Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009194

Physical Location & Seq

Genomic Coordinates Reverse (-)

42150418 .. 42151223

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG251100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCTACTCTGGGAGGAGCCCGACTCACCACCTGCAACGATAGGTGTGGCTGCCCTACTCCATGCCCTGGCGGCGTGCCTTGCAGGTGCACAACCAGGACCAACCCTGCGACTGTGGACGACCACAAAAAATGCTCCTGCGGCGAGCATTGTGGCTGCAGCCCGTGCACTTGTGCTAGGAAAGTTGTCAGTGACAACTTGTCACCACTGGGGTTGGCAAGGCCTACTGCAAGTGCGGTGATGCTTGCAACTGTGTCTCATGCGCTGCCTAAAAAAGCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0016020 GO:0030001 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0072511

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallothio_PEC

Protein Analysis

94

Amino Acids

9.63

Weight (kDa)

8.81

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallothio_PEC	PF02068	12 - 64	3.3e-18	Plant PEC family metallothionein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23240 AT2G23240 AT2G42000 AT2G42000
fragaria_vesca	FvH4_2g16730
malus_domestica	MD05G1135300.v1.1
prunus_persica	Prupe.8G179200_v2.0.a1
pyrus_communis	pycom05g13190
rosa_chinensis	RchiOBHm_Chr6g0280851
rosa_multiflora	Rmu_sc0023262.1_g000005 Rmu_ssc0000024.1_g000007
rosa_roxburghii	Rroxscaffold_7G00187560
rosa_rugosa	Rorug06G0135100
rosa_samantha	Rh6AG248400 Rh6AG248500 Rh6BG250000 Rh6CG251100 Rh6CG251200 Rh6DG242700 Rh6DG242800
rosa_wichuraiana	Rw6G021470 Rw6G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	41, 75
Acc36I	ACCTGC	2 cut(s)	41, 75
AccB7I	CCANNNNNTGG	1 cut(s)	68
AciI	CCGC	3 cut(s)	72, 141, 236
AfiI	CCNNNNNNNGG	1 cut(s)	68
AhdI	GACNNNNNGTC	1 cut(s)	199
AjnI	CCWGG	2 cut(s)	67, 95
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
Alw21I	GWGCWC	2 cut(s)	92, 170
Alw26I	GTCTC	1 cut(s)	261
Alw44I	GTGCAC	2 cut(s)	88, 166
AoxI	GGCC	1 cut(s)	221
ApaLI	GTGCAC	2 cut(s)	88, 166
ApeKI	GCWGC	4 cut(s)	51, 156, 159, 265
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	99
AsuHPI	GGTGA	3 cut(s)	19, 195, 250
AvaII	GGWCC	1 cut(s)	99
BaeGI	GKGCMC	2 cut(s)	92, 170
BanII	GRGCYC	1 cut(s)	22
Bbv12I	GWGCWC	2 cut(s)	92, 170
BbvI	GCAGC	4 cut(s)	38, 143, 171, 252
BciT130I	CCWGG	2 cut(s)	69, 97
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	157
BfuAI	ACCTGC	2 cut(s)	41, 75
BglI	GCCNNNNNGGC	1 cut(s)	72
BisI	GCNGC	6 cut(s)	52, 73, 142, 157, 160, 266
BlsI	GCNGC	6 cut(s)	53, 74, 143, 158, 161, 267
Bme1390I	CCNGG	2 cut(s)	69, 97
Bme18I	GGWCC	1 cut(s)	99
BmeRI	GACNNNNNGTC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	2 cut(s)	69, 97
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	218
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
BsaJI	CCNNGG	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	213
BseBI	CCWGG	2 cut(s)	69, 97
BseDI	CCNNGG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	30
BseSI	GKGCMC	2 cut(s)	92, 170
BseXI	GCAGC	4 cut(s)	38, 143, 171, 252
BshFI	GGCC	1 cut(s)	223
BsiHKAI	GWGCWC	2 cut(s)	92, 170
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	223
Bsp1286I	GDGCHC	3 cut(s)	22, 92, 170
BspACI	CCGC	3 cut(s)	72, 141, 236
BspANI	GGCC	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	19
BspMAI	CTGCAG	1 cut(s)	161
BspMI	ACCTGC	2 cut(s)	41, 75
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	67
Bst2UI	CCWGG	2 cut(s)	69, 97
Bst4CI	ACNGT	2 cut(s)	115, 253
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstC8I	GCNNGC	3 cut(s)	77, 146, 246
BstHHI	GCGC	1 cut(s)	265
BstMAI	GTCTC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 81, 141, 165
BstNI	CCWGG	2 cut(s)	69, 97
BstSCI	CCNGG	2 cut(s)	67, 95
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	2 cut(s)	92, 170
BstV1I	GCAGC	4 cut(s)	38, 143, 171, 252
BsuRI	GGCC	1 cut(s)	223
BtsIMutI	CAGTG	2 cut(s)	196, 206
BveI	ACCTGC	2 cut(s)	41, 75
Cac8I	GCNNGC	3 cut(s)	77, 146, 246
CfoI	GCGC	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	99
CspCI	CAANNNNNGTGG	2 cut(s)	195, 230
CviAII	CATG	2 cut(s)	63, 260
CviJI	RGCY	7 cut(s)	5, 20, 51, 156, 162, 223, 278
CviKI_1	RGCY	7 cut(s)	5, 20, 51, 156, 162, 223, 278
DriI	GACNNNNNGTC	1 cut(s)	199
Eam1105I	GACNNNNNGTC	1 cut(s)	199
Eco147I	AGGCCT	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	99
EcoRII	CCWGG	2 cut(s)	67, 95
EcoT38I	GRGCYC	1 cut(s)	22
FaeI	CATG	2 cut(s)	66, 263
FaiI	YATR	2 cut(s)	64, 261
FatI	CATG	2 cut(s)	62, 259
Fnu4HI	GCNGC	6 cut(s)	52, 73, 142, 157, 160, 266
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	6 cut(s)	52, 73, 142, 157, 160, 266
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	6 cut(s)	52, 73, 142, 157, 160, 266
HaeIII	GGCC	1 cut(s)	223
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	2 cut(s)	66, 263
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	1 cut(s)	24
HphI	GGTGA	3 cut(s)	19, 195, 250
Hpy166II	GTNNAC	3 cut(s)	90, 118, 168
Hpy8I	GTNNAC	3 cut(s)	90, 118, 168
HpyCH4III	ACNGT	2 cut(s)	115, 253
HpyCH4V	TGCA	7 cut(s)	36, 84, 90, 159, 168, 230, 248
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 81, 141, 165
Hsp92II	CATG	2 cut(s)	66, 263
HspAI	GCGC	1 cut(s)	263
LmnI	GCTCC	2 cut(s)	17, 140
LpnPI	CCDG	9 cut(s)	46, 54, 70, 81, 82, 109, 120, 151, 194
Lsp1109I	GCAGC	4 cut(s)	38, 143, 171, 252
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	191, 201
MhlI	GDGCHC	3 cut(s)	22, 92, 170
MlyI	GAGTC	1 cut(s)	18
MnlI	CCTC	1 cut(s)	8
MspR9I	CCNGG	2 cut(s)	69, 97
MvaI	CCWGG	2 cut(s)	69, 97
MwoI	GCNNNNNNNGC	4 cut(s)	72, 81, 141, 165
NlaIII	CATG	2 cut(s)	66, 263
NlaIV	GGNNCC	1 cut(s)	19
NmuCI	GTSAC	2 cut(s)	191, 201
PaqCI	CACCTGC	2 cut(s)	41, 75
PceI	AGGCCT	1 cut(s)	223
PflMI	CCANNNNNTGG	1 cut(s)	68
PkrI	GCNGC	6 cut(s)	53, 74, 143, 158, 161, 267
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	67, 95
PspGI	CCWGG	2 cut(s)	67, 95
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	99
PstI	CTGCAG	1 cut(s)	161
SatI	GCNGC	6 cut(s)	52, 73, 142, 157, 160, 266
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	69, 97
SduI	GDGCHC	3 cut(s)	22, 92, 170
SetI	ASST	4 cut(s)	35, 47, 89, 280
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	99
SseBI	AGGCCT	1 cut(s)	223
SsiI	CCGC	3 cut(s)	72, 141, 236
SspMI	CTAG	1 cut(s)	177
StuI	AGGCCT	1 cut(s)	223
StyD4I	CCNGG	2 cut(s)	67, 95
TaaI	ACNGT	2 cut(s)	115, 253
TauI	GCSGC	2 cut(s)	75, 144
TscAI	CASTG	2 cut(s)	196, 213
TseFI	GTSAC	2 cut(s)	191, 201
TseI	GCWGC	4 cut(s)	51, 156, 159, 265
Tsp45I	GTSAC	2 cut(s)	191, 201
TspRI	CASTG	2 cut(s)	196, 213
Van91I	CCANNNNNTGG	1 cut(s)	68
VneI	GTGCAC	2 cut(s)	88, 166
VpaK11BI	GGWCC	1 cut(s)	99
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.