Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008509

Physical Location & Seq

Genomic Coordinates Forward (+)

17234192 .. 17234755

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1188600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGAATCTTACGCCTCTTCCTCTTCAGCCTCCACCACCACATACTTGTCCCAAACCATACAACCAACAAAGGGTTCAATTTCAACCTCAAAGCAGCTTCCCAATCACCAGTCATCACTCCACTCGGTTCGAAAATCTTCGTCGAAGCCATGGAAGAAACCTGCTGTTGCACCACTTCCACCAACCCTACCAAGAATCTACAAAGTTGACCCCATTAACTTCAGGGAGCTTGTCCAGATCCTAACCAGCGCGCCAGAGTTTATGGAGACTCGGTCTCTCCAGAGCGTAGCTCCTCCACCGATCGATATCCCTGTGTCTTCTGTACCAAACCATGTCCCTTCTTCTTCACAAAAAATTAGCTCACCATTTTCGGTTATGTACAAGGAATTGTCGGATACATTGGAGCTGAGTCCGATGCCTCGCCAACAGAACGTGCATGATAGCACGGTGGACTCGAGTTACCTGAGACTGAATTTGCAGTCCCCGTCTTCCCATCATTGGTTTTCTTTCCCTATGCTCAGCCCAGGGACTTTGTCCAGTATCGAACGACCCGAAGTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

188

Amino Acids

20.64

Weight (kDa)

9.22

Isoelectric Point (pI)

76.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22880 AT4G37710 AT4G37710
fragaria_vesca	FvH4_1g18020
malus_domestica	MD02G1188600.v1.1 MD02G1188700.v1.1
prunus_persica	Prupe.6G218200_v2.0.a1 Prupe.6G218300_v2.0.a1
pyrus_communis	pycom02g15290 pycom02g15300 pycom15g26200 pycom17g23970
rosa_chinensis	RchiOBHm_Chr2g0108511
rosa_laevigata	RLG00000017674
rosa_multiflora	Rmu_co8481527.1_g000001 Rmu_sc0007574.1_g000014
rosa_roxburghii	Rroxscaffold_2G00135070
rosa_rugosa	Rorug02G0153800
rosa_samantha	Rh2AG202800 Rh2BG215800 Rh2CG206800 Rh2DG210000
rosa_wichuraiana	Rw2G016200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	169
AccII	CGCG	1 cut(s)	251
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	2 cut(s)	9, 205
AfaI	GTAC	2 cut(s)	324, 380
AfiI	CCNNNNNNNGG	2 cut(s)	71, 498
AgsI	TTSAA	2 cut(s)	78, 84
AjnI	CCWGG	1 cut(s)	523
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AluBI	AGCT	5 cut(s)	97, 229, 290, 360, 406
AluI	AGCT	5 cut(s)	97, 229, 290, 360, 406
Alw26I	GTCTC	3 cut(s)	260, 279, 460
AlwI	GGATC	1 cut(s)	232
Ama87I	CYCGRG	1 cut(s)	454
ApeKI	GCWGC	1 cut(s)	94
ApoI	RAATTY	1 cut(s)	472
Asp700I	GAANNNNTTC	1 cut(s)	136
AspLEI	GCGC	2 cut(s)	251, 253
AsuHPI	GGTGA	2 cut(s)	98, 354
AsuII	TTCGAA	1 cut(s)	130
AvaI	CYCGRG	1 cut(s)	454
BbsI	GAAGAC	2 cut(s)	309, 480
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	1 cut(s)	501
BciT130I	CCWGG	1 cut(s)	525
BciVI	GTATCC	1 cut(s)	388
BcoDI	GTCTC	3 cut(s)	260, 279, 460
BfuAI	ACCTGC	1 cut(s)	169
BfuI	GTATCC	1 cut(s)	388
BisI	GCNGC	1 cut(s)	95
BlpI	GCTNAGC	1 cut(s)	518
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	525
BmeT110I	CYCGRG	1 cut(s)	454
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	1 cut(s)	405
BpiI	GAAGAC	2 cut(s)	309, 480
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
BpmI	CTGGAG	1 cut(s)	263
Bpu1102I	GCTNAGC	1 cut(s)	518
Bpu14I	TTCGAA	1 cut(s)	130
Bsa29I	ATCGAT	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	305
BsaI	GGTCTC	1 cut(s)	279
BsaJI	CCNNGG	3 cut(s)	149, 523, 524
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 498
Bse1I	ACTGG	2 cut(s)	109, 537
Bse8I	GATNNNNATC	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	525
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	149, 523, 524
BseJI	GATNNNNATC	1 cut(s)	305
BseLI	CCNNNNNNNGG	2 cut(s)	71, 498
BseMII	CTCAG	3 cut(s)	398, 455, 532
BseNI	ACTGG	2 cut(s)	109, 537
BsePI	GCGCGC	1 cut(s)	249
BseRI	GAGGAG	1 cut(s)	282
BseXI	GCAGC	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	251
Bsh1285I	CGRYCG	1 cut(s)	303
BshVI	ATCGAT	1 cut(s)	303
BsiEI	CGRYCG	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	454
BslFI	GGGAC	4 cut(s)	34, 320, 466, 541
BslI	CCNNNNNNNGG	2 cut(s)	71, 498
BsmAI	GTCTC	3 cut(s)	260, 279, 460
BsmFI	GGGAC	4 cut(s)	34, 320, 466, 541
Bso31I	GGTCTC	1 cut(s)	279
BsoBI	CYCGRG	1 cut(s)	454
Bsp119I	TTCGAA	1 cut(s)	130
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	2 cut(s)	237, 300
Bsp1720I	GCTNAGC	1 cut(s)	518
Bsp19I	CCATGG	1 cut(s)	149
BspCNI	CTCAG	3 cut(s)	399, 456, 531
BspDI	ATCGAT	1 cut(s)	303
BspFNI	CGCG	1 cut(s)	251
BspMI	ACCTGC	1 cut(s)	169
BspPI	GGATC	1 cut(s)	232
BspT104I	TTCGAA	1 cut(s)	130
BspTNI	GGTCTC	1 cut(s)	279
BsrGI	TGTACA	1 cut(s)	378
BsrI	ACTGG	2 cut(s)	109, 537
BssECI	CCNNGG	3 cut(s)	149, 523, 524
BssHII	GCGCGC	1 cut(s)	249
BssMI	GATC	2 cut(s)	237, 300
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	2 cut(s)	22, 28
BstAUI	TGTACA	1 cut(s)	378
BstBI	TTCGAA	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	3 cut(s)	407, 464, 518
BstDSI	CCRYGG	1 cut(s)	149
BstFNI	CGCG	1 cut(s)	251
BstHHI	GCGC	2 cut(s)	251, 253
BstKTI	GATC	2 cut(s)	240, 303
BstMAI	GTCTC	3 cut(s)	260, 279, 460
BstMBI	GATC	2 cut(s)	237, 300
BstMCI	CGRYCG	1 cut(s)	303
BstNI	CCWGG	1 cut(s)	525
BstSCI	CCNGG	1 cut(s)	523
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	2 cut(s)	309, 480
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
Bsu15I	ATCGAT	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	388
BsuTUI	ATCGAT	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	149
BveI	ACCTGC	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	251
CfoI	GCGC	2 cut(s)	251, 253
ClaI	ATCGAT	1 cut(s)	303
Csp6I	GTAC	2 cut(s)	323, 379
CviAII	CATG	3 cut(s)	150, 332, 437
CviJI	RGCY	8 cut(s)	29, 97, 148, 229, 290, 360, 406, 522
CviKI_1	RGCY	8 cut(s)	29, 97, 148, 229, 290, 360, 406, 522
CviQI	GTAC	2 cut(s)	323, 379
DdeI	CTNAG	3 cut(s)	407, 464, 518
DpnI	GATC	2 cut(s)	239, 302
DpnII	GATC	2 cut(s)	237, 300
Eam1104I	CTCTTC	2 cut(s)	22, 28
EarI	CTCTTC	2 cut(s)	22, 28
Eco130I	CCWWGG	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	279
Eco32I	GATATC	1 cut(s)	307
Eco57I	CTGAAG	2 cut(s)	9, 205
Eco88I	CYCGRG	1 cut(s)	454
EcoRII	CCWGG	1 cut(s)	523
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	3 cut(s)	153, 335, 440
FaiI	YATR	8 cut(s)	43, 59, 151, 263, 333, 377, 438, 515
FaqI	GGGAC	4 cut(s)	34, 320, 466, 541
FatI	CATG	3 cut(s)	149, 331, 436
Fnu4HI	GCNGC	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	95
GlaI	GCGC	2 cut(s)	250, 252
GluI	GCNGC	1 cut(s)	95
GsuI	CTGGAG	1 cut(s)	263
HhaI	GCGC	2 cut(s)	251, 253
Hin1II	CATG	3 cut(s)	153, 335, 440
Hin6I	GCGC	2 cut(s)	249, 251
HinP1I	GCGC	2 cut(s)	249, 251
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	5 cut(s)	5, 195, 268, 409, 452
HphI	GGTGA	2 cut(s)	98, 354
Hpy166II	GTNNAC	2 cut(s)	208, 451
Hpy188I	TCNGA	2 cut(s)	394, 414
Hpy188III	TCNNGA	2 cut(s)	235, 280
Hpy8I	GTNNAC	2 cut(s)	208, 451
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	348
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	3 cut(s)	170, 436, 478
HpyF3I	CTNAG	3 cut(s)	407, 464, 518
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	3 cut(s)	153, 335, 440
HspAI	GCGC	2 cut(s)	249, 251
Kzo9I	GATC	2 cut(s)	237, 300
LmnI	GCTCC	3 cut(s)	226, 295, 403
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	1 cut(s)	405
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	2 cut(s)	239, 302
MboI	GATC	2 cut(s)	237, 300
MboII	GAAGA	8 cut(s)	9, 15, 129, 166, 309, 333, 336, 480
MflI	RGATCY	1 cut(s)	237
MluCI	AATT	4 cut(s)	78, 354, 386, 472
MlyI	GAGTC	3 cut(s)	262, 418, 446
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	6 cut(s)	25, 31, 40, 97, 303, 429
MroXI	GAANNNNTTC	1 cut(s)	136
MseI	TTAA	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	525
MvaI	CCWGG	1 cut(s)	525
MvnI	CGCG	1 cut(s)	251
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	2 cut(s)	237, 300
NlaIII	CATG	3 cut(s)	153, 335, 440
NspV	TTCGAA	1 cut(s)	130
PaeR7I	CTCGAG	1 cut(s)	454
PasI	CCCWGGG	1 cut(s)	524
PauI	GCGCGC	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	2 cut(s)	452, 549
PdmI	GAANNNNTTC	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	5, 195
PflFI	GACNNNGTC	2 cut(s)	271, 532
PkrI	GCNGC	1 cut(s)	96
Ple19I	CGATCG	1 cut(s)	303
PleI	GAGTC	3 cut(s)	262, 417, 446
PpsI	GAGTC	3 cut(s)	262, 417, 446
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PspXI	VCTCGAGB	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	237
PsyI	GACNNNGTC	2 cut(s)	271, 532
PteI	GCGCGC	1 cut(s)	249
PvuI	CGATCG	1 cut(s)	303
RsaI	GTAC	2 cut(s)	324, 380
RsaNI	GTAC	2 cut(s)	323, 379
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	2 cut(s)	237, 300
SchI	GAGTC	3 cut(s)	262, 418, 446
ScrFI	CCNGG	1 cut(s)	525
SetI	ASST	9 cut(s)	89, 99, 163, 231, 292, 362, 408, 435, 465
SfaNI	GCATC	1 cut(s)	405
Sfr274I	CTCGAG	1 cut(s)	454
SfuI	TTCGAA	1 cut(s)	130
SlaI	CTCGAG	1 cut(s)	454
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse9I	AATT	4 cut(s)	78, 354, 386, 472
StyD4I	CCNGG	1 cut(s)	523
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	5 cut(s)	130, 143, 303, 455, 543
TaqII	GACCGA	1 cut(s)	261
TasI	AATT	4 cut(s)	78, 354, 386, 472
TatI	WGTACW	1 cut(s)	378
TfiI	GAWTC	2 cut(s)	5, 195
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseI	GCWGC	1 cut(s)	94
Tth111I	GACNNNGTC	2 cut(s)	271, 532
XapI	RAATTY	1 cut(s)	472
XhoI	CTCGAG	1 cut(s)	454
XmnI	GAANNNNTTC	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.