AT2G42000

Plant PEC family metallothionein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009194
Physical Location & Seq
Reverse (-)
17529243 .. 17530443
1201 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42000.2

Sequence Viewer

Length: 255 bp
ATGGCAGATACAGGCAAAGGAAGCTCTGTCGCTGGCTGCAACGATAGCTGTGGCTGCCCTTCTCCCTGTCCCGGTGGGAATTCCTGCAGGTGCAGGATGAGAGAAGCATCTGCTGGGGATCAAGGGCACATGGTGTGCCCGTGTGGGGAGCACTGCGGATGCAACCCCTGCAACTGCCCCAAGACCCAAACCCAAACCTCCGCCAAGGGCTGCACCTGTGGTGAGGGTTGCACATGCGCCTCTTGCGCCACTTAG

Protein Analysis

84

Amino Acids

8.29

Weight (kDa)

6.65

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallothio_PEC PF02068 48 - 120 1.9e-26 Plant PEC family metallothionein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 78
Acc36I ACCTGC 1 cut(s) 78
AciI CCGC 2 cut(s) 156, 201
AclWI GGATC 1 cut(s) 126
AcsI RAATTY 1 cut(s) 79
AdeI CACNNNGTG 1 cut(s) 133
AfiI CCNNNNNNNGG 2 cut(s) 71, 145
AluBI AGCT 2 cut(s) 24, 48
AluI AGCT 2 cut(s) 24, 48
Alw21I GWGCWC 1 cut(s) 153
AlwI GGATC 1 cut(s) 126
ApeKI GCWGC 3 cut(s) 36, 54, 210
ApoI RAATTY 1 cut(s) 79
AspLEI GCGC 2 cut(s) 239, 248
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 233
BaeGI GKGCMC 2 cut(s) 129, 140
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 3 cut(s) 23, 41, 197
BcnI CCSGG 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 78
BisI GCNGC 3 cut(s) 37, 55, 211
BlsI GCNGC 3 cut(s) 38, 56, 212
Bme1390I CCNGG 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 116, 149
BpuMI CCSGG 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 145
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 2 cut(s) 102, 164
BseLI CCNNNNNNNGG 2 cut(s) 71, 145
BseSI GKGCMC 2 cut(s) 129, 140
BseXI GCAGC 3 cut(s) 23, 41, 197
BseYI CCCAGC 1 cut(s) 113
BsgI GTGCAG 2 cut(s) 112, 196
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 71, 145
BsmFI GGGAC 1 cut(s) 54
Bsp1286I GDGCHC 3 cut(s) 129, 140, 153
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 2 cut(s) 156, 201
BspMAI CTGCAG 1 cut(s) 89
BspMI ACCTGC 1 cut(s) 78
BspPI GGATC 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 102, 164
BstHHI GCGC 2 cut(s) 239, 248
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 6 cut(s) 21, 45, 54, 168, 243, 245
BstNSI RCATGY 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 85
BstSLI GKGCMC 2 cut(s) 129, 140
BstV1I GCAGC 3 cut(s) 23, 41, 197
BtsCI GGATG 2 cut(s) 102, 164
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 151
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 2 cut(s) 239, 248
CviAII CATG 2 cut(s) 130, 234
CviJI RGCY 5 cut(s) 24, 36, 48, 54, 210
CviKI_1 RGCY 5 cut(s) 24, 36, 48, 54, 210
DdeI CTNAG 1 cut(s) 252
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
DraIII CACNNNGTG 1 cut(s) 133
EciI GGCGGA 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 2 cut(s) 133, 237
FaiI YATR 2 cut(s) 131, 235
FaqI GGGAC 1 cut(s) 54
FatI CATG 2 cut(s) 129, 233
Fnu4HI GCNGC 3 cut(s) 37, 55, 211
FokI GGATG 2 cut(s) 109, 171
Fsp4HI GCNGC 3 cut(s) 37, 55, 211
GlaI GCGC 2 cut(s) 238, 247
GluI GCNGC 3 cut(s) 37, 55, 211
GsaI CCCAGC 1 cut(s) 117
HapII CCGG 1 cut(s) 72
HhaI GCGC 2 cut(s) 239, 248
Hin1II CATG 2 cut(s) 133, 237
Hin6I GCGC 2 cut(s) 237, 246
HinP1I GCGC 2 cut(s) 237, 246
HpaII CCGG 1 cut(s) 72
HphI GGTGA 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 69
HpyCH4V TGCA 7 cut(s) 39, 87, 93, 162, 171, 213, 231
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 45, 54, 168, 243, 245
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 2 cut(s) 133, 237
HspAI GCGC 2 cut(s) 237, 246
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 9 cut(s) 18, 73, 79, 79, 85, 97, 99, 181, 229
Lsp1109I GCAGC 3 cut(s) 23, 41, 197
LweI GCATC 2 cut(s) 116, 149
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MhlI GDGCHC 3 cut(s) 129, 140, 153
MluCI AATT 1 cut(s) 79
MnlI CCTC 3 cut(s) 208, 217, 250
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 72
MwoI GCNNNNNNNGC 6 cut(s) 21, 45, 54, 168, 243, 245
NciI CCSGG 1 cut(s) 72
NdeII GATC 1 cut(s) 118
NlaIII CATG 2 cut(s) 133, 237
NspI RCATGY 1 cut(s) 237
PaqCI CACCTGC 1 cut(s) 78
PkrI GCNGC 3 cut(s) 38, 56, 212
PspFI CCCAGC 1 cut(s) 113
PstI CTGCAG 1 cut(s) 89
SatI GCNGC 3 cut(s) 37, 55, 211
Sau3AI GATC 1 cut(s) 118
SbfI CCTGCAGG 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 72
SdaI CCTGCAGG 1 cut(s) 89
SduI GDGCHC 3 cut(s) 129, 140, 153
SetI ASST 5 cut(s) 26, 50, 92, 200, 218
SfaNI GCATC 2 cut(s) 116, 149
SfcI CTRYAG 1 cut(s) 85
Sse8387I CCTGCAGG 1 cut(s) 89
Sse9I AATT 1 cut(s) 79
SsiI CCGC 2 cut(s) 156, 201
StyD4I CCNGG 1 cut(s) 70
StyI CCWWGG 1 cut(s) 204
TasI AATT 1 cut(s) 79
TscAI CASTG 1 cut(s) 158
TseI GCWGC 3 cut(s) 36, 54, 210
TspRI CASTG 1 cut(s) 158
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.