Rh2AG470800

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006199
Physical Location & Seq
Reverse (-)
69030848 .. 69031921
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG470800.1

Sequence Viewer

Length: 555 bp
ATGGATTCCAAGAAGTCTAACAAGATCAGAGAGATTGTTAGGCTCCAACAAATCCTCAAGAAGTGGAAAAAGCTAGCAAATGCCCCTAAGAACAACACTACCGCCATTACCAATTCATCATCAACCATCACAGCCAGCACTACTACTCCAAGCAGCAATGGCAGCAGAGGCATCAAGTTCCTCAAGAGAACACTGTCCTTCACAGATGTCTCAGCGGCTAATCAGAGCGACGTCGTCCCAAAAGGGTTTCTCGCCATTTGTGTCGGGAAGGAACTCAAGAGGTTTATCATCCCAACAGAGTACTTGGGCCACCAAGCATTTCGGATTCTGCTCCGGGAAGCCGAGGAGGAGTTCGGATTCCAGCAAGCGGGTGTGCTCAAGATTCCATGTGAGGTGTCAGTGTTTGAGAAGATCTTGAAGGTCGTTGAAGAGAAAAGGGAAGTCTTCTTCTTGCATGAGTTTGGATTCAATGCAGAGAATGACATGATTGGTTCTTGCTTATCTCCATCAGATTGTGAGCTTACACCTTCTCATCATCCCCAAATGTGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

184

Amino Acids

20.64

Weight (kDa)

9.13

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 15 - 141 1.3e-26 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 234
AciI CCGC 3 cut(s) 102, 215, 368
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 367
AgsI TTSAA 3 cut(s) 418, 428, 469
AluBI AGCT 2 cut(s) 73, 520
AluI AGCT 2 cut(s) 73, 520
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 1 cut(s) 214
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 2 cut(s) 153, 162
AspS9I GGNCC 1 cut(s) 307
AsuC2I CCSGG 1 cut(s) 335
AsuNHI GCTAGC 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 436
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 2 cut(s) 165, 174
BccI CCATC 2 cut(s) 134, 514
BcnI CCSGG 1 cut(s) 335
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 1 cut(s) 74
BglII AGATCT 1 cut(s) 411
BisI GCNGC 3 cut(s) 154, 163, 216
BlsI GCNGC 3 cut(s) 155, 164, 217
BmcAI AGTACT 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 335
BmsI GCATC 1 cut(s) 180
BmtI GCTAGC 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 436
BpuEI CTTGAG 4 cut(s) 41, 167, 260, 362
BpuMI CCSGG 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 342
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse3DI GCAATG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 2 cut(s) 288, 535
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMI GCAATG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 225
BseRI GAGGAG 2 cut(s) 359, 362
BseXI GCAGC 2 cut(s) 165, 174
BshFI GGCC 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 378
BsiSI CCGG 1 cut(s) 334
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 367
BsmAI GTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 378
Bsp143I GATC 2 cut(s) 24, 411
BspACI CCGC 3 cut(s) 102, 215, 368
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 44
BspOI GCTAGC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 2 cut(s) 24, 411
BssNI GRCGYC 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 195
Bst6I CTCTTC 1 cut(s) 423
BstACI GRCGYC 1 cut(s) 231
BstC8I GCNNGC 3 cut(s) 75, 136, 366
BstDEI CTNAG 2 cut(s) 87, 211
BstF5I GGATG 2 cut(s) 288, 535
BstKTI GATC 2 cut(s) 27, 414
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 2 cut(s) 24, 411
BstMWI GCNNNNNNNGC 3 cut(s) 159, 162, 168
BstSCI CCNGG 1 cut(s) 333
BstV1I GCAGC 2 cut(s) 165, 174
BstV2I GAAGAC 1 cut(s) 436
BstX2I RGATCY 1 cut(s) 411
BstYI RGATCY 1 cut(s) 411
BsuRI GGCC 1 cut(s) 309
BtsCI GGATG 2 cut(s) 288, 535
BtsIMutI CAGTG 2 cut(s) 191, 405
Cac8I GCNNGC 3 cut(s) 75, 136, 366
Cfr13I GGNCC 1 cut(s) 307
Csp6I GTAC 1 cut(s) 301
CviAII CATG 3 cut(s) 387, 455, 484
CviJI RGCY 7 cut(s) 43, 73, 134, 218, 309, 341, 520
CviKI_1 RGCY 7 cut(s) 43, 73, 134, 218, 309, 341, 520
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 2 cut(s) 87, 211
DpnI GATC 2 cut(s) 26, 413
DpnII GATC 2 cut(s) 24, 411
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
FaeI CATG 3 cut(s) 390, 458, 487
FaiI YATR 3 cut(s) 388, 456, 485
FaqI GGGAC 1 cut(s) 221
FatI CATG 3 cut(s) 386, 454, 483
FauI CCCGC 1 cut(s) 361
Fnu4HI GCNGC 3 cut(s) 154, 163, 216
FokI GGATG 2 cut(s) 275, 522
Fsp4HI GCNGC 3 cut(s) 154, 163, 216
FspBI CTAG 1 cut(s) 74
GluI GCNGC 3 cut(s) 154, 163, 216
HaeIII GGCC 1 cut(s) 309
HapII CCGG 1 cut(s) 334
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 3 cut(s) 390, 458, 487
HinfI GANTC 5 cut(s) 5, 325, 357, 382, 465
HpaII CCGG 1 cut(s) 334
Hpy188I TCNGA 5 cut(s) 29, 225, 324, 356, 511
Hpy188III TCNNGA 6 cut(s) 58, 184, 265, 277, 379, 415
Hpy99I CGWCG 2 cut(s) 233, 236
HpyAV CCTTC 4 cut(s) 208, 262, 412, 537
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 2 cut(s) 454, 473
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 162, 168
HpyF3I CTNAG 2 cut(s) 87, 211
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 3 cut(s) 390, 458, 487
Kzo9I GATC 2 cut(s) 24, 411
LmnI GCTCC 2 cut(s) 48, 336
LpnPI CCDG 3 cut(s) 148, 347, 374
Lsp1109I GCAGC 2 cut(s) 165, 174
LweI GCATC 1 cut(s) 180
MaeI CTAG 1 cut(s) 74
MaeII ACGT 1 cut(s) 231
MalI GATC 2 cut(s) 26, 413
MboI GATC 2 cut(s) 24, 411
MboII GAAGA 4 cut(s) 421, 436, 439, 440
MflI RGATCY 1 cut(s) 411
MhlI GDGCHC 1 cut(s) 378
MluCI AATT 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 7 cut(s) 65, 161, 191, 273, 337, 340, 385
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 1 cut(s) 335
MwoI GCNNNNNNNGC 3 cut(s) 159, 162, 168
NciI CCSGG 1 cut(s) 335
NdeII GATC 2 cut(s) 24, 411
NheI GCTAGC 1 cut(s) 73
NlaIII CATG 3 cut(s) 390, 458, 487
NlaIV GGNNCC 1 cut(s) 44
NmeAIII GCCGAG 1 cut(s) 367
PfeI GAWTC 5 cut(s) 5, 325, 357, 382, 465
PflFI GACNNNGTC 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 333
PkrI GCNGC 3 cut(s) 155, 164, 217
PspN4I GGNNCC 1 cut(s) 44
PspPI GGNCC 1 cut(s) 307
PsuI RGATCY 1 cut(s) 411
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SatI GCNGC 3 cut(s) 154, 163, 216
Sau3AI GATC 2 cut(s) 24, 411
Sau96I GGNCC 1 cut(s) 307
ScaI AGTACT 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 1 cut(s) 378
SetI ASST 8 cut(s) 75, 234, 284, 396, 423, 522, 529, 554
SfaNI GCATC 1 cut(s) 180
SmlI CTYRAG 4 cut(s) 56, 182, 275, 377
SmoI CTYRAG 4 cut(s) 56, 182, 275, 377
Sse9I AATT 1 cut(s) 112
SsiI CCGC 3 cut(s) 102, 215, 368
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 195
TaiI ACGT 1 cut(s) 234
TasI AATT 1 cut(s) 112
TatI WGTACW 1 cut(s) 300
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 5 cut(s) 5, 325, 357, 382, 465
TscAI CASTG 2 cut(s) 198, 405
TseI GCWGC 2 cut(s) 153, 162
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 2 cut(s) 198, 405
Tth111I GACNNNGTC 1 cut(s) 233
XspI CTAG 1 cut(s) 74
ZraI GACGTC 1 cut(s) 232
ZrmI AGTACT 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.