Rh6DG242700

EC protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0009194
Physical Location & Seq
Reverse (-)
42996281 .. 42997043
763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG242700.1

Sequence Viewer

Length: 258 bp
ATGGCTACTCTGGGAGGTGCCCGACTCACCACCTGCAACGATAGGTGTGGCTGCCCTACTCCATGCCCTGGCGGCGTGTCTTGCAGGTGCACAACCAGGACCGACCCTGCGACTGTGGACAACCACAAGAAATGCTCCTGCGGCGAGCATTGTGGCTGTAACCCGTGCACTTGTGCTAGAAAAGTTGCCACCACTGGGGTTGGCAAGGCCTACTGCAAGTGCGGTGATGCTTGCAACTGTGTCTCATGCGCTGCCTAA

Protein Analysis

85

Amino Acids

8.6

Weight (kDa)

8.47

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallothio_PEC PF02068 12 - 84 2.1e-24 Plant PEC family metallothionein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 41, 75
Acc36I ACCTGC 2 cut(s) 41, 75
AccB1I GGYRCC 1 cut(s) 17
AccB7I CCANNNNNTGG 1 cut(s) 68
AciI CCGC 3 cut(s) 72, 141, 222
AfiI CCNNNNNNNGG 2 cut(s) 68, 195
AjnI CCWGG 2 cut(s) 67, 95
Alw21I GWGCWC 2 cut(s) 92, 170
Alw26I GTCTC 1 cut(s) 247
Alw44I GTGCAC 2 cut(s) 88, 166
AoxI GGCC 1 cut(s) 207
ApaLI GTGCAC 2 cut(s) 88, 166
ApeKI GCWGC 2 cut(s) 51, 251
AspLEI GCGC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 2 cut(s) 19, 236
AvaII GGWCC 1 cut(s) 99
BaeGI GKGCMC 3 cut(s) 22, 92, 170
BanI GGYRCC 1 cut(s) 17
Bbv12I GWGCWC 2 cut(s) 92, 170
BbvI GCAGC 2 cut(s) 38, 238
BciT130I CCWGG 2 cut(s) 69, 97
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 1 cut(s) 177
BfuAI ACCTGC 2 cut(s) 41, 75
BglI GCCNNNNNGGC 1 cut(s) 72
BisI GCNGC 4 cut(s) 52, 73, 142, 252
BlsI GCNGC 4 cut(s) 53, 74, 143, 253
Bme1390I CCNGG 2 cut(s) 69, 97
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 2 cut(s) 69, 97
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 217
BmuI ACTGGG 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 67
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 195
Bse1I ACTGG 1 cut(s) 199
BseBI CCWGG 2 cut(s) 69, 97
BseDI CCNNGG 1 cut(s) 67
BseLI CCNNNNNNNGG 2 cut(s) 68, 195
BseNI ACTGG 1 cut(s) 199
BseSI GKGCMC 3 cut(s) 22, 92, 170
BseXI GCAGC 2 cut(s) 38, 238
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 17
BsiHKAI GWGCWC 2 cut(s) 92, 170
BslI CCNNNNNNNGG 2 cut(s) 68, 195
BsmAI GTCTC 1 cut(s) 247
BsnI GGCC 1 cut(s) 209
Bsp1286I GDGCHC 3 cut(s) 22, 92, 170
BspACI CCGC 3 cut(s) 72, 141, 222
BspANI GGCC 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 19
BspMI ACCTGC 2 cut(s) 41, 75
BspT107I GGYRCC 1 cut(s) 17
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 67
Bst2UI CCWGG 2 cut(s) 69, 97
Bst4CI ACNGT 2 cut(s) 115, 239
BstC8I GCNNGC 2 cut(s) 146, 232
BstHHI GCGC 1 cut(s) 251
BstMAI GTCTC 1 cut(s) 247
BstMWI GCNNNNNNNGC 3 cut(s) 72, 81, 141
BstNI CCWGG 2 cut(s) 69, 97
BstSCI CCNGG 2 cut(s) 67, 95
BstSLI GKGCMC 3 cut(s) 22, 92, 170
BstV1I GCAGC 2 cut(s) 38, 238
BsuRI GGCC 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 192
BveI ACCTGC 2 cut(s) 41, 75
Cac8I GCNNGC 2 cut(s) 146, 232
CfoI GCGC 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 99
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 2 cut(s) 63, 246
CviJI RGCY 4 cut(s) 5, 51, 156, 209
CviKI_1 RGCY 4 cut(s) 5, 51, 156, 209
Eco147I AGGCCT 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 99
EcoRII CCWGG 2 cut(s) 67, 95
FaeI CATG 2 cut(s) 66, 249
FaiI YATR 2 cut(s) 64, 247
FatI CATG 2 cut(s) 62, 245
Fnu4HI GCNGC 4 cut(s) 52, 73, 142, 252
Fsp4HI GCNGC 4 cut(s) 52, 73, 142, 252
FspBI CTAG 1 cut(s) 177
GlaI GCGC 1 cut(s) 250
GluI GCNGC 4 cut(s) 52, 73, 142, 252
HaeIII GGCC 1 cut(s) 209
HhaI GCGC 1 cut(s) 251
Hin1II CATG 2 cut(s) 66, 249
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HinfI GANTC 1 cut(s) 24
HphI GGTGA 2 cut(s) 19, 236
Hpy166II GTNNAC 3 cut(s) 90, 118, 168
Hpy8I GTNNAC 3 cut(s) 90, 118, 168
HpyCH4III ACNGT 2 cut(s) 115, 239
HpyCH4V TGCA 6 cut(s) 36, 84, 90, 168, 216, 234
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 81, 141
Hsp92II CATG 2 cut(s) 66, 249
HspAI GCGC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 9 cut(s) 46, 54, 70, 81, 82, 109, 120, 151, 180
Lsp1109I GCAGC 2 cut(s) 38, 238
LweI GCATC 1 cut(s) 217
MaeI CTAG 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 158
MhlI GDGCHC 3 cut(s) 22, 92, 170
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 1 cut(s) 8
MspR9I CCNGG 2 cut(s) 69, 97
MvaI CCWGG 2 cut(s) 69, 97
MwoI GCNNNNNNNGC 3 cut(s) 72, 81, 141
NlaIII CATG 2 cut(s) 66, 249
NlaIV GGNNCC 1 cut(s) 19
PaqCI CACCTGC 2 cut(s) 41, 75
PceI AGGCCT 1 cut(s) 209
PflMI CCANNNNNTGG 1 cut(s) 68
PkrI GCNGC 4 cut(s) 53, 74, 143, 253
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 67, 95
PspGI CCWGG 2 cut(s) 67, 95
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 99
SatI GCNGC 4 cut(s) 52, 73, 142, 252
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 2 cut(s) 69, 97
SduI GDGCHC 3 cut(s) 22, 92, 170
SetI ASST 4 cut(s) 19, 35, 47, 89
SfaNI GCATC 1 cut(s) 217
SinI GGWCC 1 cut(s) 99
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 3 cut(s) 72, 141, 222
SspMI CTAG 1 cut(s) 177
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 67, 95
TaaI ACNGT 2 cut(s) 115, 239
TaqII GACCGA 1 cut(s) 116
TauI GCSGC 2 cut(s) 75, 144
TscAI CASTG 1 cut(s) 199
TseI GCWGC 2 cut(s) 51, 251
TspRI CASTG 1 cut(s) 199
Van91I CCANNNNNTGG 1 cut(s) 68
VneI GTGCAC 2 cut(s) 88, 166
VpaK11BI GGWCC 1 cut(s) 99
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.