FvH4_2g36430

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006199
Physical Location & Seq
Forward (+)
26682019 .. 26682516
498 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36430.t1

Sequence Viewer

Length: 498 bp
ATGAACAGCACCACCATGGATTCAAAGAAGTCTAACAAGATCAGGGAGATTGTGAGGCTTCAGCAGATTCTCAAGAAGTGGAGAAAGATCGCTAACTCGCCGAAAGCGAACTCCATTACCACCAGTAGCAGCAACAAGAGCATCAAGTTTCTGAAAAGAACACTTTCTCTATCAGACAAAACCGGCAGTACCTGTGATGCTTCTAACAATGCTCATGTCCCCAAAGGGTACCTTGCTGTTTGTGTTGGAGACGAGCTCAAGAGATTCGTCATTCCAACAGATTATCTTGGCCGTCCTGCTTTTCAGTTTCTGCTGAGAGAAGCTGAGGAGGAGTTCGGGTTTCAGCAGACTGGCGTTCTGAGGATTCCGTGTGAGGTTTCTGTATTTGAAGAGCTTTTGAAGATGGTGGAGGAAGATAGGGATACATTCTTCATGCAAGGATGCTATTCAGAAAGCCAGCTCAACTTTTACCACCCAGAAAGCCCAATGTGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

166

Amino Acids

18.87

Weight (kDa)

8.8

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 19 - 136 7e-29 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 228
AccB1I GGYRCC 1 cut(s) 228
AcoI YGGCCR 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 44
AfaI GTAC 2 cut(s) 190, 230
AgsI TTSAA 3 cut(s) 24, 389, 400
AluBI AGCT 4 cut(s) 256, 323, 394, 460
AluI AGCT 4 cut(s) 256, 323, 394, 460
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 1 cut(s) 243
AlwNI CAGNNNCTG 2 cut(s) 192, 310
AoxI GGCC 1 cut(s) 289
ApeKI GCWGC 1 cut(s) 129
Asp700I GAANNNNTTC 1 cut(s) 163
Asp718I GGTACC 1 cut(s) 228
BanI GGYRCC 1 cut(s) 228
BanII GRGCYC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 258
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 141
BccI CCATC 1 cut(s) 397
BceAI ACGGC 1 cut(s) 276
BciVI GTATCC 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 243
BfuI GTATCC 1 cut(s) 415
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 230
BmsI GCATC 3 cut(s) 150, 187, 431
BplI GAGNNNNNCTC 2 cut(s) 240, 272
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 2 cut(s) 56, 242
BsaJI CCNNGG 1 cut(s) 15
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 2 cut(s) 123, 355
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 446
BseMII CTCAG 3 cut(s) 305, 315, 350
BseNI ACTGG 2 cut(s) 123, 355
BseRI GAGGAG 2 cut(s) 341, 344
BseXI GCAGC 1 cut(s) 141
BshFI GGCC 1 cut(s) 291
BshNI GGYRCC 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 243
BsmBI CGTCTC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 1 cut(s) 291
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 2 cut(s) 39, 87
Bsp19I CCATGG 1 cut(s) 15
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 3 cut(s) 306, 316, 351
BspLI GGNNCC 1 cut(s) 230
BspQI GCTCTTC 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 228
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 2 cut(s) 123, 355
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 2 cut(s) 39, 87
BssT1I CCWWGG 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 458
BstDEI CTNAG 3 cut(s) 314, 324, 359
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 446
BstKTI GATC 2 cut(s) 42, 90
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 2 cut(s) 39, 87
BstMWI GCNNNNNNNGC 2 cut(s) 138, 489
BstV1I GCAGC 1 cut(s) 141
BsuI GTATCC 1 cut(s) 415
BsuRI GGCC 1 cut(s) 291
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 1 cut(s) 446
Cac8I GCNNGC 1 cut(s) 458
CaiI CAGNNNCTG 2 cut(s) 192, 310
Cfr10I RCCGGY 1 cut(s) 182
Csp6I GTAC 2 cut(s) 189, 229
CviAII CATG 3 cut(s) 16, 215, 433
CviJI RGCY 8 cut(s) 58, 256, 291, 323, 394, 456, 460, 483
CviKI_1 RGCY 8 cut(s) 58, 256, 291, 323, 394, 456, 460, 483
CviQI GTAC 2 cut(s) 189, 229
DdeI CTNAG 3 cut(s) 314, 324, 359
DpnI GATC 2 cut(s) 41, 89
DpnII GATC 2 cut(s) 39, 87
EaeI YGGCCR 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Ecl136II GAGCTC 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 15
Esp3I CGTCTC 1 cut(s) 243
FaeI CATG 3 cut(s) 19, 218, 436
FaiI YATR 3 cut(s) 17, 216, 434
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 1 cut(s) 203
FatI CATG 3 cut(s) 15, 214, 432
Fnu4HI GCNGC 1 cut(s) 130
FokI GGATG 1 cut(s) 453
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 130
GluI GCNGC 1 cut(s) 130
HaeIII GGCC 1 cut(s) 291
HapII CCGG 1 cut(s) 183
Hin1II CATG 3 cut(s) 19, 218, 436
HinfI GANTC 4 cut(s) 20, 67, 264, 364
HpaII CCGG 1 cut(s) 183
Hpy188I TCNGA 4 cut(s) 153, 175, 360, 451
Hpy188III TCNNGA 2 cut(s) 73, 259
HpyCH4V TGCA 2 cut(s) 436, 492
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 489
HpyF3I CTNAG 3 cut(s) 314, 324, 359
Hsp92II CATG 3 cut(s) 19, 218, 436
KpnI GGTACC 1 cut(s) 232
Kzo9I GATC 2 cut(s) 39, 87
LguI GCTCTTC 1 cut(s) 384
LpnPI CCDG 8 cut(s) 28, 136, 196, 205, 309, 336, 470, 489
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 3 cut(s) 150, 187, 431
MalI GATC 2 cut(s) 41, 89
MboI GATC 2 cut(s) 39, 87
MboII GAAGA 4 cut(s) 401, 412, 421, 425
MhlI GDGCHC 1 cut(s) 258
MmeI TCCRAC 2 cut(s) 226, 299
MnlI CCTC 6 cut(s) 48, 319, 322, 354, 367, 403
MroXI GAANNNNTTC 1 cut(s) 163
MslI CAYNNNNRTG 1 cut(s) 14
MspI CCGG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 138, 489
NcoI CCATGG 1 cut(s) 15
NdeII GATC 2 cut(s) 39, 87
NlaIII CATG 3 cut(s) 19, 218, 436
NlaIV GGNNCC 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 384
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 163
PfeI GAWTC 4 cut(s) 20, 67, 264, 364
PkrI GCNGC 1 cut(s) 131
Psp124BI GAGCTC 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 230
PstNI CAGNNNCTG 2 cut(s) 192, 310
RsaI GTAC 2 cut(s) 190, 230
RsaNI GTAC 2 cut(s) 189, 229
RseI CAYNNNNRTG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 258
SapI GCTCTTC 1 cut(s) 384
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 2 cut(s) 39, 87
SduI GDGCHC 1 cut(s) 258
SetI ASST 7 cut(s) 194, 234, 258, 325, 378, 396, 462
SfaNI GCATC 3 cut(s) 150, 187, 431
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 2 cut(s) 71, 257
SmoI CTYRAG 2 cut(s) 71, 257
SstI GAGCTC 1 cut(s) 258
StyI CCWWGG 1 cut(s) 15
TfiI GAWTC 4 cut(s) 20, 67, 264, 364
TseI GCWGC 1 cut(s) 129
TspDTI ATGAA 2 cut(s) 17, 421
TspGWI ACGGA 1 cut(s) 357
XmnI GAANNNNTTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.