Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007817.1

Orthogroup ID

OG0006199

Physical Location & Seq

Genomic Coordinates Forward (+)

19744 .. 20244

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007817.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgagcaacagcaccaccatggatgcaaagaagtctaacaagatcagggagattgtgaggcttcaacagattctcaaaaagtggagaaagatcgctaactcttcaaaagcgagctccaataccgtcagcagcagcaacaagagcatcaagtttctgaaaagaacactttctctatcagacaaaacaggcagtacctgtgaagcttctaacaatgctcatgtccccaaaggctaccttgctgtttgtgttggagaagagctcaagagattcgtcattccaacagattatctgggccgtcctgcttttcagtttctgctgagagaagctgaggaggagttcgggtttcaacagaccggcgtactgaggattccatgtgaggtttctgtgttcgaagagcttctgaagatggtggaggaagatagggatacattcttcatgcaaggatgctattcagaaagccagctcaacttttaccacccagaaagcccaatgtgtagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

166

Amino Acids

18.94

Weight (kDa)

8.8

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24400 AT4G31320
fragaria_vesca	FvH4_2g36430 FvH4_6g36860
malus_domestica	MD08G1124000.v1.1 MD09G1166200.v1.1 MD15G1102700.v1.1 MD17G1161400.v1.1
prunus_persica	Prupe.1G455700_v2.0.a1 Prupe.3G023900_v2.0.a1
pyrus_communis	pycom08g10280
rosa_chinensis	RchiOBHm_Chr2g0149251 RchiOBHm_Chr6g0305471
rosa_laevigata	RLG00000010889 RLG00000020387
rosa_multiflora	Rmu_sc0001615.1_g000010 Rmu_sc0007817.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098270 Rroxscaffold_7G00162790
rosa_rugosa	Rorug02G0410000 Rorug06G0340400
rosa_samantha	Rh2AG470800 Rh2BG483000 Rh2CG456700 Rh2DG492000
rosa_wichuraiana	Rw2G038290 Rw6G039430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	2 cut(s)	193, 360
AgsI	TTSAA	3 cut(s)	65, 105, 347
AluBI	AGCT	6 cut(s)	114, 203, 259, 326, 397, 463
AluI	AGCT	6 cut(s)	114, 203, 259, 326, 397, 463
Alw21I	GWGCWC	2 cut(s)	116, 261
AlwNI	CAGNNNCTG	2 cut(s)	195, 313
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	129, 132
Asp700I	GAANNNNTTC	2 cut(s)	166, 396
AspS9I	GGNCC	1 cut(s)	292
AsuII	TTCGAA	1 cut(s)	390
BanII	GRGCYC	2 cut(s)	116, 261
Bbv12I	GWGCWC	2 cut(s)	116, 261
BbvCI	CCTCAGC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	141, 144
BccI	CCATC	1 cut(s)	400
BceAI	ACGGC	1 cut(s)	279
BciVI	GTATCC	1 cut(s)	418
BfuI	GTATCC	1 cut(s)	418
BisI	GCNGC	2 cut(s)	130, 133
BlsI	GCNGC	2 cut(s)	131, 134
BmgT120I	GGNCC	1 cut(s)	292
BmsI	GCATC	3 cut(s)	13, 153, 434
BplI	GAGNNNNNCTC	2 cut(s)	243, 275
Bpu10I	CCTNAGC	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bse118I	RCCGGY	1 cut(s)	353
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	2 cut(s)	28, 449
BseMII	CTCAG	3 cut(s)	308, 318, 353
BseRI	GAGGAG	2 cut(s)	344, 347
BseXI	GCAGC	2 cut(s)	141, 144
BshFI	GGCC	1 cut(s)	294
BsiHKAI	GWGCWC	2 cut(s)	116, 261
BsiSI	CCGG	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	294
Bsp119I	TTCGAA	1 cut(s)	390
Bsp1286I	GDGCHC	2 cut(s)	116, 261
Bsp143I	GATC	2 cut(s)	42, 90
Bsp19I	CCATGG	1 cut(s)	18
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	3 cut(s)	309, 319, 354
BspQI	GCTCTTC	2 cut(s)	249, 387
BspT104I	TTCGAA	1 cut(s)	390
BsrFI	RCCGGY	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	2 cut(s)	42, 90
BssT1I	CCWWGG	1 cut(s)	18
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	3 cut(s)	106, 249, 387
BstBI	TTCGAA	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	112, 461
BstDEI	CTNAG	3 cut(s)	317, 327, 362
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	28, 449
BstKTI	GATC	2 cut(s)	45, 93
BstMBI	GATC	2 cut(s)	42, 90
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	141, 144
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	28, 449
Cac8I	GCNNGC	2 cut(s)	112, 461
CaiI	CAGNNNCTG	2 cut(s)	195, 313
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	2 cut(s)	192, 359
CviAII	CATG	4 cut(s)	19, 218, 372, 436
CviQI	GTAC	2 cut(s)	192, 359
DdeI	CTNAG	3 cut(s)	317, 327, 362
DpnI	GATC	2 cut(s)	44, 92
DpnII	GATC	2 cut(s)	42, 90
Eam1104I	CTCTTC	3 cut(s)	106, 249, 387
EarI	CTCTTC	3 cut(s)	106, 249, 387
Ecl136II	GAGCTC	2 cut(s)	114, 259
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	2 cut(s)	116, 261
Eco53kI	GAGCTC	2 cut(s)	114, 259
Eco57I	CTGAAG	1 cut(s)	422
EcoICRI	GAGCTC	2 cut(s)	114, 259
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	2 cut(s)	116, 261
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	4 cut(s)	22, 221, 375, 439
FaiI	YATR	4 cut(s)	20, 219, 373, 437
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	4 cut(s)	18, 217, 371, 435
Fnu4HI	GCNGC	2 cut(s)	130, 133
FokI	GGATG	2 cut(s)	35, 456
FriOI	GRGCYC	2 cut(s)	116, 261
Fsp4HI	GCNGC	2 cut(s)	130, 133
GluI	GCNGC	2 cut(s)	130, 133
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	1 cut(s)	354
Hin1II	CATG	4 cut(s)	22, 221, 375, 439
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	3 cut(s)	70, 267, 367
HpaII	CCGG	1 cut(s)	354
Hpy188I	TCNGA	4 cut(s)	156, 178, 402, 454
Hpy188III	TCNNGA	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	26, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	3 cut(s)	317, 327, 362
Hsp92II	CATG	4 cut(s)	22, 221, 375, 439
Kzo9I	GATC	2 cut(s)	42, 90
LguI	GCTCTTC	2 cut(s)	249, 387
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	8 cut(s)	31, 171, 208, 275, 312, 367, 473, 492
Lsp1109I	GCAGC	2 cut(s)	141, 144
LweI	GCATC	3 cut(s)	13, 153, 434
MalI	GATC	2 cut(s)	44, 92
MboI	GATC	2 cut(s)	42, 90
MboII	GAAGA	6 cut(s)	93, 266, 404, 415, 424, 428
MhlI	GDGCHC	2 cut(s)	116, 261
MmeI	TCCRAC	2 cut(s)	229, 302
MnlI	CCTC	6 cut(s)	51, 322, 325, 357, 370, 406
MroXI	GAANNNNTTC	2 cut(s)	166, 396
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	141
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	42, 90
NlaIII	CATG	4 cut(s)	22, 221, 375, 439
NspV	TTCGAA	1 cut(s)	390
PciSI	GCTCTTC	2 cut(s)	249, 387
PdmI	GAANNNNTTC	2 cut(s)	166, 396
PfeI	GAWTC	3 cut(s)	70, 267, 367
PkrI	GCNGC	2 cut(s)	131, 134
Psp124BI	GAGCTC	2 cut(s)	116, 261
PspPI	GGNCC	1 cut(s)	292
PstNI	CAGNNNCTG	2 cut(s)	195, 313
RsaI	GTAC	2 cut(s)	193, 360
RsaNI	GTAC	2 cut(s)	192, 359
RseI	CAYNNNNRTG	1 cut(s)	17
SacI	GAGCTC	2 cut(s)	116, 261
SapI	GCTCTTC	2 cut(s)	249, 387
SatI	GCNGC	2 cut(s)	130, 133
Sau3AI	GATC	2 cut(s)	42, 90
Sau96I	GGNCC	1 cut(s)	292
SduI	GDGCHC	2 cut(s)	116, 261
SetI	ASST	9 cut(s)	116, 197, 205, 237, 261, 328, 381, 399, 465
SfaNI	GCATC	3 cut(s)	13, 153, 434
SfuI	TTCGAA	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SstI	GAGCTC	2 cut(s)	116, 261
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	390
TfiI	GAWTC	3 cut(s)	70, 267, 367
TseI	GCWGC	2 cut(s)	129, 132
TspDTI	ATGAA	1 cut(s)	424
XmnI	GAANNNNTTC	2 cut(s)	166, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.