Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006199

Physical Location & Seq

Genomic Coordinates Forward (+)

38251559 .. 38252129

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G455700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAACACCACCATGGATTCAAAGAAATCTAACAAGATCAGAGACATTGTCAGGCTTCAACAGATTCTCAAGAAGTGGAGAAAGATTGCTAACTCCTCATCATCATCATCAAAAGCAATCTCCAACAGCAACCACAACATGAGCAGCAGCAGCAGCAAGAGCATCAAGTTTCTGAAGAGGACACTTTCTCTGTCGGACAAAACCACCACCTCCTCATTTGAGGCCTCAAGCAATGCTGCTGTCCCCAAAGGCTATCTTGCTGTTTGTGTTGGGGAGGAGCTCAAGAGATTTGTCATCCCAACTGACTACTTGGGTCGTCCTGCTTTTCACATTCTGCTGAGAGAAGCTGAGGAGGAGTTTGGGTTTCACCAGACTGGTGTTCTGAGGATTCCATGTGAGGTTTCTGTGTTTGAAGATATTTTGAAGATGGTGGAGGAAGACAGGGACACATTGCTCTTCAATCTGCAAGAATGCAGGTTTAACAAAGATGATATGATGGGGTGCTGCTCATCATCAGAAGGCCAGCCTAACTTTTCTCACCAGCCAGAAAGCCCAATGTGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

189

Amino Acids

21.2

Weight (kDa)

8.52

Isoelectric Point (pI)

59.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24400 AT4G31320
fragaria_vesca	FvH4_2g36430 FvH4_6g36860
malus_domestica	MD08G1124000.v1.1 MD09G1166200.v1.1 MD15G1102700.v1.1 MD17G1161400.v1.1
prunus_persica	Prupe.1G455700_v2.0.a1 Prupe.3G023900_v2.0.a1
pyrus_communis	pycom08g10280
rosa_chinensis	RchiOBHm_Chr2g0149251 RchiOBHm_Chr6g0305471
rosa_laevigata	RLG00000010889 RLG00000020387
rosa_multiflora	Rmu_sc0001615.1_g000010 Rmu_sc0007817.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098270 Rroxscaffold_7G00162790
rosa_rugosa	Rorug02G0410000 Rorug06G0340400
rosa_samantha	Rh2AG470800 Rh2BG483000 Rh2CG456700 Rh2DG492000
rosa_wichuraiana	Rw2G038290 Rw6G039430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	465
AcuI	CTGAAG	1 cut(s)	194
AgsI	TTSAA	5 cut(s)	21, 59, 413, 424, 460
AluBI	AGCT	2 cut(s)	280, 347
AluI	AGCT	2 cut(s)	280, 347
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	1 cut(s)	36
AoxI	GGCC	2 cut(s)	222, 520
ApeKI	GCWGC	6 cut(s)	144, 147, 150, 153, 236, 504
AsuHPI	GGTGA	2 cut(s)	359, 530
BanII	GRGCYC	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	282
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	6 cut(s)	156, 159, 162, 165, 223, 491
BccI	CCATC	2 cut(s)	421, 490
BcoDI	GTCTC	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	465
BisI	GCNGC	6 cut(s)	145, 148, 151, 154, 237, 505
BlsI	GCNGC	6 cut(s)	146, 149, 152, 155, 238, 506
BmsI	GCATC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	3 cut(s)	53, 211, 266
BsaJI	CCNNGG	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	2 cut(s)	238, 449
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	294
BseMI	GCAATG	2 cut(s)	238, 449
BseMII	CTCAG	3 cut(s)	329, 339, 374
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	5 cut(s)	85, 202, 290, 365, 368
BseXI	GCAGC	6 cut(s)	156, 159, 162, 165, 223, 491
BshFI	GGCC	2 cut(s)	224, 522
BsiHKAI	GWGCWC	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	227, 458
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	2 cut(s)	227, 458
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	2 cut(s)	224, 522
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	36
Bsp19I	CCATGG	1 cut(s)	12
BspANI	GGCC	2 cut(s)	224, 522
BspCNI	CTCAG	3 cut(s)	330, 340, 375
BspMI	ACCTGC	1 cut(s)	465
BspQI	GCTCTTC	1 cut(s)	461
BsrDI	GCAATG	2 cut(s)	238, 449
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	12
Bst6I	CTCTTC	2 cut(s)	170, 461
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	3 cut(s)	338, 348, 383
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	294
BstKTI	GATC	1 cut(s)	39
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	4 cut(s)	150, 153, 159, 558
BstV1I	GCAGC	6 cut(s)	156, 159, 162, 165, 223, 491
BstV2I	GAAGAC	1 cut(s)	444
BsuRI	GGCC	2 cut(s)	224, 522
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	294
BveI	ACCTGC	1 cut(s)	465
Cac8I	GCNNGC	1 cut(s)	524
CviAII	CATG	3 cut(s)	13, 139, 393
CviJI	RGCY	9 cut(s)	55, 224, 252, 280, 347, 522, 526, 544, 552
CviKI_1	RGCY	9 cut(s)	55, 224, 252, 280, 347, 522, 526, 544, 552
DdeI	CTNAG	3 cut(s)	338, 348, 383
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	170, 461
EarI	CTCTTC	2 cut(s)	170, 461
Ecl136II	GAGCTC	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	12
Eco147I	AGGCCT	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	282
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	3 cut(s)	16, 142, 396
FaiI	YATR	4 cut(s)	14, 140, 394, 494
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FaqI	GGGAC	2 cut(s)	227, 458
FatI	CATG	3 cut(s)	12, 138, 392
Fnu4HI	GCNGC	6 cut(s)	145, 148, 151, 154, 237, 505
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	6 cut(s)	145, 148, 151, 154, 237, 505
GluI	GCNGC	6 cut(s)	145, 148, 151, 154, 237, 505
HaeIII	GGCC	2 cut(s)	224, 522
Hin1II	CATG	3 cut(s)	16, 142, 396
HinfI	GANTC	3 cut(s)	17, 64, 388
HphI	GGTGA	2 cut(s)	359, 530
Hpy188I	TCNGA	5 cut(s)	41, 174, 196, 384, 517
Hpy188III	TCNNGA	2 cut(s)	70, 283
HpyAV	CCTTC	1 cut(s)	512
HpyCH4V	TGCA	3 cut(s)	466, 474, 561
HpyF10VI	GCNNNNNNNGC	4 cut(s)	150, 153, 159, 558
HpyF3I	CTNAG	3 cut(s)	338, 348, 383
Hsp92II	CATG	3 cut(s)	16, 142, 396
Kzo9I	GATC	1 cut(s)	36
LguI	GCTCTTC	1 cut(s)	461
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	9 cut(s)	37, 333, 360, 383, 427, 460, 536, 554, 558
Lsp1109I	GCAGC	6 cut(s)	156, 159, 162, 165, 223, 491
LweI	GCATC	1 cut(s)	171
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	5 cut(s)	187, 425, 436, 448, 449
MhlI	GDGCHC	1 cut(s)	282
MmeI	TCCRAC	2 cut(s)	147, 174
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	476
MwoI	GCNNNNNNNGC	4 cut(s)	150, 153, 159, 558
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	3 cut(s)	16, 142, 396
PceI	AGGCCT	1 cut(s)	224
PciSI	GCTCTTC	1 cut(s)	461
PctI	GAATGC	1 cut(s)	476
PfeI	GAWTC	3 cut(s)	17, 64, 388
PflFI	GACNNNGTC	1 cut(s)	47
PkrI	GCNGC	6 cut(s)	146, 149, 152, 155, 238, 506
Psp124BI	GAGCTC	1 cut(s)	282
PsyI	GACNNNGTC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	11
SacI	GAGCTC	1 cut(s)	282
SapI	GCTCTTC	1 cut(s)	461
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	6 cut(s)	145, 148, 151, 154, 237, 505
Sau3AI	GATC	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	5 cut(s)	212, 282, 349, 402, 479
SfaNI	GCATC	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	3 cut(s)	68, 226, 281
SmoI	CTYRAG	3 cut(s)	68, 226, 281
SseBI	AGGCCT	1 cut(s)	224
SstI	GAGCTC	1 cut(s)	282
StuI	AGGCCT	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	12
TfiI	GAWTC	3 cut(s)	17, 64, 388
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TseI	GCWGC	6 cut(s)	144, 147, 150, 153, 236, 504
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.