Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008509

Physical Location & Seq

Genomic Coordinates Forward (+)

12041393 .. 12041962

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAATCCTATTCCTCTTCCTCCACAACCTCCTCCACCACCACATACTTGTCCCAAACCACGCAACCCAAAAAGGATCCACTCCACTCTGTCCGAAAATCTTCATCAAAGCCATGGAAGAAGCCTGCAGTTGCACCACTTCCACCAACCCTACCAAGTGTCTACGAAGTCGACGCCATTAACTTCAGGGAGCTTGTCCACAGCCTCACCACCGCGCCAGAGTTTTTAGAGCCTCGGTCTCTCCAAAGCGTTGCGCCTCCACCTATCGATACCAACGTGTCCTCTCTACCAAATAACGTCCCTTCTTCGCAGATCGAAAACGTGTCCACTGCACCAAACCATATTTCTTCTTCTTCTTGTTCTTCAGCTGCACCTGAAATCAGTTCATCATTTTCCGTGATATACAAGGAACTATCGGATACTTTGGAGCTGAGTCCGATGCCTCGTCATGAGAAGGTGCAAGATAGCACGGTGGACTCGAGTTGTCTGAGACTGAATTTGCGGTCGCCGTCTTCCAATCATTGGGTTTCTTGGGAATCGTCCAGCCTGGAAGATAGCACTGTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

190

Amino Acids

20.55

Weight (kDa)

5.49

Isoelectric Point (pI)

77.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22880 AT4G37710 AT4G37710
fragaria_vesca	FvH4_1g18020
malus_domestica	MD02G1188600.v1.1 MD02G1188700.v1.1
prunus_persica	Prupe.6G218200_v2.0.a1 Prupe.6G218300_v2.0.a1
pyrus_communis	pycom02g15290 pycom02g15300 pycom15g26200 pycom17g23970
rosa_chinensis	RchiOBHm_Chr2g0108511
rosa_laevigata	RLG00000017674
rosa_multiflora	Rmu_co8481527.1_g000001 Rmu_sc0007574.1_g000014
rosa_roxburghii	Rroxscaffold_2G00135070
rosa_rugosa	Rorug02G0153800
rosa_samantha	Rh2AG202800 Rh2BG215800 Rh2CG206800 Rh2DG210000
rosa_wichuraiana	Rw2G016200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	522
AccI	GTMKAC	2 cut(s)	162, 171
AccII	CGCG	1 cut(s)	215
AciI	CCGC	2 cut(s)	213, 502
AclWI	GGATC	2 cut(s)	71, 84
AcsI	RAATTY	1 cut(s)	496
AcuI	CTGAAG	2 cut(s)	169, 348
AcyI	GRCGYC	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	522
AflIII	ACRYGT	2 cut(s)	276, 321
AjnI	CCWGG	1 cut(s)	546
AjuI	GAANNNNNNNTTGG	2 cut(s)	328, 360
AluBI	AGCT	3 cut(s)	193, 368, 430
AluI	AGCT	3 cut(s)	193, 368, 430
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	2 cut(s)	243, 484
AlwI	GGATC	2 cut(s)	71, 84
Ama87I	CYCGRG	1 cut(s)	478
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	1 cut(s)	496
Asp700I	GAANNNNTTC	1 cut(s)	100
AspLEI	GCGC	2 cut(s)	217, 256
AsuHPI	GGTGA	1 cut(s)	199
AvaI	CYCGRG	1 cut(s)	478
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BamHI	GGATCC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	504
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	1 cut(s)	355
BceAI	ACGGC	1 cut(s)	493
BciT130I	CCWGG	1 cut(s)	548
BciVI	GTATCC	1 cut(s)	412
BcoDI	GTCTC	2 cut(s)	243, 484
BfmI	CTRYAG	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	412
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme1390I	CCNGG	1 cut(s)	548
BmeT110I	CYCGRG	1 cut(s)	478
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	548
BmsI	GCATC	1 cut(s)	429
BpiI	GAAGAC	1 cut(s)	504
Bsa29I	ATCGAT	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	113, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	548
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	113, 233
BseLI	CCNNNNNNNGG	1 cut(s)	522
BseMII	CTCAG	2 cut(s)	422, 479
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	355
BsgI	GTGCAG	2 cut(s)	315, 354
Bsh1236I	CGCG	1 cut(s)	215
Bsh1285I	CGRYCG	1 cut(s)	506
BshVI	ATCGAT	1 cut(s)	267
BsiEI	CGRYCG	1 cut(s)	506
BsiHKAI	GWGCWC	1 cut(s)	567
BsiHKCI	CYCGRG	1 cut(s)	478
BslFI	GGGAC	2 cut(s)	37, 284
BslI	CCNNNNNNNGG	1 cut(s)	522
BsmAI	GTCTC	2 cut(s)	243, 484
BsmFI	GGGAC	2 cut(s)	37, 284
Bso31I	GGTCTC	1 cut(s)	243
BsoBI	CYCGRG	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	2 cut(s)	76, 312
Bsp19I	CCATGG	1 cut(s)	113
BspACI	CCGC	2 cut(s)	213, 502
BspCNI	CTCAG	2 cut(s)	423, 480
BspDI	ATCGAT	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	215
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	78
BspMAI	CTGCAG	1 cut(s)	130
BspPI	GGATC	2 cut(s)	71, 84
BspTNI	GGTCTC	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	113, 233
BssMI	GATC	2 cut(s)	76, 312
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	2 cut(s)	472, 562
Bst6I	CTCTTC	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	431, 488
BstDSI	CCRYGG	1 cut(s)	113
BstFNI	CGCG	1 cut(s)	215
BstHHI	GCGC	2 cut(s)	217, 256
BstKTI	GATC	2 cut(s)	79, 315
BstMAI	GTCTC	2 cut(s)	243, 484
BstMBI	GATC	2 cut(s)	76, 312
BstMCI	CGRYCG	1 cut(s)	506
BstNI	CCWGG	1 cut(s)	548
BstSCI	CCNGG	1 cut(s)	546
BstSFI	CTRYAG	1 cut(s)	126
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	355
BstV2I	GAAGAC	1 cut(s)	504
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
Bsu15I	ATCGAT	1 cut(s)	267
BsuI	GTATCC	1 cut(s)	412
BsuTUI	ATCGAT	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	113
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	2 cut(s)	327, 558
Cac8I	GCNNGC	1 cut(s)	126
CciI	TCATGA	1 cut(s)	448
CfoI	GCGC	2 cut(s)	217, 256
ClaI	ATCGAT	1 cut(s)	267
CseI	GACGC	1 cut(s)	182
CviAII	CATG	2 cut(s)	114, 449
CviJI	RGCY	8 cut(s)	112, 124, 193, 204, 232, 368, 430, 546
CviKI_1	RGCY	8 cut(s)	112, 124, 193, 204, 232, 368, 430, 546
DdeI	CTNAG	2 cut(s)	431, 488
DpnI	GATC	2 cut(s)	78, 314
DpnII	GATC	2 cut(s)	76, 312
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	113
Eco31I	GGTCTC	1 cut(s)	243
Eco57I	CTGAAG	2 cut(s)	169, 348
Eco88I	CYCGRG	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	2 cut(s)	117, 452
FaiI	YATR	5 cut(s)	46, 115, 342, 403, 450
FaqI	GGGAC	2 cut(s)	37, 284
FatI	CATG	2 cut(s)	113, 448
FblI	GTMKAC	2 cut(s)	162, 171
Fnu4HI	GCNGC	1 cut(s)	369
Fsp4HI	GCNGC	1 cut(s)	369
GlaI	GCGC	2 cut(s)	216, 255
GluI	GCNGC	1 cut(s)	369
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	2 cut(s)	217, 256
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	117, 452
Hin6I	GCGC	2 cut(s)	215, 254
HinP1I	GCGC	2 cut(s)	215, 254
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	4 cut(s)	5, 433, 476, 536
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	5 cut(s)	163, 172, 199, 327, 475
Hpy188I	TCNGA	4 cut(s)	95, 418, 438, 489
Hpy188III	TCNNGA	1 cut(s)	449
Hpy8I	GTNNAC	5 cut(s)	163, 172, 199, 327, 475
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	312, 448
HpyCH4III	ACNGT	2 cut(s)	472, 562
HpyCH4IV	ACGT	3 cut(s)	276, 297, 321
HpyCH4V	TGCA	5 cut(s)	128, 134, 332, 371, 460
HpyF3I	CTNAG	2 cut(s)	431, 488
HpySE526I	ACGT	3 cut(s)	276, 297, 321
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	117, 452
HspAI	GCGC	2 cut(s)	215, 254
Kzo9I	GATC	2 cut(s)	76, 312
LmnI	GCTCC	2 cut(s)	190, 427
LpnPI	CCDG	7 cut(s)	138, 172, 231, 387, 533, 556, 560
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	1 cut(s)	429
MaeII	ACGT	3 cut(s)	276, 297, 321
MalI	GATC	2 cut(s)	78, 314
MboI	GATC	2 cut(s)	76, 312
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	1 cut(s)	496
MlyI	GAGTC	2 cut(s)	442, 470
MnlI	CCTC	9 cut(s)	25, 31, 40, 43, 215, 243, 267, 292, 453
MroXI	GAANNNNTTC	1 cut(s)	100
MseI	TTAA	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	548
MvaI	CCWGG	1 cut(s)	548
MvnI	CGCG	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	113
NdeII	GATC	2 cut(s)	76, 312
NlaIII	CATG	2 cut(s)	117, 452
NlaIV	GGNNCC	1 cut(s)	78
PaeR7I	CTCGAG	1 cut(s)	478
PagI	TCATGA	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 476
PdmI	GAANNNNTTC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	5, 536
PflMI	CCANNNNNTGG	1 cut(s)	522
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	2 cut(s)	441, 470
PpsI	GAGTC	2 cut(s)	441, 470
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	78
PspXI	VCTCGAGB	1 cut(s)	478
PstI	CTGCAG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	368
SalI	GTCGAC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	2 cut(s)	76, 312
SchI	GAGTC	2 cut(s)	442, 470
ScrFI	CCNGG	1 cut(s)	548
SduI	GDGCHC	1 cut(s)	567
SfaNI	GCATC	1 cut(s)	429
SfcI	CTRYAG	1 cut(s)	126
Sfr274I	CTCGAG	1 cut(s)	478
SlaI	CTCGAG	1 cut(s)	478
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
Sse9I	AATT	1 cut(s)	496
SsiI	CCGC	2 cut(s)	213, 502
StyD4I	CCNGG	1 cut(s)	546
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	2 cut(s)	472, 562
TaiI	ACGT	3 cut(s)	279, 300, 324
TaqI	TCGA	4 cut(s)	171, 267, 315, 479
TaqII	GACCGA	1 cut(s)	225
TasI	AATT	1 cut(s)	496
TfiI	GAWTC	2 cut(s)	5, 536
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	2 cut(s)	334, 565
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	2 cut(s)	93, 375
TspGWI	ACGGA	1 cut(s)	385
TspRI	CASTG	2 cut(s)	334, 565
Van91I	CCANNNNNTGG	1 cut(s)	522
XapI	RAATTY	1 cut(s)	496
XhoI	CTCGAG	1 cut(s)	478
XmiI	GTMKAC	2 cut(s)	162, 171
XmnI	GAANNNNTTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.