Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009194

Physical Location & Seq

Genomic Coordinates Reverse (-)

18021436 .. 18022357

Gene Structure 922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G179200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGCGGACACAACCACAGGCGGAGGTATCAAAGCCAGCTGCAACGATAGTTGCGGCTGCCCAAATCCCTGTCCCGGTGGGGTCACTTGCAGGTGTACCAACACCGCCGAGGCCACGAGCGGGGGCGGGGATCACATGACGTGCTCGTGCGGAGAGCACTGTGGCTGCAACCCGTGCACTTGCGCTAAGAGCGTCGTCAGCACCAAGACCGGGAAGGCCTACTGCAAGTGCGGCGAGGGTTGCGCATGTGTGTCATGCGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0016020 GO:0030001 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0072511

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallothio_PEC

Protein Analysis

89

Amino Acids

8.52

Weight (kDa)

6.64

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23240 AT2G23240 AT2G42000 AT2G42000
fragaria_vesca	FvH4_2g16730
malus_domestica	MD05G1135300.v1.1
prunus_persica	Prupe.8G179200_v2.0.a1
pyrus_communis	pycom05g13190
rosa_chinensis	RchiOBHm_Chr6g0280851
rosa_multiflora	Rmu_sc0023262.1_g000005 Rmu_ssc0000024.1_g000007
rosa_roxburghii	Rroxscaffold_7G00187560
rosa_rugosa	Rorug06G0135100
rosa_samantha	Rh6AG248400 Rh6AG248500 Rh6BG250000 Rh6CG251100 Rh6CG251200 Rh6DG242700 Rh6DG242800
rosa_wichuraiana	Rw6G021470 Rw6G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	81
Acc16I	TGCGCA	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	81
AccBSI	CCGCTC	1 cut(s)	120
AciI	CCGC	8 cut(s)	5, 21, 54, 105, 120, 126, 150, 231
AclWI	GGATC	1 cut(s)	138
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	3 cut(s)	74, 120, 210
AjiI	CACGTC	1 cut(s)	141
AluBI	AGCT	1 cut(s)	39
AluI	AGCT	1 cut(s)	39
Alw21I	GWGCWC	3 cut(s)	146, 159, 179
Alw44I	GTGCAC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	138
AoxI	GGCC	2 cut(s)	111, 216
ApaLI	GTGCAC	1 cut(s)	175
ApeKI	GCWGC	4 cut(s)	39, 57, 165, 260
AspLEI	GCGC	3 cut(s)	185, 245, 260
AsuC2I	CCSGG	2 cut(s)	75, 211
BaeGI	GKGCMC	1 cut(s)	179
BauI	CACGAG	2 cut(s)	115, 145
Bbv12I	GWGCWC	3 cut(s)	146, 159, 179
BbvI	GCAGC	4 cut(s)	26, 44, 152, 247
BcnI	CCSGG	2 cut(s)	75, 211
BfuAI	ACCTGC	1 cut(s)	81
BisI	GCNGC	6 cut(s)	40, 55, 58, 166, 232, 261
BlsI	GCNGC	6 cut(s)	41, 56, 59, 167, 233, 262
Bme1390I	CCNGG	2 cut(s)	75, 211
BmgBI	CACGTC	1 cut(s)	141
BmrFI	CCNGG	2 cut(s)	75, 211
BpuMI	CCSGG	2 cut(s)	75, 211
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 120, 210
BseDI	CCNNGG	1 cut(s)	108
BseLI	CCNNNNNNNGG	3 cut(s)	74, 120, 210
BseSI	GKGCMC	1 cut(s)	179
BseXI	GCAGC	4 cut(s)	26, 44, 152, 247
BshFI	GGCC	2 cut(s)	113, 218
BsiHKAI	GWGCWC	3 cut(s)	146, 159, 179
BsiSI	CCGG	2 cut(s)	75, 210
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	3 cut(s)	74, 120, 210
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	113, 218
Bsp1286I	GDGCHC	3 cut(s)	146, 159, 179
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	8 cut(s)	5, 21, 54, 105, 120, 126, 150, 231
BspANI	GGCC	2 cut(s)	113, 218
BspMI	ACCTGC	1 cut(s)	81
BspPI	GGATC	1 cut(s)	138
BsrBI	CCGCTC	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	130
BssSI	CACGAG	2 cut(s)	115, 145
Bst2BI	CACGAG	2 cut(s)	115, 145
Bst4CI	ACNGT	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	186
BstHHI	GCGC	3 cut(s)	185, 245, 260
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	5 cut(s)	174, 189, 198, 231, 240
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	73, 209
BstSLI	GKGCMC	1 cut(s)	179
BstV1I	GCAGC	4 cut(s)	26, 44, 152, 247
BsuRI	GGCC	2 cut(s)	113, 218
BtrI	CACGTC	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	157
BveI	ACCTGC	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	3 cut(s)	185, 245, 260
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	3 cut(s)	136, 246, 255
CviJI	RGCY	6 cut(s)	35, 39, 57, 113, 165, 218
CviKI_1	RGCY	6 cut(s)	35, 39, 57, 113, 165, 218
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EciI	GGCGGA	2 cut(s)	20, 36
Eco147I	AGGCCT	1 cut(s)	218
FaeI	CATG	3 cut(s)	139, 249, 258
FaiI	YATR	3 cut(s)	137, 247, 256
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	3 cut(s)	135, 245, 254
FauI	CCCGC	2 cut(s)	113, 119
Fnu4HI	GCNGC	6 cut(s)	40, 55, 58, 166, 232, 261
Fsp4HI	GCNGC	6 cut(s)	40, 55, 58, 166, 232, 261
FspI	TGCGCA	1 cut(s)	244
GlaI	GCGC	3 cut(s)	184, 244, 259
GluI	GCNGC	6 cut(s)	40, 55, 58, 166, 232, 261
HaeIII	GGCC	2 cut(s)	113, 218
HapII	CCGG	2 cut(s)	75, 210
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	3 cut(s)	185, 245, 260
Hin1II	CATG	3 cut(s)	139, 249, 258
Hin6I	GCGC	3 cut(s)	183, 243, 258
HinP1I	GCGC	3 cut(s)	183, 243, 258
HpaII	CCGG	2 cut(s)	75, 210
Hpy166II	GTNNAC	2 cut(s)	96, 177
Hpy8I	GTNNAC	2 cut(s)	96, 177
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	5 cut(s)	42, 90, 168, 177, 225
HpyF10VI	GCNNNNNNNGC	5 cut(s)	174, 189, 198, 231, 240
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	3 cut(s)	139, 249, 258
HspAI	GCGC	3 cut(s)	183, 243, 258
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	6 cut(s)	3, 49, 76, 82, 88, 223
Lsp1109I	GCAGC	4 cut(s)	26, 44, 152, 247
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	132
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	1 cut(s)	130
MhlI	GDGCHC	3 cut(s)	146, 159, 179
MnlI	CCTC	3 cut(s)	17, 103, 229
MseI	TTAA	1 cut(s)	265
MspA1I	CMGCKG	1 cut(s)	39
MspI	CCGG	2 cut(s)	75, 210
MspR9I	CCNGG	2 cut(s)	75, 211
MwoI	GCNNNNNNNGC	5 cut(s)	174, 189, 198, 231, 240
NciI	CCSGG	2 cut(s)	75, 211
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	3 cut(s)	139, 249, 258
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	82
NsbI	TGCGCA	1 cut(s)	244
NspI	RCATGY	1 cut(s)	249
PaqCI	CACCTGC	1 cut(s)	81
PceI	AGGCCT	1 cut(s)	218
PkrI	GCNGC	6 cut(s)	41, 56, 59, 167, 233, 262
PvuII	CAGCTG	1 cut(s)	39
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	265
SatI	GCNGC	6 cut(s)	40, 55, 58, 166, 232, 261
Sau3AI	GATC	1 cut(s)	130
ScrFI	CCNGG	2 cut(s)	75, 211
SduI	GDGCHC	3 cut(s)	146, 159, 179
SetI	ASST	4 cut(s)	28, 41, 95, 143
SseBI	AGGCCT	1 cut(s)	218
SsiI	CCGC	8 cut(s)	5, 21, 54, 105, 120, 126, 150, 231
StuI	AGGCCT	1 cut(s)	218
StyD4I	CCNGG	2 cut(s)	73, 209
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	1 cut(s)	143
TauI	GCSGC	2 cut(s)	57, 234
Tru1I	TTAA	1 cut(s)	265
Tru9I	TTAA	1 cut(s)	265
TscAI	CASTG	1 cut(s)	164
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	4 cut(s)	39, 57, 165, 260
Tsp45I	GTSAC	1 cut(s)	82
TspRI	CASTG	1 cut(s)	164
VneI	GTGCAC	1 cut(s)	175
XceI	RCATGY	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.