AT2G23240

EC protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009194
Physical Location & Seq
Reverse (-)
9895680 .. 9896347
668 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G23240.2

Sequence Viewer

Length: 258 bp
ATGGCAGACACAGGCAAAGGAAGTGCAAGCGCTAGCTGCAACGATCGTTGTGGCTGCCCTTCTCCATGTCCCGGTGGCGAATCTTGCAGGTGCAAGATGATGAGCGAAGCATCTGGTGGGGATCAAGAGCACAACACGTGTCCATGTGGGGAGCACTGTGGCTGTAACCCTTGCAACTGCCCCAAGACTCAAACTCAAACCTCTGCTAAGGGTTGCACTTGTGGTGAGGGCTGCACCTGTGCCACTTGCGCTGCTTAG

Protein Analysis

85

Amino Acids

8.44

Weight (kDa)

5.49

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallothio_PEC PF02068 13 - 83 1.6e-26 Plant PEC family metallothionein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 78
Acc36I ACCTGC 1 cut(s) 78
AclWI GGATC 1 cut(s) 129
AcvI CACGTG 1 cut(s) 138
AfeI AGCGCT 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 71
AflIII ACRYGT 2 cut(s) 135, 137
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw21I GWGCWC 2 cut(s) 132, 156
AlwI GGATC 1 cut(s) 129
Aor51HI AGCGCT 1 cut(s) 31
ApeKI GCWGC 4 cut(s) 36, 54, 231, 251
AspLEI GCGC 2 cut(s) 32, 251
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 236
AsuNHI GCTAGC 1 cut(s) 32
BbrPI CACGTG 1 cut(s) 138
Bbv12I GWGCWC 2 cut(s) 132, 156
BbvI GCAGC 4 cut(s) 23, 41, 218, 238
BcnI CCSGG 1 cut(s) 72
BfaI CTAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 78
BisI GCNGC 4 cut(s) 37, 55, 232, 252
BlsI GCNGC 4 cut(s) 38, 56, 233, 253
Bme1390I CCNGG 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 119
BmtI GCTAGC 1 cut(s) 36
Bpu10I CCTNAGC 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 72
BsaAI YACGTR 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 71
BseXI GCAGC 4 cut(s) 23, 41, 218, 238
BsgI GTGCAG 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 46
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 2 cut(s) 132, 156
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 54
Bsp1286I GDGCHC 2 cut(s) 132, 156
Bsp143I GATC 2 cut(s) 43, 121
BspMI ACCTGC 1 cut(s) 78
BspOI GCTAGC 1 cut(s) 36
BspPI GGATC 1 cut(s) 129
BssMI GATC 2 cut(s) 43, 121
Bst4CI ACNGT 1 cut(s) 158
BstBAI YACGTR 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 28, 34
BstDEI CTNAG 2 cut(s) 207, 255
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 2 cut(s) 32, 251
BstKTI GATC 2 cut(s) 46, 124
BstMBI GATC 2 cut(s) 43, 121
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 3 cut(s) 36, 84, 248
BstSCI CCNGG 1 cut(s) 70
BstV1I GCAGC 4 cut(s) 23, 41, 218, 238
BtsIMutI CAGTG 1 cut(s) 154
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 2 cut(s) 28, 34
CfoI GCGC 2 cut(s) 32, 251
CviAII CATG 2 cut(s) 66, 144
CviJI RGCY 4 cut(s) 36, 54, 162, 231
CviKI_1 RGCY 4 cut(s) 36, 54, 162, 231
DdeI CTNAG 2 cut(s) 207, 255
DpnI GATC 2 cut(s) 45, 123
DpnII GATC 2 cut(s) 43, 121
Eco47III AGCGCT 1 cut(s) 31
Eco72I CACGTG 1 cut(s) 138
FaeI CATG 2 cut(s) 69, 147
FaiI YATR 2 cut(s) 67, 145
FaqI GGGAC 1 cut(s) 54
FatI CATG 2 cut(s) 65, 143
Fnu4HI GCNGC 4 cut(s) 37, 55, 232, 252
Fsp4HI GCNGC 4 cut(s) 37, 55, 232, 252
FspBI CTAG 1 cut(s) 33
GlaI GCGC 2 cut(s) 31, 250
GluI GCNGC 4 cut(s) 37, 55, 232, 252
HaeII RGCGCY 1 cut(s) 33
HapII CCGG 1 cut(s) 72
HhaI GCGC 2 cut(s) 32, 251
Hin1II CATG 2 cut(s) 69, 147
Hin6I GCGC 2 cut(s) 30, 249
HinP1I GCGC 2 cut(s) 30, 249
HinfI GANTC 2 cut(s) 80, 187
HpaII CCGG 1 cut(s) 72
HphI GGTGA 1 cut(s) 236
Hpy188III TCNNGA 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 7 cut(s) 26, 39, 87, 93, 174, 216, 234
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 84, 248
HpyF3I CTNAG 2 cut(s) 207, 255
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 2 cut(s) 69, 147
HspAI GCGC 2 cut(s) 30, 249
Kzo9I GATC 2 cut(s) 43, 121
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 4 cut(s) 73, 85, 99, 250
Lsp1109I GCAGC 4 cut(s) 23, 41, 218, 238
LweI GCATC 1 cut(s) 119
MaeI CTAG 1 cut(s) 33
MaeII ACGT 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 164
MalI GATC 2 cut(s) 45, 123
MboI GATC 2 cut(s) 43, 121
MhlI GDGCHC 2 cut(s) 132, 156
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 2 cut(s) 211, 220
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 72
MwoI GCNNNNNNNGC 3 cut(s) 36, 84, 248
NciI CCSGG 1 cut(s) 72
NdeII GATC 2 cut(s) 43, 121
NheI GCTAGC 1 cut(s) 32
NlaIII CATG 2 cut(s) 69, 147
PaqCI CACCTGC 1 cut(s) 78
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 4 cut(s) 38, 56, 233, 253
Ple19I CGATCG 1 cut(s) 46
PleI GAGTC 1 cut(s) 181
PmaCI CACGTG 1 cut(s) 138
PmlI CACGTG 1 cut(s) 138
PpsI GAGTC 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 138
PspCI CACGTG 1 cut(s) 138
PvuI CGATCG 1 cut(s) 46
SatI GCNGC 4 cut(s) 37, 55, 232, 252
Sau3AI GATC 2 cut(s) 43, 121
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 2 cut(s) 132, 156
SetI ASST 5 cut(s) 38, 92, 140, 203, 239
SfaNI GCATC 1 cut(s) 119
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 1 cut(s) 140
TfiI GAWTC 1 cut(s) 80
TscAI CASTG 1 cut(s) 161
TseI GCWGC 4 cut(s) 36, 54, 231, 251
TspRI CASTG 1 cut(s) 161
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.