 786, 1009
MroI TCCGGA 1 cut(s) 828
MroNI GCCGGC 2 cut(s) 409, 545
MseI TTAA 1 cut(s) 1002
MspA1I CMGCKG 2 cut(s) 184, 495
MspI CCGG 8 cut(s) 201, 259, 333, 410, 546, 643, 829, 1040
MspR9I CCNGG 5 cut(s) 202, 260, 643, 728, 1040
MvaI CCWGG 1 cut(s) 728
MvnI CGCG 4 cut(s) 368, 495, 554, 569
MwoI GCNNNNNNNGC 6 cut(s) 27, 269, 410, 419, 542, 551
NaeI GCCGGC 2 cut(s) 411, 547
NciI CCSGG 4 cut(s) 202, 260, 643, 1040
NdeII GATC 5 cut(s) 53, 59, 300, 432, 450
NgoMIV GCCGGC 2 cut(s) 409, 545
NlaIII CATG 5 cut(s) 27, 235, 409, 445, 475
NlaIV GGNNCC 2 cut(s) 29, 347
NmeAIII GCCGAG 1 cut(s) 271
NmuCI GTSAC 3 cut(s) 142, 886, 946
PciSI GCTCTTC 1 cut(s) 765
PcsI WCGNNNNNNNCGW 4 cut(s) 372, 528, 624, 1032
PdiI GCCGGC 2 cut(s) 411, 547
PfeI GAWTC 4 cut(s) 13, 197, 615, 1032
PflFI GACNNNGTC 1 cut(s) 892
PfoI TCCNGGA 1 cut(s) 200
PkrI GCNGC 7 cut(s) 183, 274, 370, 415, 494, 757, 1051
PleI GAGTC 3 cut(s) 256, 403, 803
PpsI GAGTC 3 cut(s) 256, 403, 803
Psp124BI GAGCTC 2 cut(s) 23, 381
Psp6I CCWGG 1 cut(s) 726
PspFI CCCAGC 1 cut(s) 920
PspGI CCWGG 1 cut(s) 726
PspN4I GGNNCC 2 cut(s) 29, 347
PspPI GGNCC 3 cut(s) 28, 261, 346
PsuI RGATCY 1 cut(s) 59
PsyI GACNNNGTC 1 cut(s) 892
RsaI GTAC 3 cut(s) 320, 734, 845
RsaNI GTAC 3 cut(s) 319, 733, 844
SacI GAGCTC 2 cut(s) 23, 381
SacII CCGCGG 1 cut(s) 496
SapI GCTCTTC 1 cut(s) 765
SaqAI TTAA 1 cut(s) 1002
SatI GCNGC 7 cut(s) 182, 273, 369, 414, 493, 756, 1050
Sau3AI GATC 5 cut(s) 53, 59, 300, 432, 450
Sau96I GGNCC 3 cut(s) 28, 261, 346
SchI GAGTC 3 cut(s) 257, 404, 803
ScrFI CCNGG 5 cut(s) 202, 260, 643, 728, 1040
SduI GDGCHC 4 cut(s) 23, 381, 579, 726
SfaNI GCATC 2 cut(s) 303, 1000
Sfr303I CCGCGG 1 cut(s) 496
SgrBI CCGCGG 1 cut(s) 496
SinI GGWCC 1 cut(s) 346
Sse9I AATT 5 cut(s) 217, 905, 986, 1072, 1093
SspMI CTAG 1 cut(s) 612
SstI GAGCTC 2 cut(s) 23, 381
StyD4I CCNGG 5 cut(s) 200, 258, 641, 726, 1038
TaaI ACNGT 2 cut(s) 172, 595
TaiI ACGT 1 cut(s) 534
TaqI TCGA 7 cut(s) 426, 573, 603, 788, 819, 980, 1035
TasI AATT 5 cut(s) 217, 905, 986, 1072, 1093
TatI WGTACW 1 cut(s) 732
TauI GCSGC 5 cut(s) 275, 371, 416, 495, 758
TfiI GAWTC 4 cut(s) 13, 197, 615, 1032
Tru1I TTAA 1 cut(s) 1002
Tru9I TTAA 1 cut(s) 1002
TseFI GTSAC 3 cut(s) 142, 886, 946
TseI GCWGC 2 cut(s) 181, 1049
Tsp45I GTSAC 3 cut(s) 142, 886, 946
TspGWI ACGGA 2 cut(s) 130, 241
Tth111I GACNNNGTC 1 cut(s) 892
VpaK11BI GGWCC 1 cut(s) 346
XapI RAATTY 1 cut(s) 986
XbaI TCTAGA 1 cut(s) 611
XspI CTAG 1 cut(s) 612
ZraI GACGTC 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.