Rmu_co8481527.1_g000001

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8481527.1
OG0008509
Physical Location & Seq
Forward (+)
1 .. 269
269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8481527.1_g000001.1.cds

Sequence Viewer

Length: 269 bp
caccgatcgaaatccaaagaggaccaccacatgttccttctccggtttcagctaaggttactggcagcacttcgcctttttcagttatgtacaaggacttggctgagacattagggatgagtagtactcctcatcatcagaagaaggcagtggatcaaaacatcacgggggactcgagctatctgcggttgaacttgtcgccggcttcgcagcattggttatcttttcctatgttgagccctggaactctgaccagtctggaactctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

88

Amino Acids

9.5

Weight (kDa)

7.47

Isoelectric Point (pI)

68.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 186
AclWI GGATC 1 cut(s) 161
AfaI GTAC 2 cut(s) 91, 126
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 1 cut(s) 192
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 2 cut(s) 52, 179
AluI AGCT 2 cut(s) 52, 179
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 1 cut(s) 161
Ama87I CYCGRG 1 cut(s) 174
ApeKI GCWGC 2 cut(s) 65, 210
AspS9I GGNCC 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 174
AvaII GGWCC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 241
BbvI GCAGC 2 cut(s) 77, 222
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BciT130I CCWGG 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 1 cut(s) 267
BisI GCNGC 2 cut(s) 66, 211
BlsI GCNGC 2 cut(s) 67, 212
BmcAI AGTACT 1 cut(s) 126
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 242
BplI GAGNNNNNCTC 2 cut(s) 111, 143
Bpu10I CCTNAGC 1 cut(s) 53
BsaBI GATNNNNATC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 240
BsaWI WCCGGW 1 cut(s) 42
Bse118I RCCGGY 1 cut(s) 201
Bse1I ACTGG 2 cut(s) 66, 254
Bse8I GATNNNNATC 1 cut(s) 10
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 122
BseJI GATNNNNATC 1 cut(s) 10
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 2 cut(s) 66, 254
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 2 cut(s) 77, 222
Bsh1285I CGRYCG 1 cut(s) 8
BsiEI CGRYCG 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 174
BsiSI CCGG 2 cut(s) 43, 202
BslFI GGGAC 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 241
Bsp1407I TGTACA 1 cut(s) 89
Bsp143I GATC 2 cut(s) 5, 153
BspACI CCGC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 96
BspPI GGATC 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 201
BsrGI TGTACA 1 cut(s) 89
BsrI ACTGG 2 cut(s) 66, 254
BssAI RCCGGY 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 2 cut(s) 5, 153
Bst2UI CCWGG 1 cut(s) 242
BstAUI TGTACA 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 2 cut(s) 53, 104
BstF5I GGATG 1 cut(s) 122
BstKTI GATC 2 cut(s) 8, 156
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 2 cut(s) 5, 153
BstMCI CGRYCG 1 cut(s) 8
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNI CCWGG 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 77, 222
BtsCI GGATG 1 cut(s) 122
BtsI GCAGTG 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 22
Csp6I GTAC 2 cut(s) 90, 125
CviAII CATG 1 cut(s) 31
CviJI RGCY 5 cut(s) 52, 103, 179, 205, 239
CviKI_1 RGCY 5 cut(s) 52, 103, 179, 205, 239
CviQI GTAC 2 cut(s) 90, 125
DdeI CTNAG 2 cut(s) 53, 104
DpnI GATC 2 cut(s) 7, 155
DpnII GATC 2 cut(s) 5, 153
Eco24I GRGCYC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 241
FaeI CATG 1 cut(s) 34
FaiI YATR 3 cut(s) 32, 88, 232
FaqI GGGAC 1 cut(s) 184
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 66, 211
FokI GGATG 1 cut(s) 129
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 2 cut(s) 66, 211
FspBI CTAG 1 cut(s) 267
GluI GCNGC 2 cut(s) 66, 211
HapII CCGG 2 cut(s) 43, 202
Hin1II CATG 1 cut(s) 34
HinfI GANTC 1 cut(s) 172
HpaII CCGG 2 cut(s) 43, 202
Hpy188I TCNGA 2 cut(s) 140, 251
Hpy188III TCNNGA 1 cut(s) 259
HpyAV CCTTC 2 cut(s) 47, 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpyF3I CTNAG 2 cut(s) 53, 104
Hsp92II CATG 1 cut(s) 34
KroI GCCGGC 1 cut(s) 201
KroNI GCCGGC 1 cut(s) 203
Kzo9I GATC 2 cut(s) 5, 153
LpnPI CCDG 6 cut(s) 47, 56, 215, 227, 244, 254
Lsp1109I GCAGC 2 cut(s) 77, 222
MaeI CTAG 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 57
MalI GATC 2 cut(s) 7, 155
MboI GATC 2 cut(s) 5, 153
MboII GAAGA 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 241
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 2 cut(s) 13, 140
MroNI GCCGGC 1 cut(s) 201
MspI CCGG 2 cut(s) 43, 202
MspR9I CCNGG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 207
NaeI GCCGGC 1 cut(s) 203
NdeII GATC 2 cut(s) 5, 153
NgoMIV GCCGGC 1 cut(s) 201
NlaIII CATG 1 cut(s) 34
NspI RCATGY 1 cut(s) 34
PaeR7I CTCGAG 1 cut(s) 174
PciI ACATGT 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 172
PdiI GCCGGC 1 cut(s) 203
PkrI GCNGC 2 cut(s) 67, 212
Ple19I CGATCG 1 cut(s) 8
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PscI ACATGT 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspPI GGNCC 1 cut(s) 22
PspXI VCTCGAGB 1 cut(s) 174
PvuI CGATCG 1 cut(s) 8
RsaI GTAC 2 cut(s) 91, 126
RsaNI GTAC 2 cut(s) 90, 125
SatI GCNGC 2 cut(s) 66, 211
Sau3AI GATC 2 cut(s) 5, 153
Sau96I GGNCC 1 cut(s) 22
ScaI AGTACT 1 cut(s) 126
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 1 cut(s) 241
SetI ASST 3 cut(s) 54, 59, 181
Sfr274I CTCGAG 1 cut(s) 174
SinI GGWCC 1 cut(s) 22
SlaI CTCGAG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
SsiI CCGC 1 cut(s) 186
SspMI CTAG 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 240
TaqI TCGA 2 cut(s) 8, 175
TatI WGTACW 2 cut(s) 89, 124
TscAI CASTG 1 cut(s) 155
TseI GCWGC 2 cut(s) 65, 210
TspRI CASTG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 22
XceI RCATGY 1 cut(s) 34
XhoI CTCGAG 1 cut(s) 174
XspI CTAG 1 cut(s) 267
ZrmI AGTACT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.