Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001615.1

Orthogroup ID

OG0006199

Physical Location & Seq

Genomic Coordinates Reverse (-)

40272 .. 40826

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001615.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atggattccaagaagtctaacaagatcagagagattgttaggctccaacaaatcctcaagaagtggaaaaagctagcaaatgcccctaagaacaacactaccgccattaccaattcatcatcaaccatcacagccagcactactactccaagcagcaatggcagcagaggcatcaagttcctcaagagaacactgtccttcacagatgtctcagtggctaatcagagtgacgtcgtcccaaaagggtttctcgccatttgtgtcgggaaggaactcaagaggtttatcatcccaacagagtatttgggccaccaagcatttcggattctgctccgggaagccgaggaggagttcggattccagcaagcgggtgtgctcaagattccatgtgaggtgtcagtgtttgagaagatcttgaaggtcgttgaagagaaaagggaagtcttcttcttgcacgagtttggattcaatgcagagaatgacatgattggttcttgcttatctccatcggattgtgagcttacaccttctcatcatccccaaatgtgtaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

184

Amino Acids

20.66

Weight (kDa)

9.13

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24400 AT4G31320
fragaria_vesca	FvH4_2g36430 FvH4_6g36860
malus_domestica	MD08G1124000.v1.1 MD09G1166200.v1.1 MD15G1102700.v1.1 MD17G1161400.v1.1
prunus_persica	Prupe.1G455700_v2.0.a1 Prupe.3G023900_v2.0.a1
pyrus_communis	pycom08g10280
rosa_chinensis	RchiOBHm_Chr2g0149251 RchiOBHm_Chr6g0305471
rosa_laevigata	RLG00000010889 RLG00000020387
rosa_multiflora	Rmu_sc0001615.1_g000010 Rmu_sc0007817.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098270 Rroxscaffold_7G00162790
rosa_rugosa	Rorug02G0410000 Rorug06G0340400
rosa_samantha	Rh2AG470800 Rh2BG483000 Rh2CG456700 Rh2DG492000
rosa_wichuraiana	Rw2G038290 Rw6G039430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	234
AciI	CCGC	2 cut(s)	102, 368
AcyI	GRCGYC	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	3 cut(s)	418, 428, 469
AluBI	AGCT	2 cut(s)	73, 520
AluI	AGCT	2 cut(s)	73, 520
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	1 cut(s)	214
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	2 cut(s)	153, 162
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	1 cut(s)	335
AsuNHI	GCTAGC	1 cut(s)	73
BauI	CACGAG	1 cut(s)	455
BbsI	GAAGAC	1 cut(s)	436
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	165, 174
BccI	CCATC	2 cut(s)	134, 514
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	1 cut(s)	74
BglII	AGATCT	1 cut(s)	411
BisI	GCNGC	2 cut(s)	154, 163
BlsI	GCNGC	2 cut(s)	155, 164
Bme1390I	CCNGG	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	335
BmsI	GCATC	1 cut(s)	180
BmtI	GCTAGC	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	436
BpuEI	CTTGAG	4 cut(s)	41, 167, 260, 362
BpuMI	CCSGG	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	2 cut(s)	288, 535
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMI	GCAATG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	225
BseRI	GAGGAG	2 cut(s)	359, 362
BseXI	GCAGC	2 cut(s)	165, 174
BshFI	GGCC	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	2 cut(s)	24, 411
BspACI	CCGC	2 cut(s)	102, 368
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	44
BspOI	GCTAGC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	2 cut(s)	24, 411
BssNI	GRCGYC	1 cut(s)	231
BssSI	CACGAG	1 cut(s)	455
Bst2BI	CACGAG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	195
Bst6I	CTCTTC	1 cut(s)	423
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	3 cut(s)	75, 136, 366
BstDEI	CTNAG	2 cut(s)	87, 211
BstF5I	GGATG	2 cut(s)	288, 535
BstKTI	GATC	2 cut(s)	27, 414
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	2 cut(s)	24, 411
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 162, 168
BstSCI	CCNGG	1 cut(s)	333
BstV1I	GCAGC	2 cut(s)	165, 174
BstV2I	GAAGAC	1 cut(s)	436
BstX2I	RGATCY	1 cut(s)	411
BstYI	RGATCY	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	288, 535
BtsIMutI	CAGTG	3 cut(s)	191, 219, 405
Cac8I	GCNNGC	3 cut(s)	75, 136, 366
Cfr13I	GGNCC	1 cut(s)	307
CviAII	CATG	2 cut(s)	387, 484
CviJI	RGCY	7 cut(s)	43, 73, 134, 218, 309, 341, 520
CviKI_1	RGCY	7 cut(s)	43, 73, 134, 218, 309, 341, 520
DdeI	CTNAG	2 cut(s)	87, 211
DpnI	GATC	2 cut(s)	26, 413
DpnII	GATC	2 cut(s)	24, 411
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
FaeI	CATG	2 cut(s)	390, 487
FaiI	YATR	2 cut(s)	388, 485
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	2 cut(s)	386, 483
FauI	CCCGC	1 cut(s)	361
Fnu4HI	GCNGC	2 cut(s)	154, 163
FokI	GGATG	2 cut(s)	275, 522
Fsp4HI	GCNGC	2 cut(s)	154, 163
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	2 cut(s)	154, 163
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	1 cut(s)	334
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	390, 487
HinfI	GANTC	5 cut(s)	5, 325, 357, 382, 465
HpaII	CCGG	1 cut(s)	334
Hpy188I	TCNGA	5 cut(s)	29, 225, 324, 356, 511
Hpy188III	TCNNGA	6 cut(s)	58, 184, 265, 277, 379, 415
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	4 cut(s)	208, 262, 412, 537
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	454, 473
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 162, 168
HpyF3I	CTNAG	2 cut(s)	87, 211
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	390, 487
Kzo9I	GATC	2 cut(s)	24, 411
LmnI	GCTCC	2 cut(s)	48, 336
LpnPI	CCDG	3 cut(s)	148, 347, 374
Lsp1109I	GCAGC	2 cut(s)	165, 174
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	2 cut(s)	26, 413
MboI	GATC	2 cut(s)	24, 411
MboII	GAAGA	4 cut(s)	421, 436, 439, 440
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	7 cut(s)	65, 161, 191, 273, 337, 340, 385
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	3 cut(s)	159, 162, 168
NciI	CCSGG	1 cut(s)	335
NdeII	GATC	2 cut(s)	24, 411
NheI	GCTAGC	1 cut(s)	73
NlaIII	CATG	2 cut(s)	390, 487
NlaIV	GGNNCC	1 cut(s)	44
NmeAIII	GCCGAG	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	227
PfeI	GAWTC	5 cut(s)	5, 325, 357, 382, 465
PflFI	GACNNNGTC	1 cut(s)	233
PfoI	TCCNGGA	1 cut(s)	333
PkrI	GCNGC	2 cut(s)	155, 164
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	411
PsyI	GACNNNGTC	1 cut(s)	233
SatI	GCNGC	2 cut(s)	154, 163
Sau3AI	GATC	2 cut(s)	24, 411
Sau96I	GGNCC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	378
SetI	ASST	8 cut(s)	75, 234, 284, 396, 423, 522, 529, 554
SfaNI	GCATC	1 cut(s)	180
SmlI	CTYRAG	4 cut(s)	56, 182, 275, 377
SmoI	CTYRAG	4 cut(s)	56, 182, 275, 377
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	2 cut(s)	102, 368
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	195
TaiI	ACGT	1 cut(s)	234
TasI	AATT	1 cut(s)	112
TfiI	GAWTC	5 cut(s)	5, 325, 357, 382, 465
TscAI	CASTG	3 cut(s)	198, 219, 405
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	2 cut(s)	153, 162
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	3 cut(s)	198, 219, 405
Tth111I	GACNNNGTC	1 cut(s)	233
XspI	CTAG	1 cut(s)	74
ZraI	GACGTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.