Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009194

Physical Location & Seq

Genomic Coordinates Reverse (-)

46187433 .. 46191547

Gene Structure 4115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG250000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCAGAAACAGTTGGAGGTGTGAAGATGTCCTGCAACGATAGCTGTGGCTGCCCTGTTCCGTGCCCTGGCGGCGTGTCCTGTAGGTGCAGAACCAGGACGGAGGCCACGAGTGGGGACGGCCACATGAAGTGCTCGTGCGGCGAGCACTGTGGCTGCAACCCGTGCGCTTGTGCTAAGAGCGTCGTCTCTGCCGGAGTAGGCAGGGCCTACTGCAGGCTAGCCTTAGTAATTAAGGACACTGCAGAAGTGCTTCTAGTCCATACAAAGAAAGCCTTGAGAAATTTTGCTAGCTCAAGCAGGGACAAGACTATGTACATGTTCTCTAAAGATCTGAACTTCGATGACAGGTGCACAACCAGGATCGACCCTGCAACTGTGGACAACCACAAGAAATGCTCCTGCGGCGAGCATTGTGGCTGCAACCCGTGCACTTGTGCTAGAAAAGTTGCCACCACTGGGGTTGGCAAGGCCTACTGCAAGTGCGGTGATGCTTGCAACTGTGTCTCATGCGCTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0016020 GO:0030001 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0072511

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallothio_PEC

Protein Analysis

173

Amino Acids

18.14

Weight (kDa)

8.55

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallothio_PEC	PF02068	12 - 73	1.2e-20	Plant PEC family metallothionein
Metallothio_PEC	PF02068	117 - 172	1.8e-15	Plant PEC family metallothionein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23240 AT2G23240 AT2G42000 AT2G42000
fragaria_vesca	FvH4_2g16730
malus_domestica	MD05G1135300.v1.1
prunus_persica	Prupe.8G179200_v2.0.a1
pyrus_communis	pycom05g13190
rosa_chinensis	RchiOBHm_Chr6g0280851
rosa_multiflora	Rmu_sc0023262.1_g000005 Rmu_ssc0000024.1_g000007
rosa_roxburghii	Rroxscaffold_7G00187560
rosa_rugosa	Rorug06G0135100
rosa_samantha	Rh6AG248400 Rh6AG248500 Rh6BG250000 Rh6CG251100 Rh6CG251200 Rh6DG242700 Rh6DG242800
rosa_wichuraiana	Rw6G021470 Rw6G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	72, 141, 405, 486
AclWI	GGATC	1 cut(s)	371
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	283
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	4 cut(s)	68, 114, 216, 459
AflIII	ACRYGT	1 cut(s)	318
AjnI	CCWGG	3 cut(s)	67, 95, 359
AluBI	AGCT	2 cut(s)	45, 294
AluI	AGCT	2 cut(s)	45, 294
Alw21I	GWGCWC	4 cut(s)	137, 150, 356, 434
Alw26I	GTCTC	2 cut(s)	193, 511
Alw44I	GTGCAC	2 cut(s)	352, 430
AlwI	GGATC	1 cut(s)	371
AoxI	GGCC	4 cut(s)	105, 121, 207, 471
ApaLI	GTGCAC	2 cut(s)	352, 430
ApeKI	GCWGC	4 cut(s)	51, 156, 420, 515
ApoI	RAATTY	1 cut(s)	283
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	170, 515
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	500
AsuNHI	GCTAGC	2 cut(s)	220, 290
BaeGI	GKGCMC	3 cut(s)	68, 356, 434
BauI	CACGAG	2 cut(s)	109, 136
Bbv12I	GWGCWC	4 cut(s)	137, 150, 356, 434
BbvI	GCAGC	4 cut(s)	38, 143, 407, 502
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	3 cut(s)	69, 97, 361
BcoDI	GTCTC	2 cut(s)	193, 511
BfaI	CTAG	4 cut(s)	221, 257, 291, 441
BfmI	CTRYAG	3 cut(s)	82, 214, 243
BglI	GCCNNNNNGGC	1 cut(s)	72
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	7 cut(s)	52, 73, 142, 157, 406, 421, 516
BlsI	GCNGC	7 cut(s)	53, 74, 143, 158, 407, 422, 517
Bme1390I	CCNGG	3 cut(s)	69, 97, 361
BmgT120I	GGNCC	1 cut(s)	207
BmrFI	CCNGG	3 cut(s)	69, 97, 361
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	1 cut(s)	481
BmtI	GCTAGC	2 cut(s)	224, 294
BmuI	ACTGGG	1 cut(s)	468
BpuEI	CTTGAG	2 cut(s)	280, 298
BsaJI	CCNNGG	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 114, 216, 459
Bse1I	ACTGG	1 cut(s)	463
BseBI	CCWGG	3 cut(s)	69, 97, 361
BseDI	CCNNGG	1 cut(s)	67
BseLI	CCNNNNNNNGG	4 cut(s)	68, 114, 216, 459
BseNI	ACTGG	1 cut(s)	463
BseSI	GKGCMC	3 cut(s)	68, 356, 434
BseXI	GCAGC	4 cut(s)	38, 143, 407, 502
BsgI	GTGCAG	1 cut(s)	109
BshFI	GGCC	4 cut(s)	107, 123, 209, 473
BsiHKAI	GWGCWC	4 cut(s)	137, 150, 356, 434
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	2 cut(s)	131, 317
BslI	CCNNNNNNNGG	4 cut(s)	68, 114, 216, 459
BsmAI	GTCTC	2 cut(s)	193, 511
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	2 cut(s)	131, 317
BsnI	GGCC	4 cut(s)	107, 123, 209, 473
Bsp1286I	GDGCHC	5 cut(s)	68, 137, 150, 356, 434
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	331, 363
BspACI	CCGC	4 cut(s)	72, 141, 405, 486
BspANI	GGCC	4 cut(s)	107, 123, 209, 473
BspMAI	CTGCAG	2 cut(s)	218, 247
BspOI	GCTAGC	2 cut(s)	224, 294
BspPI	GGATC	1 cut(s)	371
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	2 cut(s)	331, 363
BssSI	CACGAG	2 cut(s)	109, 136
Bst2BI	CACGAG	2 cut(s)	109, 136
Bst2UI	CCWGG	3 cut(s)	69, 97, 361
Bst4CI	ACNGT	4 cut(s)	13, 152, 379, 503
BstAPI	GCANNNNNTGC	2 cut(s)	165, 429
BstAUI	TGTACA	1 cut(s)	315
BstC8I	GCNNGC	6 cut(s)	146, 218, 222, 292, 410, 496
BstDEI	CTNAG	2 cut(s)	177, 226
BstENI	CCTNNNNNAGG	1 cut(s)	214
BstHHI	GCGC	2 cut(s)	170, 515
BstKTI	GATC	2 cut(s)	334, 366
BstMAI	GTCTC	2 cut(s)	193, 511
BstMBI	GATC	2 cut(s)	331, 363
BstMWI	GCNNNNNNNGC	7 cut(s)	42, 51, 72, 141, 165, 405, 429
BstNI	CCWGG	3 cut(s)	69, 97, 361
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	3 cut(s)	67, 95, 359
BstSFI	CTRYAG	3 cut(s)	82, 214, 243
BstSLI	GKGCMC	3 cut(s)	68, 356, 434
BstV1I	GCAGC	4 cut(s)	38, 143, 407, 502
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	4 cut(s)	107, 123, 209, 473
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	3 cut(s)	148, 240, 456
Cac8I	GCNNGC	6 cut(s)	146, 218, 222, 292, 410, 496
CfoI	GCGC	2 cut(s)	170, 515
Cfr13I	GGNCC	1 cut(s)	207
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	316
CspCI	CAANNNNNGTGG	2 cut(s)	445, 480
CviAII	CATG	3 cut(s)	127, 319, 510
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	177, 226
DpnI	GATC	2 cut(s)	333, 365
DpnII	GATC	2 cut(s)	331, 363
EaeI	YGGCCR	1 cut(s)	121
Eco147I	AGGCCT	1 cut(s)	473
EcoNI	CCTNNNNNAGG	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	207
EcoRII	CCWGG	3 cut(s)	67, 95, 359
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	3 cut(s)	130, 322, 513
FaiI	YATR	5 cut(s)	128, 264, 314, 320, 511
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	2 cut(s)	131, 317
FatI	CATG	3 cut(s)	126, 318, 509
Fnu4HI	GCNGC	7 cut(s)	52, 73, 142, 157, 406, 421, 516
Fsp4HI	GCNGC	7 cut(s)	52, 73, 142, 157, 406, 421, 516
FspBI	CTAG	4 cut(s)	221, 257, 291, 441
GlaI	GCGC	2 cut(s)	169, 514
GluI	GCNGC	7 cut(s)	52, 73, 142, 157, 406, 421, 516
HaeIII	GGCC	4 cut(s)	107, 123, 209, 473
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	2 cut(s)	170, 515
Hin1II	CATG	3 cut(s)	130, 322, 513
Hin6I	GCGC	2 cut(s)	168, 513
HinP1I	GCGC	2 cut(s)	168, 513
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	3 cut(s)	354, 382, 432
Hpy188I	TCNGA	1 cut(s)	336
Hpy8I	GTNNAC	3 cut(s)	354, 382, 432
Hpy99I	CGWCG	1 cut(s)	188
HpyCH4III	ACNGT	4 cut(s)	13, 152, 379, 503
HpyF10VI	GCNNNNNNNGC	7 cut(s)	42, 51, 72, 141, 165, 405, 429
HpyF3I	CTNAG	2 cut(s)	177, 226
Hsp92II	CATG	3 cut(s)	130, 322, 513
HspAI	GCGC	2 cut(s)	168, 513
Kzo9I	GATC	2 cut(s)	331, 363
LmnI	GCTCC	1 cut(s)	404
Lsp1109I	GCAGC	4 cut(s)	38, 143, 407, 502
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	4 cut(s)	221, 257, 291, 441
MalI	GATC	2 cut(s)	333, 365
MboI	GATC	2 cut(s)	331, 363
MboII	GAAGA	1 cut(s)	37
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	5 cut(s)	68, 137, 150, 356, 434
MluCI	AATT	2 cut(s)	231, 283
MnlI	CCTC	2 cut(s)	11, 97
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	1 cut(s)	234
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	3 cut(s)	69, 97, 361
MvaI	CCWGG	3 cut(s)	69, 97, 361
MwoI	GCNNNNNNNGC	7 cut(s)	42, 51, 72, 141, 165, 405, 429
NdeII	GATC	2 cut(s)	331, 363
NheI	GCTAGC	2 cut(s)	220, 290
NlaIII	CATG	3 cut(s)	130, 322, 513
NspI	RCATGY	1 cut(s)	322
PceI	AGGCCT	1 cut(s)	473
PciI	ACATGT	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	252
PkrI	GCNGC	7 cut(s)	53, 74, 143, 158, 407, 422, 517
PscI	ACATGT	1 cut(s)	318
Psp6I	CCWGG	3 cut(s)	67, 95, 359
PspGI	CCWGG	3 cut(s)	67, 95, 359
PspPI	GGNCC	1 cut(s)	207
PstI	CTGCAG	2 cut(s)	218, 247
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	7 cut(s)	52, 73, 142, 157, 406, 421, 516
Sau3AI	GATC	2 cut(s)	331, 363
Sau96I	GGNCC	1 cut(s)	207
ScrFI	CCNGG	3 cut(s)	69, 97, 361
SduI	GDGCHC	5 cut(s)	68, 137, 150, 356, 434
SetI	ASST	5 cut(s)	22, 47, 89, 296, 353
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	3 cut(s)	82, 214, 243
SmlI	CTYRAG	2 cut(s)	277, 295
SmoI	CTYRAG	2 cut(s)	277, 295
Sse9I	AATT	2 cut(s)	231, 283
SseBI	AGGCCT	1 cut(s)	473
SsiI	CCGC	4 cut(s)	72, 141, 405, 486
SspMI	CTAG	4 cut(s)	221, 257, 291, 441
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	3 cut(s)	67, 95, 359
TaaI	ACNGT	4 cut(s)	13, 152, 379, 503
TaqI	TCGA	2 cut(s)	342, 366
TasI	AATT	2 cut(s)	231, 283
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	3 cut(s)	75, 144, 408
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	3 cut(s)	155, 247, 463
TseI	GCWGC	4 cut(s)	51, 156, 420, 515
TspDTI	ATGAA	1 cut(s)	143
TspGWI	ACGGA	2 cut(s)	51, 116
TspRI	CASTG	3 cut(s)	155, 247, 463
VneI	GTGCAC	2 cut(s)	352, 430
XagI	CCTNNNNNAGG	1 cut(s)	214
XapI	RAATTY	1 cut(s)	283
XceI	RCATGY	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	4 cut(s)	221, 257, 291, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.