Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009194

Physical Location & Seq

Genomic Coordinates Reverse (-)

44255306 .. 44258942

Gene Structure 3637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25187

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCAGAAACAGTTGGAGGTGTGAAGATGTCCTGCAACGATAGCTGTGGCTGCCCTGTTCCGTGCCCTGGCGGCGTGTCCTGTAGGTGCATAACCAGGACGGAGGCCACGAGTGGGGACGGCCACATGAAGTGCTCGTGCGGCGAGCACTGTGGCTGCAACCCGTGCGCTTGTGCTAAGAGCGTCGTCTCTACCGGAGTAGGCAGGGCCTACTGCAGGTGCGGCGAGGGTTGTACCTGTGACACTGCAGAAGTGCTTCTAGTCCATACAAAGAAAGCCTTGAGAAATTTTGCTAGCTCAAGCAGGGACAAGACTATGTACATGTTCTCTAAAGATCTGAACTTCGATGACAGGTGCACAACCAGGACCGACCCTGCGACTGTGGACAACCACAAGAAATGCTCCTGCGGCGAGCATTGTGGCTGTAACCCGTGCACTTGTGCTAGAAAAGTTGCCACCACTGGGGTTGGCAAGGCCTACTGCAAGTGCGGTGATGCTTGCAACTGTGTCTCATGCGCTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0016020 GO:0030001 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0072511

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallothio_PEC

Protein Analysis

174

Amino Acids

18.13

Weight (kDa)

8.2

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallothio_PEC	PF02068	12 - 83	1.5e-23	Plant PEC family metallothionein
Metallothio_PEC	PF02068	118 - 173	1.7e-15	Plant PEC family metallothionein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23240 AT2G23240 AT2G42000 AT2G42000
fragaria_vesca	FvH4_2g16730
malus_domestica	MD05G1135300.v1.1
prunus_persica	Prupe.8G179200_v2.0.a1
pyrus_communis	pycom05g13190
rosa_chinensis	RchiOBHm_Chr6g0280851
rosa_multiflora	Rmu_sc0023262.1_g000005 Rmu_ssc0000024.1_g000007
rosa_roxburghii	Rroxscaffold_7G00187560
rosa_rugosa	Rorug06G0135100
rosa_samantha	Rh6AG248400 Rh6AG248500 Rh6BG250000 Rh6CG251100 Rh6CG251200 Rh6DG242700 Rh6DG242800
rosa_wichuraiana	Rw6G021470 Rw6G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	207
Acc36I	ACCTGC	1 cut(s)	207
AciI	CCGC	5 cut(s)	72, 141, 222, 408, 489
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	286
AfaI	GTAC	2 cut(s)	235, 320
AfiI	CCNNNNNNNGG	4 cut(s)	68, 114, 216, 462
AflIII	ACRYGT	1 cut(s)	321
AjnI	CCWGG	3 cut(s)	67, 95, 362
AluBI	AGCT	2 cut(s)	45, 297
AluI	AGCT	2 cut(s)	45, 297
Alw21I	GWGCWC	4 cut(s)	137, 150, 359, 437
Alw26I	GTCTC	2 cut(s)	193, 514
Alw44I	GTGCAC	2 cut(s)	355, 433
AoxI	GGCC	4 cut(s)	105, 121, 207, 474
ApaLI	GTGCAC	2 cut(s)	355, 433
ApeKI	GCWGC	3 cut(s)	51, 156, 518
ApoI	RAATTY	1 cut(s)	286
Asp700I	GAANNNNTTC	1 cut(s)	255
AspLEI	GCGC	2 cut(s)	170, 518
AspS9I	GGNCC	2 cut(s)	207, 366
AsuHPI	GGTGA	1 cut(s)	503
AsuNHI	GCTAGC	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	366
BaeGI	GKGCMC	3 cut(s)	68, 359, 437
BauI	CACGAG	2 cut(s)	109, 136
Bbv12I	GWGCWC	4 cut(s)	137, 150, 359, 437
BbvI	GCAGC	3 cut(s)	38, 143, 505
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	3 cut(s)	69, 97, 364
BcoDI	GTCTC	2 cut(s)	193, 514
BfaI	CTAG	3 cut(s)	260, 294, 444
BfmI	CTRYAG	3 cut(s)	82, 214, 246
BfuAI	ACCTGC	1 cut(s)	207
BglI	GCCNNNNNGGC	1 cut(s)	72
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	7 cut(s)	52, 73, 142, 157, 223, 409, 519
BlsI	GCNGC	7 cut(s)	53, 74, 143, 158, 224, 410, 520
Bme1390I	CCNGG	3 cut(s)	69, 97, 364
Bme18I	GGWCC	1 cut(s)	366
BmgT120I	GGNCC	2 cut(s)	207, 366
BmrFI	CCNGG	3 cut(s)	69, 97, 364
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	1 cut(s)	484
BmtI	GCTAGC	1 cut(s)	297
BmuI	ACTGGG	1 cut(s)	471
BpuEI	CTTGAG	2 cut(s)	283, 301
BsaJI	CCNNGG	1 cut(s)	67
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 114, 216, 462
Bse1I	ACTGG	1 cut(s)	466
BseBI	CCWGG	3 cut(s)	69, 97, 364
BseDI	CCNNGG	1 cut(s)	67
BseLI	CCNNNNNNNGG	4 cut(s)	68, 114, 216, 462
BseNI	ACTGG	1 cut(s)	466
BseSI	GKGCMC	3 cut(s)	68, 359, 437
BseXI	GCAGC	3 cut(s)	38, 143, 505
BshFI	GGCC	4 cut(s)	107, 123, 209, 476
BsiHKAI	GWGCWC	4 cut(s)	137, 150, 359, 437
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	2 cut(s)	131, 320
BslI	CCNNNNNNNGG	4 cut(s)	68, 114, 216, 462
BsmAI	GTCTC	2 cut(s)	193, 514
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	2 cut(s)	131, 320
BsnI	GGCC	4 cut(s)	107, 123, 209, 476
Bsp1286I	GDGCHC	5 cut(s)	68, 137, 150, 359, 437
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	334
BspACI	CCGC	5 cut(s)	72, 141, 222, 408, 489
BspANI	GGCC	4 cut(s)	107, 123, 209, 476
BspMAI	CTGCAG	2 cut(s)	218, 250
BspMI	ACCTGC	1 cut(s)	207
BspOI	GCTAGC	1 cut(s)	297
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	1 cut(s)	334
BssSI	CACGAG	2 cut(s)	109, 136
Bst2BI	CACGAG	2 cut(s)	109, 136
Bst2UI	CCWGG	3 cut(s)	69, 97, 364
Bst4CI	ACNGT	4 cut(s)	13, 152, 382, 506
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstAUI	TGTACA	1 cut(s)	318
BstC8I	GCNNGC	4 cut(s)	146, 295, 413, 499
BstDEI	CTNAG	1 cut(s)	177
BstENI	CCTNNNNNAGG	1 cut(s)	214
BstHHI	GCGC	2 cut(s)	170, 518
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	2 cut(s)	193, 514
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	7 cut(s)	42, 51, 72, 141, 165, 222, 408
BstNI	CCWGG	3 cut(s)	69, 97, 364
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	3 cut(s)	67, 95, 362
BstSFI	CTRYAG	3 cut(s)	82, 214, 246
BstSLI	GKGCMC	3 cut(s)	68, 359, 437
BstV1I	GCAGC	3 cut(s)	38, 143, 505
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	4 cut(s)	107, 123, 209, 476
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	3 cut(s)	148, 243, 459
BveI	ACCTGC	1 cut(s)	207
Cac8I	GCNNGC	4 cut(s)	146, 295, 413, 499
CfoI	GCGC	2 cut(s)	170, 518
Cfr13I	GGNCC	2 cut(s)	207, 366
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	234, 319
CspCI	CAANNNNNGTGG	2 cut(s)	448, 483
CviAII	CATG	3 cut(s)	127, 322, 513
CviQI	GTAC	2 cut(s)	234, 319
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	121
Eco147I	AGGCCT	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	366
EcoNI	CCTNNNNNAGG	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	207
EcoRII	CCWGG	3 cut(s)	67, 95, 362
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	3 cut(s)	130, 325, 516
FaiI	YATR	6 cut(s)	92, 128, 267, 317, 323, 514
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	2 cut(s)	131, 320
FatI	CATG	3 cut(s)	126, 321, 512
Fnu4HI	GCNGC	7 cut(s)	52, 73, 142, 157, 223, 409, 519
Fsp4HI	GCNGC	7 cut(s)	52, 73, 142, 157, 223, 409, 519
FspBI	CTAG	3 cut(s)	260, 294, 444
GlaI	GCGC	2 cut(s)	169, 517
GluI	GCNGC	7 cut(s)	52, 73, 142, 157, 223, 409, 519
HaeIII	GGCC	4 cut(s)	107, 123, 209, 476
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	2 cut(s)	170, 518
Hin1II	CATG	3 cut(s)	130, 325, 516
Hin6I	GCGC	2 cut(s)	168, 516
HinP1I	GCGC	2 cut(s)	168, 516
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	3 cut(s)	357, 385, 435
Hpy188I	TCNGA	1 cut(s)	339
Hpy8I	GTNNAC	3 cut(s)	357, 385, 435
Hpy99I	CGWCG	1 cut(s)	188
HpyCH4III	ACNGT	4 cut(s)	13, 152, 382, 506
HpyCH4V	TGCA	9 cut(s)	36, 90, 159, 216, 248, 357, 435, 483, 501
HpyF10VI	GCNNNNNNNGC	7 cut(s)	42, 51, 72, 141, 165, 222, 408
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	130, 325, 516
HspAI	GCGC	2 cut(s)	168, 516
Kzo9I	GATC	1 cut(s)	334
LmnI	GCTCC	1 cut(s)	407
Lsp1109I	GCAGC	3 cut(s)	38, 143, 505
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	3 cut(s)	260, 294, 444
MaeIII	GTNAC	2 cut(s)	239, 425
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	1 cut(s)	37
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	5 cut(s)	68, 137, 150, 359, 437
MluCI	AATT	1 cut(s)	286
MnlI	CCTC	3 cut(s)	11, 97, 220
MroXI	GAANNNNTTC	1 cut(s)	255
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	3 cut(s)	69, 97, 364
MvaI	CCWGG	3 cut(s)	69, 97, 364
MwoI	GCNNNNNNNGC	7 cut(s)	42, 51, 72, 141, 165, 222, 408
NdeII	GATC	1 cut(s)	334
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	3 cut(s)	130, 325, 516
NmuCI	GTSAC	1 cut(s)	239
NspI	RCATGY	1 cut(s)	325
PaqCI	CACCTGC	1 cut(s)	207
PceI	AGGCCT	1 cut(s)	476
PciI	ACATGT	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	255
PkrI	GCNGC	7 cut(s)	53, 74, 143, 158, 224, 410, 520
PscI	ACATGT	1 cut(s)	321
Psp6I	CCWGG	3 cut(s)	67, 95, 362
PspGI	CCWGG	3 cut(s)	67, 95, 362
PspPI	GGNCC	2 cut(s)	207, 366
PstI	CTGCAG	2 cut(s)	218, 250
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	2 cut(s)	235, 320
RsaNI	GTAC	2 cut(s)	234, 319
SatI	GCNGC	7 cut(s)	52, 73, 142, 157, 223, 409, 519
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	2 cut(s)	207, 366
ScrFI	CCNGG	3 cut(s)	69, 97, 364
SduI	GDGCHC	5 cut(s)	68, 137, 150, 359, 437
SetI	ASST	7 cut(s)	22, 47, 89, 221, 239, 299, 356
SfaNI	GCATC	1 cut(s)	484
SfcI	CTRYAG	3 cut(s)	82, 214, 246
SinI	GGWCC	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	280, 298
SmoI	CTYRAG	2 cut(s)	280, 298
Sse9I	AATT	1 cut(s)	286
SseBI	AGGCCT	1 cut(s)	476
SsiI	CCGC	5 cut(s)	72, 141, 222, 408, 489
SspMI	CTAG	3 cut(s)	260, 294, 444
StuI	AGGCCT	1 cut(s)	476
StyD4I	CCNGG	3 cut(s)	67, 95, 362
TaaI	ACNGT	4 cut(s)	13, 152, 382, 506
TaqI	TCGA	1 cut(s)	345
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	1 cut(s)	286
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	4 cut(s)	75, 144, 225, 411
TscAI	CASTG	3 cut(s)	155, 250, 466
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	3 cut(s)	51, 156, 518
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	143
TspGWI	ACGGA	2 cut(s)	51, 116
TspRI	CASTG	3 cut(s)	155, 250, 466
VneI	GTGCAC	2 cut(s)	355, 433
VpaK11BI	GGWCC	1 cut(s)	366
XagI	CCTNNNNNAGG	1 cut(s)	214
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	1 cut(s)	325
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	3 cut(s)	260, 294, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.