Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000024.1

Orthogroup ID

OG0009194

Physical Location & Seq

Genomic Coordinates Forward (+)

37507 .. 39300

Gene Structure 1794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000024.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggcagaaacagttggaggtgtgaagatgtcctgcaacgatagctgtggctgccctgttccgtgccctggcggcgtgtcctgtagaaccaggacggaggccacgagtggggacggccacatgaagtgctcgtgcggcgagcactgtggctgcaacccgtgcgcttgtgctaagagcgtcgtctctaccggagtaggcagggcctactgcaggtgcggcgagggtttggagattgcagtaacttgctctgcacatgctgcagtcctttccgatgcacttgtattgtactttttgccttgctgttcatcaaagccccacttcgcttctctgcgagtcctcagcatcaagattgctacaagcccacctttgttccctaccttctccatatttgtttttgctgcgctgactgtgtactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0016020 GO:0030001 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0072511

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallothio_PEC

Protein Analysis

138

Amino Acids

14.21

Weight (kDa)

7.87

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23240 AT2G23240 AT2G42000 AT2G42000
fragaria_vesca	FvH4_2g16730
malus_domestica	MD05G1135300.v1.1
prunus_persica	Prupe.8G179200_v2.0.a1
pyrus_communis	pycom05g13190
rosa_chinensis	RchiOBHm_Chr6g0280851
rosa_multiflora	Rmu_sc0023262.1_g000005 Rmu_ssc0000024.1_g000007
rosa_roxburghii	Rroxscaffold_7G00187560
rosa_rugosa	Rorug06G0135100
rosa_samantha	Rh6AG248400 Rh6AG248500 Rh6BG250000 Rh6CG251100 Rh6CG251200 Rh6DG242700 Rh6DG242800
rosa_wichuraiana	Rw6G021470 Rw6G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	201
Acc36I	ACCTGC	1 cut(s)	201
AciI	CCGC	3 cut(s)	72, 135, 216
AcoI	YGGCCR	1 cut(s)	115
AfaI	GTAC	2 cut(s)	287, 413
AfiI	CCNNNNNNNGG	3 cut(s)	68, 108, 210
AjnI	CCWGG	2 cut(s)	67, 89
AluBI	AGCT	1 cut(s)	45
AluI	AGCT	1 cut(s)	45
Alw21I	GWGCWC	2 cut(s)	131, 144
Alw26I	GTCTC	1 cut(s)	187
AoxI	GGCC	3 cut(s)	99, 115, 201
ApeKI	GCWGC	4 cut(s)	51, 150, 257, 398
AspLEI	GCGC	2 cut(s)	164, 403
AspS9I	GGNCC	1 cut(s)	201
BaeGI	GKGCMC	1 cut(s)	68
BauI	CACGAG	2 cut(s)	103, 130
Bbv12I	GWGCWC	2 cut(s)	131, 144
BbvCI	CCTCAGC	1 cut(s)	338
BbvI	GCAGC	4 cut(s)	38, 137, 244, 385
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	2 cut(s)	69, 91
BcoDI	GTCTC	1 cut(s)	187
BfmI	CTRYAG	3 cut(s)	82, 208, 258
BfuAI	ACCTGC	1 cut(s)	201
BglI	GCCNNNNNGGC	1 cut(s)	72
BisI	GCNGC	7 cut(s)	52, 73, 136, 151, 217, 258, 399
BlsI	GCNGC	7 cut(s)	53, 74, 137, 152, 218, 259, 400
Bme1390I	CCNGG	2 cut(s)	69, 91
BmgT120I	GGNCC	1 cut(s)	201
BmrFI	CCNGG	2 cut(s)	69, 91
BmsI	GCATC	2 cut(s)	262, 351
Bpu10I	CCTNAGC	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	67
BsaWI	WCCGGW	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 108, 210
BseBI	CCWGG	2 cut(s)	69, 91
BseDI	CCNNGG	1 cut(s)	67
BseLI	CCNNNNNNNGG	3 cut(s)	68, 108, 210
BseMII	CTCAG	1 cut(s)	352
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	4 cut(s)	38, 137, 244, 385
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	101, 117, 203
BsiHKAI	GWGCWC	2 cut(s)	131, 144
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	3 cut(s)	68, 108, 210
BsmAI	GTCTC	1 cut(s)	187
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	3 cut(s)	101, 117, 203
Bsp1286I	GDGCHC	3 cut(s)	68, 131, 144
BspACI	CCGC	3 cut(s)	72, 135, 216
BspANI	GGCC	3 cut(s)	101, 117, 203
BspCNI	CTCAG	1 cut(s)	351
BspMAI	CTGCAG	2 cut(s)	212, 262
BspMI	ACCTGC	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	67
BssSI	CACGAG	2 cut(s)	103, 130
Bst2BI	CACGAG	2 cut(s)	103, 130
Bst2UI	CCWGG	2 cut(s)	69, 91
Bst4CI	ACNGT	3 cut(s)	13, 146, 409
BstAPI	GCANNNNNTGC	2 cut(s)	159, 257
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	2 cut(s)	171, 338
BstENI	CCTNNNNNAGG	1 cut(s)	208
BstHHI	GCGC	2 cut(s)	164, 403
BstMAI	GTCTC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	7 cut(s)	42, 51, 72, 135, 159, 216, 257
BstNI	CCWGG	2 cut(s)	69, 91
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	67, 89
BstSFI	CTRYAG	3 cut(s)	82, 208, 258
BstSLI	GKGCMC	1 cut(s)	68
BstV1I	GCAGC	4 cut(s)	38, 137, 244, 385
BsuRI	GGCC	3 cut(s)	101, 117, 203
BtsIMutI	CAGTG	1 cut(s)	142
BveI	ACCTGC	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	140
CfoI	GCGC	2 cut(s)	164, 403
Cfr13I	GGNCC	1 cut(s)	201
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	286, 412
CviAII	CATG	2 cut(s)	121, 254
CviJI	RGCY	8 cut(s)	45, 51, 101, 117, 150, 203, 313, 360
CviKI_1	RGCY	8 cut(s)	45, 51, 101, 117, 150, 203, 313, 360
CviQI	GTAC	2 cut(s)	286, 412
DdeI	CTNAG	2 cut(s)	171, 338
EaeI	YGGCCR	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	67, 89
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	2 cut(s)	124, 257
FaiI	YATR	3 cut(s)	122, 255, 386
FalI	AAGNNNNNCTT	4 cut(s)	302, 334, 349, 381
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	2 cut(s)	120, 253
Fnu4HI	GCNGC	7 cut(s)	52, 73, 136, 151, 217, 258, 399
Fsp4HI	GCNGC	7 cut(s)	52, 73, 136, 151, 217, 258, 399
GlaI	GCGC	2 cut(s)	163, 402
GluI	GCNGC	7 cut(s)	52, 73, 136, 151, 217, 258, 399
HaeIII	GGCC	3 cut(s)	101, 117, 203
HapII	CCGG	1 cut(s)	189
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	2 cut(s)	164, 403
Hin1II	CATG	2 cut(s)	124, 257
Hin6I	GCGC	2 cut(s)	162, 401
HinP1I	GCGC	2 cut(s)	162, 401
HinfI	GANTC	1 cut(s)	333
HpaII	CCGG	1 cut(s)	189
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	1 cut(s)	346
Hpy8I	GTNNAC	1 cut(s)	412
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	3 cut(s)	13, 146, 409
HpyCH4V	TGCA	7 cut(s)	36, 153, 210, 236, 251, 260, 275
HpyF10VI	GCNNNNNNNGC	7 cut(s)	42, 51, 72, 135, 159, 216, 257
HpyF3I	CTNAG	2 cut(s)	171, 338
Hsp92II	CATG	2 cut(s)	124, 257
HspAI	GCGC	2 cut(s)	162, 401
Lsp1109I	GCAGC	4 cut(s)	38, 137, 244, 385
LweI	GCATC	2 cut(s)	262, 351
MaeIII	GTNAC	1 cut(s)	238
MboII	GAAGA	1 cut(s)	37
MhlI	GDGCHC	3 cut(s)	68, 131, 144
MlyI	GAGTC	1 cut(s)	342
MnlI	CCTC	4 cut(s)	11, 91, 214, 347
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	2 cut(s)	69, 91
MvaI	CCWGG	2 cut(s)	69, 91
MwoI	GCNNNNNNNGC	7 cut(s)	42, 51, 72, 135, 159, 216, 257
NlaIII	CATG	2 cut(s)	124, 257
NspI	RCATGY	1 cut(s)	257
PaqCI	CACCTGC	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PkrI	GCNGC	7 cut(s)	53, 74, 137, 152, 218, 259, 400
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	67, 89
PspGI	CCWGG	2 cut(s)	67, 89
PspPI	GGNCC	1 cut(s)	201
PstI	CTGCAG	2 cut(s)	212, 262
RsaI	GTAC	2 cut(s)	287, 413
RsaNI	GTAC	2 cut(s)	286, 412
SatI	GCNGC	7 cut(s)	52, 73, 136, 151, 217, 258, 399
Sau96I	GGNCC	1 cut(s)	201
SchI	GAGTC	1 cut(s)	342
ScrFI	CCNGG	2 cut(s)	69, 91
SduI	GDGCHC	3 cut(s)	68, 131, 144
SetI	ASST	5 cut(s)	22, 47, 215, 367, 380
SfaNI	GCATC	2 cut(s)	262, 351
SfcI	CTRYAG	3 cut(s)	82, 208, 258
SsiI	CCGC	3 cut(s)	72, 135, 216
StyD4I	CCNGG	2 cut(s)	67, 89
TaaI	ACNGT	3 cut(s)	13, 146, 409
TatI	WGTACW	2 cut(s)	285, 411
TauI	GCSGC	3 cut(s)	75, 138, 219
TscAI	CASTG	1 cut(s)	149
TseI	GCWGC	4 cut(s)	51, 150, 257, 398
TspDTI	ATGAA	2 cut(s)	137, 294
TspGWI	ACGGA	2 cut(s)	51, 110
TspRI	CASTG	1 cut(s)	149
XagI	CCTNNNNNAGG	1 cut(s)	208
XceI	RCATGY	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.