AT2G24400

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006199
Physical Location & Seq
Reverse (-)
10376956 .. 10378645
1690 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24400.1

Sequence Viewer

Length: 537 bp
ATGGAAGCCAAGAAGTCAAACAAGATCAGAGAGATCGTTAAGCTTCAACAGCTTCTCAAGAAATGGCGAAAACAAGCAATTGCATCAAAAGCAGCCAACAACAACAACGAAGACAACAATAGCAGTGGCGGGGGAAGCAAGAGCATCAAGTTTCTGAAGAGGACACTGTCATTTACAGATGTAACAGCTGTGCCTAAAGGGTATCTAGCTGTTTCGGTCGGGTTAGAGAAGAAGAGGTACACAATACCAACCGAGTACCTCAGCCATCAAGCTTTCTATGTTCTTCTGCGTGAGGCAGAAGAAGAGTTCGGGTTTCAACAAGCCGGTGTCTTGAGGATTCCTTGTGAAGTTTCTGTTTTTGAGAGCATATTGAAGATAATGGAGGAGAAGAACGAAGGGTACCTGGTGACGCCAATAACAGCTAAGCAGGAATGTAAGTTCAATGCAGCAGCAGATGATAAGACGAGTTACCAGCATCCATCAGACTGTCCTAAGACTCCTTCACACCAACCTCACAACAGCCCAATGTGCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

178

Amino Acids

20.05

Weight (kDa)

9.2

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 14 - 126 2.7e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 399
AccB1I GGYRCC 1 cut(s) 399
AciI CCGC 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 410
AfaI GTAC 3 cut(s) 239, 257, 401
AgsI TTSAA 4 cut(s) 47, 317, 373, 442
AjnI CCWGG 1 cut(s) 402
AloI GAACNNNNNNTCC 2 cut(s) 422, 454
AluBI AGCT 6 cut(s) 43, 52, 188, 209, 272, 422
AluI AGCT 6 cut(s) 43, 52, 188, 209, 272, 422
ApeKI GCWGC 3 cut(s) 92, 446, 449
Asp718I GGTACC 1 cut(s) 399
AsuHPI GGTGA 1 cut(s) 418
BanI GGYRCC 1 cut(s) 399
BarI GAAGNNNNNNTAC 2 cut(s) 221, 253
BbsI GAAGAC 1 cut(s) 117
BbvCI CCTCAGC 1 cut(s) 260
BbvI GCAGC 3 cut(s) 104, 458, 461
BccI CCATC 2 cut(s) 273, 487
BciT130I CCWGG 1 cut(s) 404
BfaI CTAG 1 cut(s) 206
BisI GCNGC 3 cut(s) 93, 447, 450
BlpI GCTNAGC 1 cut(s) 423
BlsI GCNGC 3 cut(s) 94, 448, 451
Bme1390I CCNGG 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 401
BmrFI CCNGG 1 cut(s) 404
BmsI GCATC 3 cut(s) 92, 153, 484
BpiI GAAGAC 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 260
Bpu1102I GCTNAGC 1 cut(s) 423
BpuEI CTTGAG 2 cut(s) 41, 352
BsaHI GRCGYC 1 cut(s) 410
Bse118I RCCGGY 1 cut(s) 323
BseBI CCWGG 1 cut(s) 404
BseGI GGATG 1 cut(s) 475
BseMII CTCAG 1 cut(s) 274
BseRI GAGGAG 1 cut(s) 398
BseXI GCAGC 3 cut(s) 104, 458, 461
Bsh1285I CGRYCG 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 399
BsiEI CGRYCG 1 cut(s) 219
BsiSI CCGG 1 cut(s) 324
Bsp143I GATC 2 cut(s) 24, 33
Bsp1720I GCTNAGC 1 cut(s) 423
BspACI CCGC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 401
BspT107I GGYRCC 1 cut(s) 399
BsrFI RCCGGY 1 cut(s) 323
BssAI RCCGGY 1 cut(s) 323
BssMI GATC 2 cut(s) 24, 33
BssNI GRCGYC 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 404
Bst4CI ACNGT 2 cut(s) 168, 488
Bst6I CTCTTC 3 cut(s) 152, 227, 297
BstACI GRCGYC 1 cut(s) 410
BstDEI CTNAG 3 cut(s) 260, 423, 492
BstF5I GGATG 1 cut(s) 475
BstKTI GATC 2 cut(s) 27, 36
BstMBI GATC 2 cut(s) 24, 33
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 4 cut(s) 49, 89, 135, 528
BstNI CCWGG 1 cut(s) 404
BstSCI CCNGG 1 cut(s) 402
BstV1I GCAGC 3 cut(s) 104, 458, 461
BstV2I GAAGAC 1 cut(s) 117
BtsCI GGATG 1 cut(s) 475
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 2 cut(s) 130, 164
Cfr10I RCCGGY 1 cut(s) 323
CseI GACGC 1 cut(s) 418
CsiI ACCWGGT 1 cut(s) 402
Csp6I GTAC 3 cut(s) 238, 256, 400
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviQI GTAC 3 cut(s) 238, 256, 400
DdeI CTNAG 3 cut(s) 260, 423, 492
DpnI GATC 2 cut(s) 26, 35
DpnII GATC 2 cut(s) 24, 33
Eam1104I CTCTTC 3 cut(s) 152, 227, 297
EarI CTCTTC 3 cut(s) 152, 227, 297
Eco57I CTGAAG 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 402
FaiI YATR 2 cut(s) 279, 368
FauI CCCGC 1 cut(s) 122
Fnu4HI GCNGC 3 cut(s) 93, 447, 450
FokI GGATG 1 cut(s) 462
Fsp4HI GCNGC 3 cut(s) 93, 447, 450
FspBI CTAG 1 cut(s) 206
GluI GCNGC 3 cut(s) 93, 447, 450
HapII CCGG 1 cut(s) 324
HgaI GACGC 1 cut(s) 418
Hin1I GRCGYC 1 cut(s) 410
HindIII AAGCTT 2 cut(s) 41, 270
HinfI GANTC 2 cut(s) 337, 496
HpaII CCGG 1 cut(s) 324
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 3 cut(s) 29, 156, 484
Hpy188III TCNNGA 2 cut(s) 58, 331
Hpy8I GTNNAC 1 cut(s) 240
HpyAV CCTTC 2 cut(s) 389, 510
HpyCH4III ACNGT 2 cut(s) 168, 488
HpyCH4V TGCA 3 cut(s) 83, 446, 531
HpyF10VI GCNNNNNNNGC 4 cut(s) 49, 89, 135, 528
HpyF3I CTNAG 3 cut(s) 260, 423, 492
Hsp92I GRCGYC 1 cut(s) 410
KpnI GGTACC 1 cut(s) 403
Kzo9I GATC 2 cut(s) 24, 33
LpnPI CCDG 5 cut(s) 337, 389, 413, 416, 485
Lsp1109I GCAGC 3 cut(s) 104, 458, 461
LweI GCATC 3 cut(s) 92, 153, 484
MabI ACCWGGT 1 cut(s) 402
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 3 cut(s) 181, 406, 467
MalI GATC 2 cut(s) 26, 35
MboI GATC 2 cut(s) 24, 33
MboII GAAGA 9 cut(s) 122, 169, 241, 244, 275, 311, 314, 385, 400
MfeI CAATTG 1 cut(s) 78
MluCI AATT 1 cut(s) 78
MlyI GAGTC 1 cut(s) 490
MnlI CCTC 7 cut(s) 153, 228, 269, 286, 327, 376, 522
MseI TTAA 1 cut(s) 39
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 1 cut(s) 404
MunI CAATTG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 404
MwoI GCNNNNNNNGC 4 cut(s) 49, 89, 135, 528
NdeII GATC 2 cut(s) 24, 33
NlaIV GGNNCC 1 cut(s) 401
NmuCI GTSAC 1 cut(s) 406
PfeI GAWTC 1 cut(s) 337
PflFI GACNNNGTC 1 cut(s) 166
PkrI GCNGC 3 cut(s) 94, 448, 451
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
Psp6I CCWGG 1 cut(s) 402
PspGI CCWGG 1 cut(s) 402
PspN4I GGNNCC 1 cut(s) 401
PsrI GAACNNNNNNTAC 2 cut(s) 383, 415
PsyI GACNNNGTC 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 3 cut(s) 239, 257, 401
RsaNI GTAC 3 cut(s) 238, 256, 400
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 3 cut(s) 93, 447, 450
Sau3AI GATC 2 cut(s) 24, 33
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 1 cut(s) 404
SexAI ACCWGGT 1 cut(s) 402
SfaNI GCATC 3 cut(s) 92, 153, 484
SmlI CTYRAG 2 cut(s) 56, 331
SmoI CTYRAG 2 cut(s) 56, 331
Sse9I AATT 1 cut(s) 78
SsiI CCGC 1 cut(s) 129
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 402
TaaI ACNGT 2 cut(s) 168, 488
TaqII GACCGA 1 cut(s) 205
TasI AATT 1 cut(s) 78
TfiI GAWTC 1 cut(s) 337
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 2 cut(s) 130, 171
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 3 cut(s) 92, 446, 449
Tsp45I GTSAC 1 cut(s) 406
TspRI CASTG 2 cut(s) 130, 171
Tth111I GACNNNGTC 1 cut(s) 166
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.