Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009194

Physical Location & Seq

Genomic Coordinates Reverse (-)

16751395 .. 16752147

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTTTTGTGTACGTGGTGCAACTACAATACATGCATGGAAAAATATTGCCACCTCCACTTCTCCTAAAATCTCGAATCACCACGATATCTATTATCTGTGCGAACGAATACGGTATCTCTCTCAGTACATCTCACAGCAAGAAGCAACAATGGCAGATACAACCACAGCGGGAGGTCTCAAGGCCAGCTGCAACGACCGGTGCGGCTGCCCTAATCCGTGCCCCGGTGGCTCCTCTTGCAAGTGCGCAACCACCTCCGACCCCACGAGCGGGGGCGACCACATGACATGCTCCTGTGGCGAGCACTGCAGCTGCAGCCCATGCACTTGCGCCAAGAGCGCAGCCACGGCTGGCAAGGCCAAATGCACATGTGGCGCGGGCTGCGCATGCGTCTCTTGCGCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0016020 GO:0030001 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0072511

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallothio_PEC

Protein Analysis

136

Amino Acids

13.88

Weight (kDa)

8.07

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23240 AT2G23240 AT2G42000 AT2G42000
fragaria_vesca	FvH4_2g16730
malus_domestica	MD05G1135300.v1.1
prunus_persica	Prupe.8G179200_v2.0.a1
pyrus_communis	pycom05g13190
rosa_chinensis	RchiOBHm_Chr6g0280851
rosa_multiflora	Rmu_sc0023262.1_g000005 Rmu_ssc0000024.1_g000007
rosa_roxburghii	Rroxscaffold_7G00187560
rosa_rugosa	Rorug06G0135100
rosa_samantha	Rh6AG248400 Rh6AG248500 Rh6BG250000 Rh6CG251100 Rh6CG251200 Rh6DG242700 Rh6DG242800
rosa_wichuraiana	Rw6G021470 Rw6G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	3 cut(s)	247, 385, 400
AccBSI	CCGCTC	1 cut(s)	270
AccII	CGCG	1 cut(s)	377
AciI	CCGC	4 cut(s)	170, 204, 270, 377
AfaI	GTAC	2 cut(s)	12, 128
AfiI	CCNNNNNNNGG	3 cut(s)	224, 269, 270
AflIII	ACRYGT	1 cut(s)	368
AgeI	ACCGGT	1 cut(s)	198
AluBI	AGCT	2 cut(s)	189, 312
AluI	AGCT	2 cut(s)	189, 312
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	2 cut(s)	182, 397
AoxI	GGCC	2 cut(s)	183, 357
ApeKI	GCWGC	8 cut(s)	189, 207, 309, 312, 315, 341, 381, 401
AsiGI	ACCGGT	1 cut(s)	198
AspLEI	GCGC	6 cut(s)	248, 332, 341, 377, 386, 401
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	224
BauI	CACGAG	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	7 cut(s)	176, 194, 299, 321, 327, 353, 368
BceAI	ACGGC	1 cut(s)	363
BcnI	CCSGG	1 cut(s)	225
BcoDI	GTCTC	2 cut(s)	182, 397
BfmI	CTRYAG	2 cut(s)	307, 313
BglI	GCCNNNNNGGC	1 cut(s)	228
BisI	GCNGC	9 cut(s)	190, 205, 208, 310, 313, 316, 342, 382, 402
BlsI	GCNGC	9 cut(s)	191, 206, 209, 311, 314, 317, 343, 383, 403
Bme1390I	CCNGG	1 cut(s)	225
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	223, 345
BsaWI	WCCGGW	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 269, 270
Bse118I	RCCGGY	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	223, 345
BseLI	CCNNNNNNNGG	3 cut(s)	224, 269, 270
BseMII	CTCAG	1 cut(s)	137
BseRI	GAGGAG	1 cut(s)	223
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	7 cut(s)	176, 194, 299, 321, 327, 353, 368
Bsh1236I	CGCG	1 cut(s)	377
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	2 cut(s)	185, 359
BshTI	ACCGGT	1 cut(s)	198
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	2 cut(s)	199, 225
BslI	CCNNNNNNNGG	3 cut(s)	224, 269, 270
BsmAI	GTCTC	2 cut(s)	182, 397
BsmBI	CGTCTC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	185, 359
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	224, 306
BspACI	CCGC	4 cut(s)	170, 204, 270, 377
BspANI	GGCC	2 cut(s)	185, 359
BspCNI	CTCAG	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	377
BspLI	GGNNCC	1 cut(s)	232
BspMAI	CTGCAG	2 cut(s)	311, 317
BspTNI	GGTCTC	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	198
BssAI	RCCGGY	1 cut(s)	198
BssECI	CCNNGG	2 cut(s)	223, 345
BssSI	CACGAG	1 cut(s)	265
Bst2BI	CACGAG	1 cut(s)	265
Bst4CI	ACNGT	1 cut(s)	114
BstAPI	GCANNNNNTGC	1 cut(s)	321
BstBAI	YACGTR	1 cut(s)	14
BstC8I	GCNNGC	5 cut(s)	187, 302, 352, 379, 388
BstDEI	CTNAG	1 cut(s)	123
BstDSI	CCRYGG	1 cut(s)	345
BstFNI	CGCG	1 cut(s)	377
BstHHI	GCGC	6 cut(s)	248, 332, 341, 377, 386, 401
BstMAI	GTCTC	2 cut(s)	182, 397
BstMCI	CGRYCG	1 cut(s)	199
BstNSI	RCATGY	4 cut(s)	35, 291, 372, 390
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	2 cut(s)	307, 313
BstSLI	GKGCMC	1 cut(s)	224
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	7 cut(s)	176, 194, 299, 321, 327, 353, 368
BsuRI	GGCC	2 cut(s)	185, 359
BtgI	CCRYGG	1 cut(s)	345
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	5 cut(s)	187, 302, 352, 379, 388
CfoI	GCGC	6 cut(s)	248, 332, 341, 377, 386, 401
Cfr10I	RCCGGY	1 cut(s)	198
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	2 cut(s)	11, 127
CspAI	ACCGGT	1 cut(s)	198
CviAII	CATG	7 cut(s)	32, 36, 283, 288, 321, 369, 387
CviQI	GTAC	2 cut(s)	11, 127
DdeI	CTNAG	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	88
EcoRV	GATATC	1 cut(s)	88
EcoT22I	ATGCAT	1 cut(s)	37
Esp3I	CGTCTC	1 cut(s)	397
FaeI	CATG	7 cut(s)	35, 39, 286, 291, 324, 372, 390
FaiI	YATR	7 cut(s)	33, 37, 284, 289, 322, 370, 388
FatI	CATG	7 cut(s)	31, 35, 282, 287, 320, 368, 386
FauI	CCCGC	3 cut(s)	163, 263, 370
Fnu4HI	GCNGC	9 cut(s)	190, 205, 208, 310, 313, 316, 342, 382, 402
Fsp4HI	GCNGC	9 cut(s)	190, 205, 208, 310, 313, 316, 342, 382, 402
FspI	TGCGCA	3 cut(s)	247, 385, 400
GlaI	GCGC	6 cut(s)	247, 331, 340, 376, 385, 400
GluI	GCNGC	9 cut(s)	190, 205, 208, 310, 313, 316, 342, 382, 402
HaeIII	GGCC	2 cut(s)	185, 359
HapII	CCGG	2 cut(s)	199, 225
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	6 cut(s)	248, 332, 341, 377, 386, 401
Hin1II	CATG	7 cut(s)	35, 39, 286, 291, 324, 372, 390
Hin6I	GCGC	6 cut(s)	246, 330, 339, 375, 384, 399
HinP1I	GCGC	6 cut(s)	246, 330, 339, 375, 384, 399
HinfI	GANTC	1 cut(s)	76
HpaII	CCGG	2 cut(s)	199, 225
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	11
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	8 cut(s)	20, 35, 192, 240, 309, 315, 324, 366
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	7 cut(s)	35, 39, 286, 291, 324, 372, 390
HspAI	GCGC	6 cut(s)	246, 330, 339, 375, 384, 399
LmnI	GCTCC	2 cut(s)	236, 296
LpnPI	CCDG	5 cut(s)	199, 212, 238, 307, 336
Lsp1109I	GCAGC	7 cut(s)	176, 194, 299, 321, 327, 353, 368
MaeII	ACGT	1 cut(s)	13
MbiI	CCGCTC	1 cut(s)	270
MhlI	GDGCHC	2 cut(s)	224, 306
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	4 cut(s)	64, 167, 244, 265
Mph1103I	ATGCAT	1 cut(s)	37
MspA1I	CMGCKG	3 cut(s)	170, 189, 312
MspI	CCGG	2 cut(s)	199, 225
MspR9I	CCNGG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	377
NciI	CCSGG	1 cut(s)	225
NlaIII	CATG	7 cut(s)	35, 39, 286, 291, 324, 372, 390
NlaIV	GGNNCC	1 cut(s)	232
NsbI	TGCGCA	3 cut(s)	247, 385, 400
NsiI	ATGCAT	1 cut(s)	37
NspI	RCATGY	4 cut(s)	35, 291, 372, 390
PaeI	GCATGC	1 cut(s)	390
PciI	ACATGT	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	76
PinAI	ACCGGT	1 cut(s)	198
PkrI	GCNGC	9 cut(s)	191, 206, 209, 311, 314, 317, 343, 383, 403
Ppu21I	YACGTR	1 cut(s)	14
PscI	ACATGT	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	232
PstI	CTGCAG	2 cut(s)	311, 317
PvuII	CAGCTG	2 cut(s)	189, 312
RsaI	GTAC	2 cut(s)	12, 128
RsaNI	GTAC	2 cut(s)	11, 127
SatI	GCNGC	9 cut(s)	190, 205, 208, 310, 313, 316, 342, 382, 402
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	2 cut(s)	224, 306
SetI	ASST	6 cut(s)	16, 56, 178, 191, 257, 314
SfcI	CTRYAG	2 cut(s)	307, 313
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SphI	GCATGC	1 cut(s)	390
SsiI	CCGC	4 cut(s)	170, 204, 270, 377
SspI	AATATT	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	114
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	1 cut(s)	74
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	76
TscAI	CASTG	1 cut(s)	311
TseI	GCWGC	8 cut(s)	189, 207, 309, 312, 315, 341, 381, 401
TspGWI	ACGGA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	311
XceI	RCATGY	4 cut(s)	35, 291, 372, 390
Zsp2I	ATGCAT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.